Gene

KWMTBOMO08635  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007954

Annotation

PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Papilio_xuthus]

Location

Bomo_Chr15(-):1452066-1458172      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.629

CDS

ATGATCGCCGAACCTCTGGAGCGGGGTCTCGCCGAGGACATAGAGACGGGCGCGGTCTGCGTGTCCTGGGACAGGAAGAGGCTAGGAGAATTCTTCCAGACGAAATACGATTGGGATCTTCTGGCTGCCCGTTCGATTTGGGCCTTCGGTCCCGACACGATGGGACCCAACATTCTAGTCGATGACACTCTACCCTCCGAAGTGGACAAGCATCTCCTGGCTTCGGTCAAGGATAGCATTGTTCAAGGCTTCCAGTGGGGTACGCGGGAAGGGCCGCTCTGTGAGGAGCCCATCAGGAACGTGAAATTCAAGATCCTGGATGCTGTCATCGCGCAGGAGCCGCTGCACCGGGGCGGCGGACAGATCATCCCCACGGCGCGACGCGTGGCGTATTCAGCATTTCTAATGGCGACCCCTCGTCTGATGGAGCCGTATCTGTTTGTTGAGGTGCAAGCGCCGGCCGACTGCGTATCCGCCGTCTACACGGTGCTGGCTAAGAGGAGAGGTCACGTGACCCAGGACGCTCCGGTCCCCGGGTCGCCGCTCTACACCATCAAAGCGTTCGTCCCGGCCATAGACTCGTTCGGCTTCGAGACCGACCTGCGCACGCACACGCAGGGCCAGGCCTTCTGTCTGCAGGTCTTCCATCACTGGCAGATCGTGCCCGGCGACCCGCTCGACAAGAGTATTGTTATCAGGCCATTGGAACCACAGCCAGCGACGCATTTAGCCAGAGAGTTCATGATCAAGACCCGTCGACGCAAGGGGCTCAGTGAGGACGTGTCCATCAATAAGTTTTTCGACGATCCTATGTTGTTGGAGCTGGCAAGACAAGACGTACAACTTCATTAA

Protein

MIAEPLERGLAEDIETGAVCVSWDRKRLGEFFQTKYDWDLLAARSIWAFGPDTMGPNILVDDTLPSEVDKHLLASVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFVPAIDSFGFETDLRTHTQGQAFCLQVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFDDPMLLELARQDVQLH

Uniprot

H9JEK7   A0A2H1WWK8   A0A2A4K199   A0A194PW55   S4PMS1   A0A212FBA6   + More
A0A3S2NN57   A0A0N0PCN0   A0A067QIX7   A0A1B6HIK8   A0A2J7RS06   A0A2J7RS04   A0A1B6D9P2   A0A1B6MC59   A0A1B6MHM7   E0VZ81   A0A1S4ESC0   D6WUJ3   N6UE82   B0WWS7   A0A0C9RMR4   J9JZF5   A0A1B0CQ01   E9IPI9   A0A2H8TK62   A0A0V0G7G1   A0A2S2QY10   A0A0L7R6S7   A0A0M9AAF6   A0A2A3EHA7   A0A0J7KSF1   A0A088AA44   A0A026WKC1   A0A1L8DRD5   E1ZYI9   A0A0K8SKT5   A0A0A9YL11   A0A2J7RS09   A0A1B6GX49   A0A1B0D869   A0A1Y1KV08   A0A336MK33   A0A336M985   A0A1Q3F5I6   A0A2P6KJQ4   E2BDL4   A0A444TJ71   A0A3B0K8N2   A0A3B0K0Q5   Q29AG5   B4G6B5   B4PR71   A0A087TMS2   A0A1S3KA13   R7UIG8   A0A195CTJ3   A0A0M4ER84   T1IT65   F4X0B9   A0A195AXX3   A0A151JX87   A0A158NFM7   A0A151WQR1   Q9VAX8   A0A151JA94   B4K8Q6   B3M027   B4IGZ0   B3P5U8   A0A1W4UPW4   A0A0N7Z9R9   B4LYL2   W8BF89   A0A2G8JRZ3   W4YF97   A0A0T6BCL2   A0A0A1X231   A0A3Q2WH55   A0A3Q4HVS6   H3AYF8   A0A023GP57   A0A224YRL6   A0A1I8N0K5   A0A131YJM8   A0A0L0CIS5   A0A146W467   A0A154MKH2   A0A3Q0RPH3   I3IX14   A0A3P8NAZ7   A0A3P9D7S6   A0A3B4G438   A7SGZ8   A0A131XVI4   L7M295   A0A131XA69   A0A1E1XAQ4   A0A1I8Q7R3   A0A1A8LTB7   F1Q6N0  

Pubmed

19121390    26354079    23622113    22118469    24845553    20566863    + More
18362917    19820115    23537049    21282665    24508170    30249741    20798317    25401762    28004739    15632085    17994087    17550304    26383154    23254933    21719571    21347285    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    29023486    25830018    25186727    9215903    28797301    25315136    26830274    26108605    17615350    25576852    28049606    28503490    23594743   

EMBL

BABH01003239    BABH01003240    ODYU01011611    SOQ57455.1    NWSH01000281    PCG77796.1    + More
KQ459596    KPI95365.1    GAIX01003410    JAA89150.1    AGBW02009363    OWR51003.1    RSAL01000001    RVE55219.1    KQ460497    KPJ14322.1    KK853292    KDR08844.1    GECU01033182    JAS74524.1    NEVH01000596    PNF43616.1    PNF43618.1    GEDC01014936    JAS22362.1    GEBQ01006469    JAT33508.1    GEBQ01004588    JAT35389.1    DS235850    EEB18687.1    KQ971357    EFA08376.1    APGK01038651    KB740963    KB630869    KB631639    ENN76962.1    ERL83912.1    ERL84891.1    DS232152    EDS36188.1    GBYB01003599    GBYB01008286    JAG73366.1    JAG78053.1    ABLF02032933    AJWK01022899    GL764522    EFZ17523.1    GFXV01002556    MBW14361.1    GECL01002845    JAP03279.1    GGMS01012809    MBY82012.1    KQ414646    KOC66456.1    KQ435700    KOX80507.1    KZ288249    PBC31100.1    LBMM01003653    KMQ93278.1    KK107167    QOIP01000010    EZA56423.1    RLU18078.1    GFDF01005085    JAV08999.1    GL435225    EFN73743.1    GBRD01012414    JAG53410.1    GBHO01013399    JAG30205.1    PNF43617.1    GECZ01002770    JAS66999.1    AJVK01027237    AJVK01027238    AJVK01027239    GEZM01073297    JAV65174.1    UFQT01001486    SSX30762.1    UFQT01000265    SSX22608.1    GFDL01012214    JAV22831.1    MWRG01010374    PRD26562.1    GL447678    EFN86176.1    SAUD01002318    RXG70006.1    OUUW01000005    SPP81381.1    SPP81380.1    CM000070    EAL27385.1    CH479179    EDW23948.1    CM000160    EDW98435.1    KK115938    KFM66411.1    AMQN01007442    KB300721    ELU06359.1    KQ977279    KYN04018.1    CP012526    ALC47638.1    JH431465    GL888497    EGI60077.1    KQ976716    KYM76892.1    KQ981620    KYN39227.1    ADTU01014671    ADTU01014672    KQ982824    KYQ50143.1    AE014297    AY089551    AAF56769.1    AAL90289.1    KQ979321    KYN21931.1    CH933806    EDW15475.1    CH902617    EDV44217.1    CH480837    EDW49108.1    CH954182    EDV53348.1    GDRN01111136    GDRN01111135    GDRN01111134    JAI56816.1    CH940650    EDW68032.1    GAMC01010977    JAB95578.1    MRZV01001353    PIK38480.1    AAGJ04048159    AAGJ04048160    AAGJ04048161    LJIG01001891    KRT85049.1    GBXI01009356    GBXI01003333    JAD04936.1    JAD10959.1    AFYH01110478    AFYH01110479    AFYH01110480    GBBM01000453    JAC34965.1    GFPF01005468    MAA16614.1    GEDV01009855    JAP78702.1    JRES01000338    KNC32155.1    GCES01062499    JAR23824.1    GCES01062500    JAR23823.1    AERX01007582    DS469656    EDO37021.1    GEFM01004502    JAP71294.1    GACK01006879    JAA58155.1    GEFH01004842    JAP63739.1    GFAC01002850    JAT96338.1    HAEF01008754    SBR47189.1    CR388224   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000053240    + More
UP000027135    UP000235965    UP000009046    UP000079169    UP000007266    UP000019118    UP000030742    UP000002320    UP000007819    UP000092461    UP000053825    UP000053105    UP000242457    UP000036403    UP000005203    UP000053097    UP000279307    UP000000311    UP000092462    UP000008237    UP000288706    UP000268350    UP000001819    UP000008744    UP000002282    UP000054359    UP000085678    UP000014760    UP000078542    UP000092553    UP000007755    UP000078540    UP000078541    UP000005205    UP000075809    UP000000803    UP000078492    UP000009192    UP000007801    UP000001292    UP000008711    UP000192221    UP000008792    UP000230750    UP000007110    UP000264840    UP000261580    UP000008672    UP000095301    UP000037069    UP000261340    UP000005207    UP000265100    UP000265160    UP000261460    UP000001593    UP000095300    UP000000437   

PRIDE

H9JEK7    Q9VAX8    L7M295    F1Q6N0   

Pfam

PF16004   EFTUD2        + More
PF03144   GTP_EFTU_D2
PF00009   GTP_EFTU
PF00679   EFG_C
PF03764   EFG_IV
PF14492   EFG_II

Interpro

IPR041095   EFG_II        + More
IPR031950   EFTUD2_N       
IPR009000   Transl_B-barrel_sf       
IPR027417   P-loop_NTPase       
IPR035655   U5-116kDa_C       
IPR005517   Transl_elong_EFG/EF2_IV       
IPR004161   EFTu-like_2       
IPR020568   Ribosomal_S5_D2-typ_fold       
IPR035647   EFG_III/V       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR000795   TF_GTP-bd_dom       
IPR000640   EFG_V-like       
IPR005225   Small_GTP-bd_dom       
IPR031157   G_TR_CS       

SUPFAM

SSF54980   SSF54980        + More
SSF52540   SSF52540       
SSF54211   SSF54211       
SSF50447   SSF50447       

Gene 3D

3.30.230.10    

CDD

cd04098  eEF2_C_snRNP

ProteinModelPortal

H9JEK7   A0A2H1WWK8   A0A2A4K199   A0A194PW55   S4PMS1   A0A212FBA6   + More
A0A3S2NN57   A0A0N0PCN0   A0A067QIX7   A0A1B6HIK8   A0A2J7RS06   A0A2J7RS04   A0A1B6D9P2   A0A1B6MC59   A0A1B6MHM7   E0VZ81   A0A1S4ESC0   D6WUJ3   N6UE82   B0WWS7   A0A0C9RMR4   J9JZF5   A0A1B0CQ01   E9IPI9   A0A2H8TK62   A0A0V0G7G1   A0A2S2QY10   A0A0L7R6S7   A0A0M9AAF6   A0A2A3EHA7   A0A0J7KSF1   A0A088AA44   A0A026WKC1   A0A1L8DRD5   E1ZYI9   A0A0K8SKT5   A0A0A9YL11   A0A2J7RS09   A0A1B6GX49   A0A1B0D869   A0A1Y1KV08   A0A336MK33   A0A336M985   A0A1Q3F5I6   A0A2P6KJQ4   E2BDL4   A0A444TJ71   A0A3B0K8N2   A0A3B0K0Q5   Q29AG5   B4G6B5   B4PR71   A0A087TMS2   A0A1S3KA13   R7UIG8   A0A195CTJ3   A0A0M4ER84   T1IT65   F4X0B9   A0A195AXX3   A0A151JX87   A0A158NFM7   A0A151WQR1   Q9VAX8   A0A151JA94   B4K8Q6   B3M027   B4IGZ0   B3P5U8   A0A1W4UPW4   A0A0N7Z9R9   B4LYL2   W8BF89   A0A2G8JRZ3   W4YF97   A0A0T6BCL2   A0A0A1X231   A0A3Q2WH55   A0A3Q4HVS6   H3AYF8   A0A023GP57   A0A224YRL6   A0A1I8N0K5   A0A131YJM8   A0A0L0CIS5   A0A146W467   A0A154MKH2   A0A3Q0RPH3   I3IX14   A0A3P8NAZ7   A0A3P9D7S6   A0A3B4G438   A7SGZ8   A0A131XVI4   L7M295   A0A131XA69   A0A1E1XAQ4   A0A1I8Q7R3   A0A1A8LTB7   F1Q6N0  

PDB

6ID1     E-value=1.30184e-154,     Score=1400

KEGG

101736447    K12852 116 kDa U5 small nuclear ribonucleoprotein component | (RefSeq) 116 kDa U5 small nuclear ribo

GO

GO:0003924   GO:0005525   GO:0005829   GO:0003746   GO:0071007   GO:0000398   GO:1990904   GO:0030623   GO:0046540   GO:0005737   GO:0010628   GO:0030532   GO:0006414   GO:0071011   GO:0005682   GO:0071013   GO:0060322   GO:0043010   GO:0048666   GO:0045664   GO:0006355   GO:0043565   GO:0005057   GO:0007165   GO:0016620   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

Length:

283

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02404

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00668

outside

1  -  283

 

 

Pi

216.84343

Theta

168.169387

Tajima's D

1.313199

CLR

0.000209

CSRT

0.743412829358532

Interpretation

Uncertain