Gene

KWMTBOMO08636  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007954

Annotation

PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Amyelois_transitella]

Location

Bomo_Chr15(-):1458740-1464452      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.13 Nuclear   Reliability : 1.949

CDS

ATGGACGGAGATTTATATGACGAATTTGGAAACTACATCGGGCCAGACTTGGAGTCTGATTCTGAAGACGAACAGAGTGTATATGGTCAGGATAATCGTGAAGGTGATGAGGAAGCAATGGAGGAGGACGAGGACGCAGACGCGGAGCCCGAAGTTGCGCCTATGTCCGTCGTTCTTCATGAGGACAAACGTTACTATCCTCAAGCTGTAGAAGTGTATGGACCCGACGTAGAGACAGTCGTCCAAGAAGAAGATACACAGGCTCTCGACAAACCCCTGGTAGAGCCTGTGAAACACAAGAAGTTCCAGGTTCAAGAACAGCAGCTACCAGAGACCACCTACGACATGGAGTACATGGCTGACATGTTAGATAATACTAACTTAATCAGAAATATTACGTTAATGGGCCACTTGCACAATGGAAAAACATCTTTTGTAGACTGTCTCATGAGACAGACACATCCTGGAACAATTAACAATGAGACAACAATACCTATAAGGTATACAGATACTCTGTTTGTGGAGCAAGAGCGAGGAGTGTCGATAAAGTCCATGCCGGTAACATTGCTATTGAAGGATATAAAGGGAAAGTCACATTTATTGAATATCATGGATACTCCAGGTCACGTGAACTTCAGTGATGAGGTGACTGCTGCTTTGCGGATATCGGATGGAGCGGTACTCTTTGTGGACGCTGCTGAAGGTATAATGCTCAACACGGAGCGAATGTTACGTCATGCAGTACAAGAAAGAATTCATTTAACTCTTTGCATCAACAAAATAGACAGGCTAATGCTTGAGCTAAAATTACCTCCTGCAGATGCCTATTATAAGCTCAGGCATATTATTGATGAGCTGAATTCTATGCTGGAGACCAATCAACCTCAGGATAATCCTGATGAGCCTCCAATTGTATTTTCACCACTTCTGGGTAATGTCTGCTTCGCGTCAACATTGTACGACGTGTGTTTCTCTCTGGAATCGTTTGCGGCGATGTACGCTGCCTCGTACCCTGCGTGCGGACTGCGGGCATCCGACATGGCGGGCTGGCTGTGGGGCGATGTCTACTTCAACGCGAAGACTAGACGCTTCACGAAGAAACAACCTCATGCCTCTGCTCAGAGAAGCTTCGTGGAGTTCATATTGGAGCCGCTGTACAAGATTTTTGCTCAAGTGGTGGGAGACGTGGACGACACCCTGCCAGCTGTGCTCACAGAACTCGGTATAAAGTTAACGAAGCAGGAAGCCAAACTGAACGTGCGTCCGCTACTCCGCCTCGTGTGCAGCAGGTTCTTCGGCGACTTCTGCGGGTTCGTGGAGATGGCGGTCCGGCACGTGCCGTCCCCACTGGACGCGGCGGCGCGCAAGGTGGCGCACTGCTACCGCGGCGCCGGCGGGGAGCTGCGTCAAGACATGCTGCACTGCGACCAGTCCGCGCGGCTCGTGGCGCACACCACCAAGATGTACCCCACCGACGACTGCGGCTTCTTCCTGGTACTGGCGCGTATCATGAGCGGGACGCTGTACGCCGGACAGACCGTGCGAGTCCTGGGTGAAAACTACAGCTCCCAGGATGAAGAGGACTCCAGGATCATGAACGTCGGAAGGCTCTGGATATATGAGGCTAGATATAAAGTGGAACTGAACCGCGTACCTGCCGGGTGCTGGGCCCTCATAGAAGGCATCGACCAGCCGATAGTGAAGACGTGCACCGTCGTGTCGGCGGAGGAGGACTGCGAGCTGCACACGTTCACTCCGCTCCGGTTCAACACTCAAGCCGTCGTCAAGATAGCCGTCGAGCCGGTCAACCCCTCGGAGCTACCCAAGATGCTGGATGGGCTGAGAAAGGTAAATAAGTCGTATCCACTACTGTCGACCCGGGTGGAGGAGTCAGGGGAACACGTGATATTGGGAACCGGTGAACTATATTTGGACTGCGTGATGCACGATCTGAGGAATATGTACTCCGAGATTGATATCAAAGGTATAAAATTATTGTTTTATTCGAAGACTGTTTTTGCAATTTTCAAACTAAGTTTTTAG

Protein

MDGDLYDEFGNYIGPDLESDSEDEQSVYGQDNREGDEEAMEEDEDADAEPEVAPMSVVLHEDKRYYPQAVEVYGPDVETVVQEEDTQALDKPLVEPVKHKKFQVQEQQLPETTYDMEYMADMLDNTNLIRNITLMGHLHNGKTSFVDCLMRQTHPGTINNETTIPIRYTDTLFVEQERGVSIKSMPVTLLLKDIKGKSHLLNIMDTPGHVNFSDEVTAALRISDGAVLFVDAAEGIMLNTERMLRHAVQERIHLTLCINKIDRLMLELKLPPADAYYKLRHIIDELNSMLETNQPQDNPDEPPIVFSPLLGNVCFASTLYDVCFSLESFAAMYAASYPACGLRASDMAGWLWGDVYFNAKTRRFTKKQPHASAQRSFVEFILEPLYKIFAQVVGDVDDTLPAVLTELGIKLTKQEAKLNVRPLLRLVCSRFFGDFCGFVEMAVRHVPSPLDAAARKVAHCYRGAGGELRQDMLHCDQSARLVAHTTKMYPTDDCGFFLVLARIMSGTLYAGQTVRVLGENYSSQDEEDSRIMNVGRLWIYEARYKVELNRVPAGCWALIEGIDQPIVKTCTVVSAEEDCELHTFTPLRFNTQAVVKIAVEPVNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRNMYSEIDIKGIKLLFYSKTVFAIFKLSF

Uniprot

H9JEK7   A0A2A4K199   A0A2H1WWK8   A0A3S2NN57   A0A194PW55   A0A212FBA6   + More
S4PMS1   A0A0N1IEM6   A0A1B6HIK8   A0A067QIX7   A0A2J7RS06   Q86NS3   B4IGZ0   Q9VAX8   A0A1I8N0K5   A0A2A3EHA7   A0A088AA44   A0A0K8UDA0   W8BF89   A0A1I8Q7R3   A0A151JX87   A0A0L7R6S7   A0A0M9AAF6   A0A034VA86   E9IPI9   A0A151WQR1   A0A151JA94   A0A1A9YIY8   A0A1B0BI59   A0A195CTJ3   A0A158NFM7   F4X0B9   A0A195AXX3   A0A1A9VQP0   A0A1A9X4Q6   A0A0L0CIS5   E1ZYI9   A0A026WKC1   A0A1Q3F5I6   A0A182HFH1   Q16Q70   A0A0C9RMR4   B4LYL2   A0A1B6D9P2   B0WWS7   E0VZ81   A0A1W4UPW4   A0A0A1X231   B4K8Q6   A0A3B0JM26   A0A3B0K0Q5   B4JVB3   N6UE82   B3P5U8   B4PR71   B3M027   A0A1Y1KV08   A0A182YJC4   A0A0A9YL11   A0A087TMS2   K7J2G1   D6WUJ3   T1HY83   A0A232F5H1   A0A0M4ER84   A0A182M733   Q29AG5   B4G6B5   A0A0K8SKT5   A0A182JTR4   B4NFG9   A0A182F8D3   A0A182R705   W5JL30   A0A182WEI5   A0A2M4AJQ4   A0A2M4BC66   A0A0V0G7G1   A0A084VIC2   A0A182PC90   A0A1S4H7B0   A0A182TJP6   A0A182XKM1   A0A182L4B1   A0A182HGX7   A0A182VF19   A0A224XFH3   A0A1B0FR65   A0A1A9Z254   A0A182R126   A0A336MK33   A0A182IYJ1   A0A2S2QY10   A0A182N2G9   J9JZF5   A0A336M985   A0A0J7KSF1   A0A2H8TK62   A0A0P5FIZ1   A0A0P6HIV4  

Pubmed

19121390    26354079    22118469    23622113    24845553    17994087    + More
10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    24495485    25348373    21282665    21347285    21719571    26108605    20798317    24508170    30249741    26483478    17510324    20566863    25830018    23537049    17550304    28004739    25244985    25401762    20075255    18362917    19820115    28648823    15632085    20920257    23761445    24438588    12364791    20966253   

EMBL

BABH01003239    BABH01003240    NWSH01000281    PCG77796.1    ODYU01011611    SOQ57455.1    + More
RSAL01000001    RVE55219.1    KQ459596    KPI95365.1    AGBW02009363    OWR51003.1    GAIX01003410    JAA89150.1    KQ460497    KPJ14323.1    GECU01033182    JAS74524.1    KK853292    KDR08844.1    NEVH01000596    PNF43616.1    BT003756    AAO41435.1    CH480837    EDW49108.1    AE014297    AY089551    AAF56769.1    AAL90289.1    KZ288249    PBC31100.1    GDHF01027979    GDHF01014192    JAI24335.1    JAI38122.1    GAMC01010977    JAB95578.1    KQ981620    KYN39227.1    KQ414646    KOC66456.1    KQ435700    KOX80507.1    GAKP01019518    GAKP01019517    GAKP01019516    JAC39434.1    GL764522    EFZ17523.1    KQ982824    KYQ50143.1    KQ979321    KYN21931.1    JXJN01014799    KQ977279    KYN04018.1    ADTU01014671    ADTU01014672    GL888497    EGI60077.1    KQ976716    KYM76892.1    JRES01000338    KNC32155.1    GL435225    EFN73743.1    KK107167    QOIP01000010    EZA56423.1    RLU18078.1    GFDL01012214    JAV22831.1    JXUM01036886    KQ561109    KXJ79678.1    CH477759    EAT36536.1    GBYB01003599    GBYB01008286    JAG73366.1    JAG78053.1    CH940650    EDW68032.1    GEDC01014936    JAS22362.1    DS232152    EDS36188.1    DS235850    EEB18687.1    GBXI01009356    GBXI01003333    JAD04936.1    JAD10959.1    CH933806    EDW15475.1    OUUW01000005    SPP81382.1    SPP81380.1    CH916374    EDV91433.1    APGK01038651    KB740963    KB630869    KB631639    ENN76962.1    ERL83912.1    ERL84891.1    CH954182    EDV53348.1    CM000160    EDW98435.1    CH902617    EDV44217.1    GEZM01073297    JAV65174.1    GBHO01013399    JAG30205.1    KK115938    KFM66411.1    KQ971357    EFA08376.1    ACPB03010711    NNAY01000959    OXU25728.1    CP012526    ALC47638.1    AXCM01001816    CM000070    EAL27385.1    CH479179    EDW23948.1    GBRD01012414    JAG53410.1    CH964251    EDW83036.1    ADMH02001252    ETN63464.1    GGFK01007695    MBW41016.1    GGFJ01001495    MBW50636.1    GECL01002845    JAP03279.1    ATLV01013344    KE524854    KFB37716.1    AAAB01008986    APCN01002367    GFTR01007878    JAW08548.1    CCAG010017703    AXCN02001071    UFQT01001486    SSX30762.1    GGMS01012809    MBY82012.1    ABLF02032933    UFQT01000265    SSX22608.1    LBMM01003653    KMQ93278.1    GFXV01002556    MBW14361.1    GDIQ01254630    JAJ97094.1    GDIQ01019026    JAN75711.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000053240    + More
UP000027135    UP000235965    UP000001292    UP000000803    UP000095301    UP000242457    UP000005203    UP000095300    UP000078541    UP000053825    UP000053105    UP000075809    UP000078492    UP000092443    UP000092460    UP000078542    UP000005205    UP000007755    UP000078540    UP000078200    UP000091820    UP000037069    UP000000311    UP000053097    UP000279307    UP000069940    UP000249989    UP000008820    UP000008792    UP000002320    UP000009046    UP000192221    UP000009192    UP000268350    UP000001070    UP000019118    UP000030742    UP000008711    UP000002282    UP000007801    UP000076408    UP000054359    UP000002358    UP000007266    UP000015103    UP000215335    UP000092553    UP000075883    UP000001819    UP000008744    UP000075881    UP000007798    UP000069272    UP000075900    UP000000673    UP000075920    UP000030765    UP000075885    UP000075902    UP000076407    UP000075882    UP000075840    UP000075903    UP000092444    UP000092445    UP000075886    UP000075880    UP000075884    UP000007819    UP000036403   

PRIDE

H9JEK7    Q86NS3    Q9VAX8   

Pfam

PF16004   EFTUD2        + More
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU
PF00679   EFG_C
PF03764   EFG_IV
PF14492   EFG_II

Interpro

IPR041095   EFG_II        + More
IPR031950   EFTUD2_N       
IPR009000   Transl_B-barrel_sf       
IPR027417   P-loop_NTPase       
IPR035655   U5-116kDa_C       
IPR005517   Transl_elong_EFG/EF2_IV       
IPR004161   EFTu-like_2       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR035647   EFG_III/V       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR000795   TF_GTP-bd_dom       
IPR000640   EFG_V-like       
IPR005225   Small_GTP-bd_dom       
IPR031157   G_TR_CS       

SUPFAM

SSF54980   SSF54980        + More
SSF52540   SSF52540       
SSF54211   SSF54211       
SSF50447   SSF50447       

Gene 3D

3.30.230.10    

CDD

cd04098  eEF2_C_snRNP

ProteinModelPortal

H9JEK7   A0A2A4K199   A0A2H1WWK8   A0A3S2NN57   A0A194PW55   A0A212FBA6   + More
S4PMS1   A0A0N1IEM6   A0A1B6HIK8   A0A067QIX7   A0A2J7RS06   Q86NS3   B4IGZ0   Q9VAX8   A0A1I8N0K5   A0A2A3EHA7   A0A088AA44   A0A0K8UDA0   W8BF89   A0A1I8Q7R3   A0A151JX87   A0A0L7R6S7   A0A0M9AAF6   A0A034VA86   E9IPI9   A0A151WQR1   A0A151JA94   A0A1A9YIY8   A0A1B0BI59   A0A195CTJ3   A0A158NFM7   F4X0B9   A0A195AXX3   A0A1A9VQP0   A0A1A9X4Q6   A0A0L0CIS5   E1ZYI9   A0A026WKC1   A0A1Q3F5I6   A0A182HFH1   Q16Q70   A0A0C9RMR4   B4LYL2   A0A1B6D9P2   B0WWS7   E0VZ81   A0A1W4UPW4   A0A0A1X231   B4K8Q6   A0A3B0JM26   A0A3B0K0Q5   B4JVB3   N6UE82   B3P5U8   B4PR71   B3M027   A0A1Y1KV08   A0A182YJC4   A0A0A9YL11   A0A087TMS2   K7J2G1   D6WUJ3   T1HY83   A0A232F5H1   A0A0M4ER84   A0A182M733   Q29AG5   B4G6B5   A0A0K8SKT5   A0A182JTR4   B4NFG9   A0A182F8D3   A0A182R705   W5JL30   A0A182WEI5   A0A2M4AJQ4   A0A2M4BC66   A0A0V0G7G1   A0A084VIC2   A0A182PC90   A0A1S4H7B0   A0A182TJP6   A0A182XKM1   A0A182L4B1   A0A182HGX7   A0A182VF19   A0A224XFH3   A0A1B0FR65   A0A1A9Z254   A0A182R126   A0A336MK33   A0A182IYJ1   A0A2S2QY10   A0A182N2G9   J9JZF5   A0A336M985   A0A0J7KSF1   A0A2H8TK62   A0A0P5FIZ1   A0A0P6HIV4  

PDB

6ID1     E-value=0,     Score=2183

KEGG

101736447    K12852 116 kDa U5 small nuclear ribonucleoprotein component | (RefSeq) 116 kDa U5 small nuclear ribo

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003924   GO:0005525   GO:0010628   GO:0005737   GO:0030532   GO:0003746   GO:0006414   GO:0005829   GO:0071011   GO:0005682   GO:0000398   GO:0071013   GO:0071007   GO:1990904   GO:0030623   GO:0046540   GO:0043565   GO:0005057   GO:0007165   GO:0016620   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

Length:

680

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02283

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00013

outside

1  -  680

 

 

Pi

261.606706

Theta

194.701617

Tajima's D

1.051874

CLR

0.003529

CSRT

0.674316284185791

Interpretation

Uncertain