Gene

KWMTBOMO08637  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007631

Annotation

PREDICTED:_nucleolar_complex_protein_4_homolog_B_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr15(+):1464913-1472828      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.017 Nuclear   Reliability : 1.618

CDS

ATGGCTGCTGTGCAACAAAATTTTTCGAAAATGATTTCGGGACAGCTTCGTAATAAAGCAAATGAGTTTCTTAACTCCAGAAAACATGCGAACAATCTTGCTGATATATTGCAGATGTTTGAGGTCGAAACAGACAATTATACGCCGCTAATGCTTACAATAGAAGTAATATTCACCGAACTATTAAAACGGGGCGATTTAGTCCAGGAAATAGTTCCATTAAAGCCTGCAGAACAAAGTCCAGAAGCGGAGTACACAAGATGGCTTCGTGAATGCTACGAGACTGCTCTCGCTCGTATATTAGCTTGTGTAATGAAAGGACGCACAAATTCTCGGCTGCAAGCTCTTGTCACAGCCTCCAAATTACTGCAAGTTGAAGGGAAACACCCACTGGAGCAGAGCTCTGGATATTACTTCCCATCGTTCAGATTGAAGAACATTTTCACAGTACTGTTGGACTCTGATATGTCCATGTCAGCTCCATTAGCACGTTTCCAAGAGTTCACAGAGTACAAAGATGTGCAGCAGTATGGACTGAAAGTTCTCTCTACCCTGGCATATCGGAAGTCTCCCACTACAGTCTACATGCAGAATTACTTGGAACTTCTTGACAAACTACTAATCTCAGAGATTGCCACTGAGACAAAAACTAAAAATAACAAAGGTGGTGATGACCATGAAGAAGAATTTAAAGTTCTATGTGGCACAAATGCCAAGGTGCCATTCCCGTACAACCCGGGCGTGTGTCGTCGCTACGCCAACCGCTGCTGGAGCTTCGCGTGCCAGTGGCCGCTGTGCTCGGAGCCGCGCACGCACCGCCGCGCCCTGCTGCTGCTGGTGGAGCGCCTCATGCCGCTGCTCAGCAAGCCGCACCTCGCCACCGACATGCTCTGCGACAGTCTCGACGCCGGCGGTCCGATCAGCATGCTGGCGCTGCAGGGCGTGCTGGAGCTGGTGCGGCGGCACAACGTCGACTACCCGGACATGTACGACCGCCTGTACGCGATGTTCGAGCCGGAGATGTTCGCCACGCGCTACAAGCGGCGCCTCATGCACCTCGCCGACATCTTCCTCAGCTCCACACATTTGCCTGAGAGTTTGGTGGCGGCCTTCGCAAAGCGTCTGTCTCGGCTGGCGTTGGTGGCCTGCCCGGAGGACGCCGTGGGGCTGCTGCAGCTCATAGCCAACCTGCTGCTCCGACATCCGGCGTTGAAGCGCATGATCTGCTACGAAGATACGCCCGCCATCATGTCGAGCGACCCGTACGTGATGGAGGAGACGTGCGCGGCGCGCGCGGGCGCGCTGGGCTCGTCGCTGTGGGAGGTGGCCGCGCTGCGCCGCCACGCCGCGCCCGCGCTCTCCGCCGCGCTCGCCGCCGTGCTCGCCGCCGCCGACCCGCGCCCCGAGCCCTTCAACCTGTCCTCCGGGGACGCCAAGATGTTTGATGCTGAGTTGAAGAAAAGATTCAAAACGATCGAGATGAACTTTATCCGGCCTCAAGGTATGACTGCGCCCTCTGGCGAACGTCTCATGCAGTACTGGGAACTGATGGCTTGA

Protein

MAAVQQNFSKMISGQLRNKANEFLNSRKHANNLADILQMFEVETDNYTPLMLTIEVIFTELLKRGDLVQEIVPLKPAEQSPEAEYTRWLRECYETALARILACVMKGRTNSRLQALVTASKLLQVEGKHPLEQSSGYYFPSFRLKNIFTVLLDSDMSMSAPLARFQEFTEYKDVQQYGLKVLSTLAYRKSPTTVYMQNYLELLDKLLISEIATETKTKNNKGGDDHEEEFKVLCGTNAKVPFPYNPGVCRRYANRCWSFACQWPLCSEPRTHRRALLLLVERLMPLLSKPHLATDMLCDSLDAGGPISMLALQGVLELVRRHNVDYPDMYDRLYAMFEPEMFATRYKRRLMHLADIFLSSTHLPESLVAAFAKRLSRLALVACPEDAVGLLQLIANLLLRHPALKRMICYEDTPAIMSSDPYVMEETCAARAGALGSSLWEVAALRRHAAPALSAALAAVLAAADPRPEPFNLSSGDAKMFDAELKKRFKTIEMNFIRPQGMTAPSGERLMQYWELMA

Uniprot

H9JDN4   A0A2H1WWW0   A0A194PPJ7   A0A212FB82   A0A3S2PLW8   A0A0N1PJE0   + More
A0A0L7R5D7   W8CCQ3   E2BBR0   A0A2A3EHG3   A0A0J7L4F7   A0A088ACF1   E9J3P6   A0A154PJ69   A0A0A1X3T4   A0A026WAS5   F4W673   A0A195AVM6   A0A195DMR0   A0A158P202   A0A1L8DRN8   A0A0N0U6Z2   A0A0K8TKR7   A0A034WCQ9   E2AY71   A0A0K8WB17   A0A151IKK9   A0A195FJ64   A0A067R6T6   A0A1L8DRT8   A0A0C9R7I8   A0A2P8XU77   A0A0T6B489   A0A232F4Z6   A0A0L0C3S7   A0A1W4WU83   A0A1B0CBF0   A0A1Y1L8R3   A0A1I8QA03   A0A182H461   Q17FJ6   A0A182G892   A0A023ETC8   A0A1A9VNE4   A0A1B0AFF0   D3TLC4   A0A084VRU3   A0A1A9WA77   A0A1B0AUC8   D6X118   U5EV79   A0A1Q3F4U9   U4UIX0   A0A1A9XKG1   A0A182J377   Q1DGD8   A0A1B0FQ44   B0XHP9   A0A1J1HJW1   A0A336LY15   A0A1B6E3T7   A0A336KXB3   A0A1I8M756   A0A182LTX1   A0A182QP55   A0A2M4AD98   A0A2M4AD79   A0A182SIP4   Q7PYC7   W5J6F2   A0A2C9GRN0   N6SSA2   A0A2M4BK23   A0A2M4AF38   A0A2M4ADI1   A0A2M3Z4X7   A0A2M3Z4Y5   A0A2M4BK47   T1DQF0   A0A182KM64   A0A182YJW0   T1DQF7   A0A182UTN7   A0A182R1H1   A0A182VQW2   A0A182N4W6   A0A182XBN4   A0A182UJU0   A0A182K4S0   A0A1Q3F522   A0A182PEE2   V5GYM6   A0A2J7R095   A0A1S3DTP4   B4L494  

Pubmed

19121390    26354079    22118469    24495485    20798317    21282665    + More
25830018    24508170    30249741    21719571    21347285    26369729    25348373    24845553    29403074    28648823    26108605    28004739    26483478    17510324    24945155    20353571    24438588    18362917    19820115    23537049    25315136    12364791    14747013    17210077    20920257    23761445    20966253    25244985    17994087   

EMBL

BABH01003239    ODYU01011611    SOQ57456.1    KQ459596    KPI95366.1    AGBW02009363    + More
OWR51002.1    RSAL01000001    RVE55218.1    KQ460497    KPJ14324.1    KQ414654    KOC66034.1    GAMC01003296    JAC03260.1    GL447151    EFN86836.1    KZ288256    PBC30616.1    LBMM01000815    KMQ97428.1    GL768069    EFZ12458.1    KQ434923    KZC11504.1    GBXI01008999    JAD05293.1    KK107293    QOIP01000005    EZA53150.1    RLU23110.1    GL887707    EGI70208.1    KQ976731    KYM76293.1    KQ980724    KYN14117.1    ADTU01006919    GFDF01004962    JAV09122.1    KQ435712    KOX79371.1    GDAI01002636    JAI14967.1    GAKP01006850    JAC52102.1    GL443762    EFN61606.1    GDHF01003926    JAI48388.1    KQ977199    KYN05000.1    KQ981523    KYN40448.1    KK852703    KDR18092.1    GFDF01005000    JAV09084.1    GBYB01003990    JAG73757.1    PYGN01001338    PSN35555.1    LJIG01016005    KRT81901.1    NNAY01000998    OXU25550.1    JRES01000948    KNC26907.1    AJWK01005094    AJWK01005095    GEZM01064541    JAV68730.1    JXUM01108816    JXUM01108817    JXUM01108818    JXUM01108819    JXUM01108820    JXUM01108821    KQ565266    KXJ71153.1    CH477270    EAT45347.1    JXUM01151632    KQ571263    KXJ68214.1    GAPW01001008    JAC12590.1    EZ422226    ADD18502.1    ATLV01015780    KE525036    KFB40687.1    JXJN01003606    KQ971367    EFA09396.1    GANO01001980    JAB57891.1    GFDL01012461    JAV22584.1    KB632343    ERL93022.1    CH902499    EAT32217.1    CCAG010006700    DS233189    EDS28556.1    CVRI01000002    CRK86758.1    UFQS01000218    UFQT01000218    SSX01501.1    SSX21881.1    GEDC01004741    JAS32557.1    UFQS01001264    UFQT01001264    SSX10041.1    SSX29763.1    AXCM01002674    AXCN02000187    GGFK01005409    MBW38730.1    GGFK01005389    MBW38710.1    AAAB01008987    EAA01545.4    EGK97452.1    ADMH02002134    ETN58410.1    APCN01002077    APGK01058607    KB741291    ENN70524.1    GGFJ01004288    MBW53429.1    GGFK01006073    MBW39394.1    GGFK01005461    MBW38782.1    GGFM01002815    MBW23566.1    GGFM01002840    MBW23591.1    GGFJ01004289    MBW53430.1    GAMD01002559    JAA99031.1    GAMD01002529    JAA99061.1    GFDL01012390    JAV22655.1    GALX01001504    JAB66962.1    NEVH01008283    PNF34244.1    CH933810    EDW07372.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000283053    UP000053240    UP000053825    + More
UP000008237    UP000242457    UP000036403    UP000005203    UP000076502    UP000053097    UP000279307    UP000007755    UP000078540    UP000078492    UP000005205    UP000053105    UP000000311    UP000078542    UP000078541    UP000027135    UP000245037    UP000215335    UP000037069    UP000192223    UP000092461    UP000095300    UP000069940    UP000249989    UP000008820    UP000078200    UP000092445    UP000030765    UP000091820    UP000092460    UP000007266    UP000030742    UP000092443    UP000075880    UP000092444    UP000002320    UP000183832    UP000095301    UP000075883    UP000075886    UP000075901    UP000007062    UP000000673    UP000075840    UP000019118    UP000075882    UP000076408    UP000075903    UP000075900    UP000075920    UP000075884    UP000076407    UP000075902    UP000075881    UP000075885    UP000235965    UP000079169    UP000009192   

PRIDE

H9JDN4   

Pfam

PF03914   CBF        + More
PF00400   WD40
PF13520   AA_permease_2
PF15375   DUF4602
PF05731   TROVE

Interpro

IPR027193   Noc4        + More
IPR005612   CCAAT-binding_factor       
IPR001251   CRAL-TRIO_dom       
IPR019775   WD40_repeat_CS       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR002293   AA/rel_permease1       
IPR027973   DUF4602       
IPR008858   TROVE_dom       
IPR037214   TROVE_dom_sf       
IPR036465   vWFA_dom_sf       
IPR040322   TROVE2       
IPR016024   ARM-type_fold       

SUPFAM

SSF50978   SSF50978        + More
SSF53300   SSF53300       
SSF140864   SSF140864       
SSF48371   SSF48371       

Gene 3D

2.130.10.10     3.40.50.410    

ProteinModelPortal

H9JDN4   A0A2H1WWW0   A0A194PPJ7   A0A212FB82   A0A3S2PLW8   A0A0N1PJE0   + More
A0A0L7R5D7   W8CCQ3   E2BBR0   A0A2A3EHG3   A0A0J7L4F7   A0A088ACF1   E9J3P6   A0A154PJ69   A0A0A1X3T4   A0A026WAS5   F4W673   A0A195AVM6   A0A195DMR0   A0A158P202   A0A1L8DRN8   A0A0N0U6Z2   A0A0K8TKR7   A0A034WCQ9   E2AY71   A0A0K8WB17   A0A151IKK9   A0A195FJ64   A0A067R6T6   A0A1L8DRT8   A0A0C9R7I8   A0A2P8XU77   A0A0T6B489   A0A232F4Z6   A0A0L0C3S7   A0A1W4WU83   A0A1B0CBF0   A0A1Y1L8R3   A0A1I8QA03   A0A182H461   Q17FJ6   A0A182G892   A0A023ETC8   A0A1A9VNE4   A0A1B0AFF0   D3TLC4   A0A084VRU3   A0A1A9WA77   A0A1B0AUC8   D6X118   U5EV79   A0A1Q3F4U9   U4UIX0   A0A1A9XKG1   A0A182J377   Q1DGD8   A0A1B0FQ44   B0XHP9   A0A1J1HJW1   A0A336LY15   A0A1B6E3T7   A0A336KXB3   A0A1I8M756   A0A182LTX1   A0A182QP55   A0A2M4AD98   A0A2M4AD79   A0A182SIP4   Q7PYC7   W5J6F2   A0A2C9GRN0   N6SSA2   A0A2M4BK23   A0A2M4AF38   A0A2M4ADI1   A0A2M3Z4X7   A0A2M3Z4Y5   A0A2M4BK47   T1DQF0   A0A182KM64   A0A182YJW0   T1DQF7   A0A182UTN7   A0A182R1H1   A0A182VQW2   A0A182N4W6   A0A182XBN4   A0A182UJU0   A0A182K4S0   A0A1Q3F522   A0A182PEE2   V5GYM6   A0A2J7R095   A0A1S3DTP4   B4L494  

PDB

5WLC     E-value=2.26573e-21,     Score=253

KEGG

101736325    K14771 U3 small nucleolar RNA-associated protein 19 | (RefSeq) nucleolar complex protein 4 homolog B

GO

GO:0042254   GO:0022857   GO:0016021   GO:0032040   GO:0005730   GO:0030692   GO:0003723  

PANTHER

PTHR12455   PTHR14202  

Length:

518

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13487

Exp number, first 60 AAs:

0.00093

Total prob of N-in:

0.00555

outside

1  -  518

 

 

Pi

208.611432

Theta

173.390742

Tajima's D

1.091123

CLR

0.165701

CSRT

0.685915704214789

Interpretation

Uncertain