SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08627  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007628
Annotation
PREDICTED:_uncharacterized_protein_LOC106708416_[Papilio_machaon]
Location in the cell
Extracellular   Reliability : 3.613
 

Sequence

CDS
ATGTCGTTGAAAACGCTAGTCTTCTGTGTTTGCGTTACTTTAGCTTCGGCGGCGATACAGCGCTCTGCTTTGGAGCCAATCCCTGATAAATTTAGTGGCCTTCAAGGCTGTTACATCAGGGAGTTCGATGGTGTCCTTCCCTTTGATTCTGTAACATACTCGAAGGAAGCTGAATGCACCCGATACTTCTGCGCGCACGATGCTGTCATACACCAATCGTGTAAAGATGAGCTGAGCACAGACACCCCTGTATGTACCTTTACCAAAACAGAAGAAAAACGTGACACAATCTGCATTCTTTGA
Protein
MSLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTPVCTFTKTEEKRDTICIL

Summary

Pfam
PF15430   SVWC
Interpro
IPR029277   SVWC_dom       

Ontologies

GO

Topology

SignalP
Position:   1 - 17,         Likelihood:  0.988474
 
 
Length:
100
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.50189
Exp number, first 60 AAs:
1.50189
Total prob of N-in:
0.19994
outside
1  -  100
 
 

Population Genetic Test Statistics

Pi
241.595002
Theta
159.867251
Tajima's D
1.803605
CLR
0.987519
CSRT
0.849557522123894
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
24402669 YFCAHDAVIHQSCK 96.43 5e-15
27102218 SAIEPIPDK 96.43 5e-15
28467696 YFATSPGGVAHER 96.43 5e-15
29197581 FEETSIQFPMCR 96.43 5e-15
25044914 YFASEIAQTITSK 100.00 1e-04
24093152 YEVVNGR 100.00 1e-04
24402669 YFAHNCENFPVPHHTQR 100.00 1e-04
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