SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08660
Pre Gene Modal
BGIBMGA007943
Annotation
PREDICTED:_uncharacterized_protein_LOC101742795_[Bombyx_mori]
Location in the cell
Extracellular   Reliability : 1.265 PlasmaMembrane   Reliability : 1.641
 

Sequence

CDS
ATGTTGTATGTGCGGGTCAGACAGGCGGTGTGCGTGTGGGCGCACTCCGGTCAGCCGTACAACCAGCTGGCGCTGGTGGCGAGCCGCGGGGGGCGGCGGCTGGCGGCGCTGTACTGGCAGGTGCGGGCGCTGCTCGTGCGTGCCCCCTTCCCGCCCGCGCCGGCCAACCTCGCCAGGACCTTACGAGCGGCTGCCAGTGCTTGCAACACTGAAGTGCCAGTGTTGCCAGGTGTGACGCAGACGACAGAGTCGACAGTGACGCCAACCACGAAGCGATTGGATTCGCACTCGTACATCACTGAACTCATGAAGGCATTACATCTCATACATTCAGTTGAAGATCTGAAGACGGCGTCGAGTATGGTGAGCAACCTGAACTCGTCGCTGACTGCCCTGGTGGCTACCGACAGCTTCGAGTCCATGACACTAGTCAAGATGACCTGCGTTTTAATATGGTTAGTACACTCGTCTACCGAGGACTTGACCCTGGACAGCAGCACGCTGACCGACGACGAGGCTCTAGCGGCGGAGCTCAGCAGGTCCCTGGCGGCCGGCGCGGTGCTGGCCCTGCTCCTCCCGGCCTACACTTCGGACCGGCCGCCGGAGAAGGCGTTACCGGCACGTGAGTATCTACTGCCAAGTATGAGCAAAGGATTTCATGGTTAA
Protein
MLYVRVRQAVCVWAHSGQPYNQLALVASRGGRRLAALYWQVRALLVRAPFPPAPANLARTLRAAASACNTEVPVLPGVTQTTESTVTPTTKRLDSHSYITELMKALHLIHSVEDLKTASSMVSNLNSSLTALVATDSFESMTLVKMTCVLIWLVHSSTEDLTLDSSTLTDDEALAAELSRSLAAGAVLALLLPAYTSDRPPEKALPAREYLLPSMSKGFHG

Summary

Pfam
PF10373   EST1_DNA_bind        + More
PF10374   EST1
Interpro
IPR011990   TPR-like_helical_dom_sf        + More
IPR019458   EST1       
IPR018834   DNA/RNA-bd_Est1-type       
SUPFAM
SSF48452   SSF48452       
Gene 3D
PDB
1YA0     E-value=4.17287e-08,     Score=135

Ontologies

Topology

Length:
221
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.28674
Exp number, first 60 AAs:
0.01164
Total prob of N-in:
0.17001
outside
1  -  221
 
 

Population Genetic Test Statistics

Pi
176.851859
Theta
187.696145
Tajima's D
-0.545166
CLR
0
CSRT
0.230088495575221
Interpretation
Uncertain
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