Gene

KWMTBOMO08658

Pre Gene Modal

BGIBMGA007641

Annotation

PREDICTED:_multivesicular_body_subunit_12A_[Papilio_xuthus]

Location

Bomo_Chr15(+):1694103-1712197      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.438

CDS

ATGTCTAAAGTACTGAGCGCCCTCGGTGGCGCTTTACCCGACGAGAGGCCGGTTCTATCTCTTCAGATCGTGGAGACAGTTGCCAAGTGCCCCGCCGGGTACTGGCCGGTCAGTCGGACTTACGACGAAGACTCCGACGCTGGACTACAGAGACAGAATGGACTGTTCGGGAAAAAGTCGAGTCACTACATCTGCCTCTCCAAGTCTGAGGGCGTACCGGGGTACGTGATGGACGGGATGGCCGTGATCGGCGACGGAGAGCTGATCCCGGCCGGGTACAGCGTGGCGGGTCGAGCCGGGAAGCGCCGTCTGTGCACGCGCGTGTCGCGTCACACCGCCTCCGCCACCTCACTCGTCACTGACGTCATCGTCTGCTCGAAGATGAGGACCGCACCGCAGGGCTTCATTCTGGCCGGTGCGATAAGCGGTAAAATGGTGTGTTACAAAGTGAGCGGGGGCAGCGCGGACACGTCGCCGACGCATGCGCACAACGAGTACGAGAACGTCGTCACCAACCTCACGCCCGAAGCCAACAGGAGATTGCGAGCAGTACCCGAACGACCTCCTAAGCTTCCCACTCTCATCACGGATCTGAACAACTTGAACATAACCCAGTCGCCCGCTTCGTATCCCAAAATCAACGGTCTCGTGACGGACCACGACTACGAGGCCTTGAATCCTTCGTATAATATCAAGCCGAGTAGGCCCGCGCCCCGGCCTCCGTCCTCGAAGTCCCCGGTACCCGAAGCGAAGTCCCCTCAGCCGGTCGCGAGGAAGAAAGGCCCCGCCCCCCTACCCGGGCCGAGGAACACGATATACCAGACCCTGGGAGGATATAACGGCATGGAAGGAGTGCCGTTTGTGTTGAACTCCAAGCTGCGAGGGCTGCCTAGTGATTCGCTGACTCAATTCCCGGTAATAAAGAAACGAACGCGCTTCGAGCTCGACCGTGACTATTCGTACAACTTCGCAATCGAACGACAGACGTGA

Protein

MSKVLSALGGALPDERPVLSLQIVETVAKCPAGYWPVSRTYDEDSDAGLQRQNGLFGKKSSHYICLSKSEGVPGYVMDGMAVIGDGELIPAGYSVAGRAGKRRLCTRVSRHTASATSLVTDVIVCSKMRTAPQGFILAGAISGKMVCYKVSGGSADTSPTHAHNEYENVVTNLTPEANRRLRAVPERPPKLPTLITDLNNLNITQSPASYPKINGLVTDHDYEALNPSYNIKPSRPAPRPPSSKSPVPEAKSPQPVARKKGPAPLPGPRNTIYQTLGGYNGMEGVPFVLNSKLRGLPSDSLTQFPVIKKRTRFELDRDYSYNFAIERQT

Cofactor

FAD

Uniprot

H9JDP4   A0A2A4K685   A0A2H1WPD4   A0A1E1W9F8   A0A194PRL2   A0A0N1IH02   + More
A0A437BXT5   A0A212F8R2   A0A0C9RC42   A0A182YSI2   A0A088A6T6   A0A1Y1M389   K7J8W9   A0A1B0G200   A0A1B6EJ09   A0A1B6BX25   A0A1B6KEH8   A0A067R1N0   A0A1W4W7N3   A0A0L7QPA3   A0A1A9UQE0   A0A182QY32   A0A182SWR5   A0A2A3E9M0   A0A1A9ZWY4   A0A182R2W6   A0A023EMY6   A0A182GPW3   A0A1Q3FWK9   A0A1Q3FWI4   A0A182ICV5   A0A182XLE4   A0A1Q3FWV7   A0A182LD15   A0A182TV96   A0A182M5C0   T1PKZ4   A0A0A1XKX0   A0A195FKA0   A0A1I8NGX6   Q7Q2L3   A0A3L8DE57   A0A026WRI5   A0A182J3Y6   A0A084W197   A0A158NEE7   E2BA76   A0A1I8P1N7   A0A182WAW5   A0A0J7L6K3   A0A195BV94   E9IAK4   A0A151XJE8   A0A0N0U7M7   A0A195ENH0   A0A154NZP9   Q178L3   W8AL10   A0A2S2NE24   A0A034W0M8   E2AHQ1   A0A023F2H4   A0A0C9QBY3   F4WVL4   A0A0K8UHD4   A0A310SP03   N6T820   B4NPH4   D6X4S1   A0A151IAF9   U5EEK5   J9JYP9   A0A1A9X8P9   A0A2S2QKG9   A0A0Q5T3V7   A0A1W4V0P8   A0A182K9G2   B4M7V8   A0A0R1EFP6   A0A0Q9WHM1   B4L2I0   A0A2M4AWV7   A0A1L8DCP5   A0A1L8DCH4   B4NUL4   B4Q2U5   A0A1L8DC88   A0A0M4ETU4   A0A3B0K4Z6   A0A0P5ZI67  

Pubmed

19121390    26354079    22118469    25244985    28004739    20075255    + More
24845553    24945155    26483478    20966253    25830018    25315136    12364791    14747013    17210077    30249741    24508170    24438588    21347285    20798317    21282665    17510324    24495485    25348373    25474469    21719571    23537049    17994087    18362917    19820115    18057021    17550304   

EMBL

BABH01003229    BABH01003230    JX569225    AFW03820.1    NWSH01000087    PCG79751.1    + More
ODYU01010079    SOQ54929.1    GDQN01007553    GDQN01000179    JAT83501.1    JAT90875.1    KQ459596    KPI95389.1    KQ459781    KPJ19980.1    RSAL01000001    RVE55200.1    AGBW02009681    OWR50135.1    GBYB01004501    GBYB01013827    JAG74268.1    JAG83594.1    GEZM01044290    GEZM01044289    JAV78326.1    CCAG010014406    CCAG010014407    GECZ01031856    JAS37913.1    GEDC01031465    GEDC01016094    JAS05833.1    JAS21204.1    GEBQ01030131    JAT09846.1    KK852989    KDR12795.1    KQ414819    KOC60468.1    AXCN02001880    KZ288312    PBC28427.1    GAPW01002871    JAC10727.1    JXUM01016537    JXUM01016538    JXUM01016539    JXUM01016540    JXUM01016541    JXUM01016542    KQ560461    KXJ82308.1    GFDL01003078    JAV31967.1    GFDL01003064    JAV31981.1    APCN01007380    GFDL01003089    JAV31956.1    AXCM01012307    KA648628    AFP63257.1    GBXI01014167    GBXI01002651    JAD00125.1    JAD11641.1    KQ981490    KYN41095.1    AAAB01008968    EAA13234.4    QOIP01000009    RLU18715.1    KK107119    EZA58645.1    ATLV01019249    KE525266    KFB43991.1    ADTU01013268    GL446678    EFN87418.1    LBMM01000457    KMQ98291.1    KQ976401    KYM92502.1    GL762027    EFZ22397.1    KQ982080    KYQ60425.1    KQ435709    KOX80074.1    KQ978625    KYN29691.1    KQ434782    KZC04564.1    CH477362    EAT42629.1    GAMC01020024    GAMC01020022    GAMC01020018    GAMC01020015    JAB86537.1    GGMR01002756    MBY15375.1    GAKP01010749    GAKP01010748    JAC48204.1    GL439579    EFN67031.1    GBBI01003493    JAC15219.1    GBYB01000749    JAG70516.1    GL888387    EGI61835.1    GDHF01026217    GDHF01021424    GDHF01017443    GDHF01017028    GDHF01010439    GDHF01007188    GDHF01005175    GDHF01002030    JAI26097.1    JAI30890.1    JAI34871.1    JAI35286.1    JAI41875.1    JAI45126.1    JAI47139.1    JAI50284.1    KQ761605    OAD57338.1    APGK01048274    KB741103    KB632401    ENN73863.1    ERL94930.1    CH964291    EDW86414.1    KQ971380    EEZ97653.2    KQ978221    KYM96293.1    GANO01004290    JAB55581.1    ABLF02026961    GGMS01009034    MBY78237.1    CH954180    KQS30034.1    KQS30035.1    CH940653    EDW62875.1    KRF80832.1    CM000162    KRK06914.1    KRK06915.1    KRF80831.1    CH933810    EDW06856.1    KRF93843.1    GGFK01011958    MBW45279.1    GFDF01010000    JAV04084.1    GFDF01009999    JAV04085.1    CH984107    EDX16661.1    EDX02679.1    GFDF01010001    JAV04083.1    CP012528    ALC48385.1    OUUW01000003    SPP78538.1    GDIP01043220    LRGB01000245    JAM60495.1    KZS20130.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    + More
UP000076408    UP000005203    UP000002358    UP000092444    UP000027135    UP000192223    UP000053825    UP000078200    UP000075886    UP000075901    UP000242457    UP000092445    UP000075900    UP000069940    UP000249989    UP000075840    UP000076407    UP000075882    UP000075902    UP000075883    UP000078541    UP000095301    UP000007062    UP000279307    UP000053097    UP000075880    UP000030765    UP000005205    UP000008237    UP000095300    UP000075920    UP000036403    UP000078540    UP000075809    UP000053105    UP000078492    UP000076502    UP000008820    UP000000311    UP000007755    UP000019118    UP000030742    UP000007798    UP000007266    UP000078542    UP000007819    UP000092443    UP000008711    UP000192221    UP000075881    UP000008792    UP000002282    UP000009192    UP000000304    UP000092553    UP000268350    UP000076858   

PRIDE

H9JDP4   

Pfam

PF10240   DUF2464        + More
PF00173   Cyt-b5
PF00175   NAD_binding_1
PF00970   FAD_binding_6
PF07001   BAT2_N

Interpro

IPR023341   MABP        + More
IPR040335   MVB12A       
IPR018798   MVB12A/B       
IPR023340   UMA       
IPR017927   FAD-bd_FR_type       
IPR001433   OxRdtase_FAD/NAD-bd       
IPR001199   Cyt_B5-like_heme/steroid-bd       
IPR036400   Cyt_B5-like_heme/steroid_sf       
IPR017938   Riboflavin_synthase-like_b-brl       
IPR001834   CBR-like       
IPR018506   Cyt_B5_heme-BS       
IPR039261   FNR_nucleotide-bd       
IPR008333   Cbr1-like_FAD-bd_dom       
IPR009738   BAT2_N       
IPR040297   MVB12B       

SUPFAM

SSF63380   SSF63380        + More
SSF55856   SSF55856       
SSF52343   SSF52343       

Gene 3D

3.10.120.10     3.40.50.80    

ProteinModelPortal

H9JDP4   A0A2A4K685   A0A2H1WPD4   A0A1E1W9F8   A0A194PRL2   A0A0N1IH02   + More
A0A437BXT5   A0A212F8R2   A0A0C9RC42   A0A182YSI2   A0A088A6T6   A0A1Y1M389   K7J8W9   A0A1B0G200   A0A1B6EJ09   A0A1B6BX25   A0A1B6KEH8   A0A067R1N0   A0A1W4W7N3   A0A0L7QPA3   A0A1A9UQE0   A0A182QY32   A0A182SWR5   A0A2A3E9M0   A0A1A9ZWY4   A0A182R2W6   A0A023EMY6   A0A182GPW3   A0A1Q3FWK9   A0A1Q3FWI4   A0A182ICV5   A0A182XLE4   A0A1Q3FWV7   A0A182LD15   A0A182TV96   A0A182M5C0   T1PKZ4   A0A0A1XKX0   A0A195FKA0   A0A1I8NGX6   Q7Q2L3   A0A3L8DE57   A0A026WRI5   A0A182J3Y6   A0A084W197   A0A158NEE7   E2BA76   A0A1I8P1N7   A0A182WAW5   A0A0J7L6K3   A0A195BV94   E9IAK4   A0A151XJE8   A0A0N0U7M7   A0A195ENH0   A0A154NZP9   Q178L3   W8AL10   A0A2S2NE24   A0A034W0M8   E2AHQ1   A0A023F2H4   A0A0C9QBY3   F4WVL4   A0A0K8UHD4   A0A310SP03   N6T820   B4NPH4   D6X4S1   A0A151IAF9   U5EEK5   J9JYP9   A0A1A9X8P9   A0A2S2QKG9   A0A0Q5T3V7   A0A1W4V0P8   A0A182K9G2   B4M7V8   A0A0R1EFP6   A0A0Q9WHM1   B4L2I0   A0A2M4AWV7   A0A1L8DCP5   A0A1L8DCH4   B4NUL4   B4Q2U5   A0A1L8DC88   A0A0M4ETU4   A0A3B0K4Z6   A0A0P5ZI67  

PDB

3TOW     E-value=0.000113234,     Score=107

KEGG

101745967    K12186 ESCRT-I complex subunit MVB12 | (RefSeq) Mvb12; multivesicular body subunit 12B-like

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0000813   GO:0020037   GO:0046872   GO:0016491   GO:0005524   GO:0006418   GO:0000166   GO:0004820   GO:0005737   GO:0006426   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR31612   PTHR31547  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0317

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00540

outside

1  -  329

 

 

Pi

238.604262

Theta

151.18806

Tajima's D

-1.356415

CLR

204.029641

CSRT

0.079746012699365

Interpretation

Uncertain