Gene

KWMTBOMO08634  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007955

Annotation

hypothetical_protein_KGM_01538_[Danaus_plexippus]

Location

Bomo_Chr15(-):1444869-1449812      View in EpiBrowser

Full name

Probable ribosome production factor 1      

Alternative Name

Ribosome biogenesis protein RPF1

Location in the cell

Nuclear   Reliability : 4.32

CDS

ATGGCTCGTGGAAAGGATAAAAAAAAACGCAAGTTAGAAAAGAAACAAGAGGGAGATGATGTACCTAAGAAAATCCCTCACACGTTGGAAACTCTTCGTGAAAAAGATGAGACGATGCTCGTTAATGCTGACACCGAGGAACAAGAGGAGGCACAAAAAGATATGGAACTTGATGAACTTTCAACATACTATGAGAATTCGTATGAGCCAAAAGTGCTGATCACATACTCTGATAATCCACACAGTAAAACTAGAATATTCGGAAGAGAACTGACTAGGATTATACCTAATTCTTTATCGAGATACAGACAGAGGTCATCAGTGAAACGTATAGTACAATCAGCAATCAGAGAAGACGTCACAGATGTGATTATAATTAATGAGAACCAACGGCAGCCTAATGGTTTTCTTCTCATCCATTTGCCTGCAGGTCCCACTGCGCACTTCCGTCTTTCTAGCTACCAGAGGTCGTCCTCAACAACTTCAGTACACGATTGGGTCTGA

Protein

MARGKDKKKRKLEKKQEGDDVPKKIPHTLETLREKDETMLVNADTEEQEEAQKDMELDELSTYYENSYEPKVLITYSDNPHSKTRIFGRELTRIIPNSLSRYRQRSSVKRIVQSAIREDVTDVIIINENQRQPNGFLLIHLPAGPTAHFRLSSYQRSSSTTSVHDWV

Description

May be required for ribosome biogenesis.

Keywords

Complete proteome   Nucleus   Reference proteome   Ribosome biogenesis   RNA-binding   rRNA processing   rRNA-binding  

Feature

chain  Probable ribosome production factor 1

Uniprot

H9JEK8   A0A1E1VZR5   A0A212EYL4   A0A3S2MAL1   A0A2H1WYJ3   A0A2A4K161   + More
A0A194PQX6   A0A0N0PD15   S4P272   A0A2J7RG04   A0A2J7RG25   V5GF00   F4WHG9   A0A2J7RG17   A0A158N933   A0A1Y1KTM5   A0A195FU19   A0A0N0BFX7   A0A067QIZ0   A0A1W4WU45   D6WGH3   E2A6R2   A0A151X4Q2   A0A0J7K897   A0A1J1ISH1   A0A151IQ65   A0A232EV81   K7ITH8   A0A026VY58   A0A088ALI3   E2BSA6   A0A195BUV9   A0A0L7QMJ7   A0A151J863   A0A1I8PMP0   A0A336L1R1   A0A154P2V0   A0A1I8MCX0   A0A1W4VB28   T1PAI8   B4Q3Q1   A0A2A3E8P1   W8BS10   B3MVH7   B4P1Y5   B4IE63   D3TPY9   A0A1A9WKW3   A0A1B0CSC9   B3N3X3   Q9VKB4   A0A1B0FBV4   A0A034WHK6   A0A034WFZ9   A0A1A9UL16   A0A3B0K0U3   A0A0K8VYJ9   A0A0A1WYA7   A0A1A9XCS3   A0A1B0C454   B4N772   A0A1B6KQC3   N6UM87   A0A1L8DG24   Q29NK6   A0A170YNZ4   B4GQK3   A0A1B0D141   A0A069DR55   A0A0L0C6C4   B4KI01   A0A1Q3F1M4   A0A0M4E696   A0A1B6EXZ7   A0A1L8DG36   B4LSF5   B0WPW6   B4JBL6   A0A0A9WF81   A0A224XTC4   A0A1S4F9I7   A0A0V0G8E4   Q17BF6   A0A1B6JQ02   A0A2M4AP89   A0A2M4AKL6   A0A2M4AKI6   A0A182F2A7   A0A2M3Z8G6   A0A2M4BRC4   A0A2M3Z7I5   A0A2M4BRD0   W5J427   A0A2M4CQI9   A0A0T6BD34   A0A182RWS9   A0A0P4VMU7   E0VHX2  

Pubmed

19121390    22118469    26354079    23622113    21719571    21347285    + More
28004739    24845553    18362917    19820115    20798317    28648823    20075255    24508170    30249741    25315136    17994087    22936249    24495485    17550304    20353571    10731132    12537572    12537569    25348373    25830018    23537049    15632085    26334808    26108605    25401762    26823975    17510324    20920257    23761445    27129103    20566863   

EMBL

BABH01003240    BABH01003241    GDQN01010903    JAT80151.1    AGBW02011483    OWR46575.1    + More
RSAL01000001    RVE55220.1    ODYU01011611    SOQ57454.1    NWSH01000281    PCG77799.1    KQ459596    KPI95363.1    KQ460497    KPJ14320.1    GAIX01012165    JAA80395.1    NEVH01004406    PNF39769.1    PNF39770.1    GALX01008204    JAB60262.1    GL888161    EGI66323.1    PNF39768.1    ADTU01009059    GEZM01075835    JAV63928.1    KQ981268    KYN43921.1    KQ435794    KOX73741.1    KK853463    KDR07446.1    KQ971321    EFA00559.1    GL437184    EFN70879.1    KQ982543    KYQ55357.1    LBMM01012056    KMQ86441.1    CVRI01000055    CRL01473.1    KQ976785    KYN08304.1    NNAY01002042    OXU22245.1    AAZX01003331    KK107638    QOIP01000004    EZA48406.1    RLU23505.1    GL450157    EFN81419.1    KQ976405    KYM91865.1    KQ414889    KOC59843.1    KQ979640    KYN20047.1    UFQS01001365    UFQT01001365    SSX10529.1    SSX30215.1    KQ434807    KZC06153.1    KA645170    AFP59799.1    CM000361    CM002910    EDX04776.1    KMY89875.1    KZ288324    PBC28087.1    GAMC01002400    JAC04156.1    CH902624    EDV33242.1    CM000157    EDW88156.1    CH480831    EDW45890.1    EZ423491    ADD19767.1    AJWK01008028    AJWK01025908    CH954177    EDV58825.1    AE014134    AY051683    CCAG010019860    GAKP01005734    JAC53218.1    GAKP01005735    JAC53217.1    OUUW01000006    SPP81450.1    GDHF01008377    JAI43937.1    GBXI01010914    JAD03378.1    JXJN01025274    CH964182    EDW80213.1    GEBQ01026328    JAT13649.1    APGK01026508    KB740635    KB631992    ENN79827.1    ERL87766.1    GFDF01008676    JAV05408.1    CH379059    EAL34213.2    GEMB01003106    JAS00103.1    CH479187    EDW39875.1    AJVK01010182    GBGD01002336    JAC86553.1    JRES01000905    JRES01000841    KNC27370.1    KNC27830.1    CH933807    EDW11283.1    GFDL01013591    JAV21454.1    CP012523    ALC38065.1    ALC39381.1    GECZ01026952    JAS42817.1    GFDF01008675    JAV05409.1    CH940649    EDW64777.1    DS232030    EDS32554.1    CH916368    EDW04039.1    GBHO01038456    GBRD01012575    GDHC01004851    JAG05148.1    JAG53249.1    JAQ13778.1    GFTR01004654    JAW11772.1    GECL01001939    JAP04185.1    CH477322    EAT43588.1    GECU01006501    JAT01206.1    GGFK01009268    MBW42589.1    GGFK01008015    MBW41336.1    GGFK01007985    MBW41306.1    GGFM01004029    MBW24780.1    GGFJ01006496    MBW55637.1    GGFM01003699    MBW24450.1    GGFJ01006495    MBW55636.1    ADMH02002168    ETN58088.1    GGFL01003422    MBW67600.1    LJIG01001682    KRT85258.1    GDKW01002948    JAI53647.1    DS235172    EEB12978.1   

Proteomes

UP000005204    UP000007151    UP000283053    UP000218220    UP000053268    UP000053240    + More
UP000235965    UP000007755    UP000005205    UP000078541    UP000053105    UP000027135    UP000192223    UP000007266    UP000000311    UP000075809    UP000036403    UP000183832    UP000078542    UP000215335    UP000002358    UP000053097    UP000279307    UP000005203    UP000008237    UP000078540    UP000053825    UP000078492    UP000095300    UP000076502    UP000095301    UP000192221    UP000000304    UP000242457    UP000007801    UP000002282    UP000001292    UP000091820    UP000092461    UP000008711    UP000000803    UP000092444    UP000078200    UP000268350    UP000092443    UP000092460    UP000007798    UP000019118    UP000030742    UP000001819    UP000008744    UP000092462    UP000037069    UP000009192    UP000092553    UP000008792    UP000002320    UP000001070    UP000008820    UP000069272    UP000000673    UP000075900    UP000009046   

PRIDE

H9JEK8    Q9VKB4   

Pfam

PF04427   Brix

Interpro

IPR007109   Brix       

ProteinModelPortal

H9JEK8   A0A1E1VZR5   A0A212EYL4   A0A3S2MAL1   A0A2H1WYJ3   A0A2A4K161   + More
A0A194PQX6   A0A0N0PD15   S4P272   A0A2J7RG04   A0A2J7RG25   V5GF00   F4WHG9   A0A2J7RG17   A0A158N933   A0A1Y1KTM5   A0A195FU19   A0A0N0BFX7   A0A067QIZ0   A0A1W4WU45   D6WGH3   E2A6R2   A0A151X4Q2   A0A0J7K897   A0A1J1ISH1   A0A151IQ65   A0A232EV81   K7ITH8   A0A026VY58   A0A088ALI3   E2BSA6   A0A195BUV9   A0A0L7QMJ7   A0A151J863   A0A1I8PMP0   A0A336L1R1   A0A154P2V0   A0A1I8MCX0   A0A1W4VB28   T1PAI8   B4Q3Q1   A0A2A3E8P1   W8BS10   B3MVH7   B4P1Y5   B4IE63   D3TPY9   A0A1A9WKW3   A0A1B0CSC9   B3N3X3   Q9VKB4   A0A1B0FBV4   A0A034WHK6   A0A034WFZ9   A0A1A9UL16   A0A3B0K0U3   A0A0K8VYJ9   A0A0A1WYA7   A0A1A9XCS3   A0A1B0C454   B4N772   A0A1B6KQC3   N6UM87   A0A1L8DG24   Q29NK6   A0A170YNZ4   B4GQK3   A0A1B0D141   A0A069DR55   A0A0L0C6C4   B4KI01   A0A1Q3F1M4   A0A0M4E696   A0A1B6EXZ7   A0A1L8DG36   B4LSF5   B0WPW6   B4JBL6   A0A0A9WF81   A0A224XTC4   A0A1S4F9I7   A0A0V0G8E4   Q17BF6   A0A1B6JQ02   A0A2M4AP89   A0A2M4AKL6   A0A2M4AKI6   A0A182F2A7   A0A2M3Z8G6   A0A2M4BRC4   A0A2M3Z7I5   A0A2M4BRD0   W5J427   A0A2M4CQI9   A0A0T6BD34   A0A182RWS9   A0A0P4VMU7   E0VHX2  

PDB

6EM5     E-value=8.29648e-09,     Score=139

KEGG

101736576    K14846 ribosome production factor 1 | (RefSeq) probable ribosome production factor 1

GO

GO:0005730   GO:0030687   GO:0006364   GO:0042254   GO:0019843   GO:0003723  

Subcellular location

  

Length:

167

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07294

Exp number, first 60 AAs:

0

Total prob of N-in:

0.70727

inside

1  -  167

 

 

Pi

258.147294

Theta

236.268567

Tajima's D

1.266575

CLR

0.004063

CSRT

0.737263136843158

Interpretation

Uncertain