Silkworm Genome Informatics Database

Gene

KWMTBOMO08662 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007642

Annotation

PREDICTED:_speckle-type_POZ_protein-like_[Plutella_xylostella]

Location

Bomo_Chr15(+):1745887-1747449 View in EpiBrowser

Full name

Casein kinase II subunit beta

Location in the cell

Cytoplasmic Reliability : 2.97

CDS

ATGGAGCAATTAAATAACGAAGCCCAAACGTCGTCTTCTGGTATTCCTAAAGAAGAAAATAGAGATATAGTTTTGGGCCATCGTTCTTGTAAAACATGCGATGCAAAATGGCTCTGTATTGAAAATGTTTATCAGAAATTCCACAGGCCTAATTATTATGACATTGGAGGTACATATTATTTAGAGGATTTACCAGATTTTTGGTTCACAAGTAAAACAGAACAAGTAGGCGATATATTCCTGCTGCATATATTCATCCAAAGATATTGTGAAGGATCATTCTCTATAAGTATTAGTCATGGCAGTGAAATGGAAATTGACAAAAAACAAAAAATAGTCCGGTTAACAAAGTCACTAAAGGAATATAAATTTGAAAACACCAGAGAAAACAGTCATTCCACACAAATTGAAGGTGAACCAGAGCTAGGTTGCTTAGAATATGTAAGCACATACAATTTCTCTAATCTTGATGTTGGATTCATGAAAAATAAATCCCTGTACATAGCCATTGCATTTCCCAGTCCGAAAATACTGAATCTGAATGTTTTTGATAAATTGTTAACAGTTCATACTTTTGAAGGATTACTCAAAAATTTGGAGGATGCAGATTTTACTTTAGTGTCTGAAGATGGAGAAAAATTCAGAGTGCATAAAGCCATTCTGGCTGCACATAGTGATGTATTCAAAGCGATGTTCAGGGAAGAGACAATTGAGAGTCAGAAGCAGTTGGTAAAACTTGTAGACGTGACTGCAGAAGATTTGAAATACTTGATAGAATATCTATATACTGGTTACCTAAAAAATATAGAAAATGCCGACTTTGTCAACCTGCTAATGATAGCTGACAGATACAATCTAAAAGGCTTAAGACATCTTTCTCAGTGTGCACTTGCTGAACAGCTGACAATAGAAAATGCATTCTATATATTAGCAATGGCAGATATGTATGATTCTAATTATTTGAAGGCAGAGTCGCTAAAGTTCATTAAAAAGAACAAAGACACTTTAAAAGTAAACACCTTCAAAGACATCACTAATGCAGAATTAGTAAGAGAACTTTTCACTTACCTTGTTGATGAAGACTAG

Protein

MEQLNNEAQTSSSGIPKEENRDIVLGHRSCKTCDAKWLCIENVYQKFHRPNYYDIGGTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDKKQKIVRLTKSLKEYKFENTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGFMKNKSLYIAIAFPSPKILNLNVFDKLLTVHTFEGLLKNLEDADFTLVSEDGEKFRVHKAILAAHSDVFKAMFREETIESQKQLVKLVDVTAEDLKYLIEYLYTGYLKNIENADFVNLLMIADRYNLKGLRHLSQCALAEQLTIENAFYILAMADMYDSNYLKAESLKFIKKNKDTLKVNTFKDITNAELVRELFTYLVDED

Description

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Subunit

Tetramer of two alpha and two beta subunits.

Similarity

Belongs to the casein kinase 2 subunit beta family.

Uniprot

H9JDP5 A0A2A4K6Q1 A0A1E1WJI1 A0A437BXK8 A0A2H1WPJ0 A0A0N1IIL1 + More
A0A194PPM1 S4PBF8 A0A212F8T8 A0A0L7L3E0 A0A1E1WIA4 A0A1E1W2D5 A0A2A4K748 A0A3S2PLW2 A0A2H1WPM1 A0A0N0PEH5 A0A212F8S7

Pubmed

19121390 26354079 23622113 22118469 26227816

EMBL

BABH01003226 NWSH01000087 PCG79749.1 GDQN01003966 JAT87088.1 RSAL01000001 + More
RVE55197.1 ODYU01010079 SOQ54927.1 KQ459781 KPJ19977.1 KQ459596 KPI95391.1 GAIX01004641 JAA87919.1 AGBW02009681 OWR50133.1 JTDY01003289 KOB69794.1 GDQN01004330 JAT86724.1 GDQN01009993 JAT81061.1 PCG79734.1 RVE55195.1 SOQ54926.1 KPJ19974.1 OWR50131.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000053240 UP000053268 UP000007151 + More
UP000037510

PRIDE

H9JDP5

Pfam

PF00651 BTB + More
PF01214 CK_II_beta

Interpro

IPR011333   SKP1/BTB/POZ_sf        + More
IPR000210   BTB/POZ_dom
IPR016149   Casein_kin_II_reg-sub_N
IPR000704   Casein_kinase_II_reg-sub
IPR035991   Casein_kinase_II_beta-like

SUPFAM

SSF54695 SSF54695 + More
SSF57798 SSF57798

Gene 3D

1.10.1820.10

ProteinModelPortal

H9JDP5 A0A2A4K6Q1 A0A1E1WJI1 A0A437BXK8 A0A2H1WPJ0 A0A0N1IIL1 + More
A0A194PPM1 S4PBF8 A0A212F8T8 A0A0L7L3E0 A0A1E1WIA4 A0A1E1W2D5 A0A2A4K748 A0A3S2PLW2 A0A2H1WPM1 A0A0N0PEH5 A0A212F8S7

PDB

4J8Z E-value=4.10757e-19, Score=232

KEGG

101745828 K10523 speckle-type POZ protein | (RefSeq) BTB/POZ domain-containing protein At1g21780-like

PATHWAY

04341 Hedgehog signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0019887 GO:0005956 GO:0005515 GO:0005524 GO:0006418 GO:0000166 GO:0004820 GO:0005737 GO:0006426 GO:0003676 GO:0016876 GO:0043039

PANTHER

PTHR11740

Length:

361

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03462

Exp number, first 60 AAs:

6e-05

Total prob of N-in:

0.02504

outside

1 - 361

Pi

52.063831

Theta

157.525376

Tajima's D

-2.037657

CLR

9303.403607

CSRT

0.0114994250287486

Interpretation

Possibly Positive selection

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics