Gene

KWMTBOMO08616

Pre Gene Modal

BGIBMGA007961

Annotation

PREDICTED:_RNA-binding_protein_45_[Papilio_xuthus]

Location

Bomo_Chr15(-):976969-978402      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.958

CDS

ATGTACCTACCAAGGGACCGCAACACAGGCGAGACTAGAGGTATCGCTTACATTAAATATGCTAAAACATCATCAGCAGCCACTGCCATAGAGGAATTACACATGACTACCTTACTTGACAATCACAAACCCATCAAAGTTATGGTCGCCTCTGACAAAAATGACTATCAAAGTAACAGTTACGACAAATACAGAAGACTATTTATCAAAGTTCCCAAAACGATGACTGAGAAAGAAATTCGGCAATATTTTTCCAGTTATGGAAAAGTTGAGTCAGTGCGTTTACAGAGAGACAAATTGACTGACGAAAGTAAAGGATTTGCTTATGTGAATTTTACAACTTTTTCGGAAACTGCGAAAGCGTTTGAGCAGTGTGATAAAACGTATAAAGCTATTTTTGCCACACCGAAAGATGAGCTTAAAAGGCCCAGGAACAGTTTAGAAGGACTTGACTGCTATTCCAGTAATTCTAATCTAACTAAATCTCATGTTTATGCTGATCACGGCCATCATGTTAACGATGAGTTTAATAAAGATTATTTGACATTAATTTCAAAGACTAAAGAACAAGACTTTGACACTGTGTCAGTTAAATGCACACCACCAGTGCTACAAAAACACCTTGAAAGACTGTTTAATATTGTACCAGGAATGATTGAATTTAAATACACTATGGACCAAGGTAACCGTGTTTGTCGAGCATCAGTTACATATGACAGTCAAAAGGCAGCAGCTTATTCTGTCGAAACTATAAATAATTTTGAATATCCATCTGGAGAGGTTATCAGTGTTAAACCTGACATTAGCCCACTCACCAAAGCAACTTCTACCTTGAATAACATAGTTAATAATATTAAAAACTCTGTAGATGGAAACCCAAATCTATTGCAGCTTGCAGATGCCATAGCACAGGCTTCCTCGTTAATAAAAACAGCTACAATTGGAAGGAAAAGCCCAATAGATGATAAAGATGATGGTTTCTGTAATGTATGTCTTCCCCCTATAAAACCCTTGGCTAGCAGTAACTGCAGAGTCGCTCAGAGATGTTTCTTAGTCTTTAGACCCCATCCACCTCCCATGGCAGCTTTGATGAATGCTTTTTGTAGATTTGGTGGCCTCATAGAAATAACGACATACCCTAACAAGAATTTTGCTTTTGCTAAATATGATTCAGTGAAGTCAGCACAGGAAGCAATTAAAACTCTAAATGGTGCAACTTTATGTGGGGTGAATCTGAAAGTGTTGGAGGCTGAGGAAAAAAATACGAAAGAGAAGATGTGTGTTGACGATGATGATGACATAGAGAGAAAACGGATGAAGTTAAACAACAAAGACTGA

Protein

MYLPRDRNTGETRGIAYIKYAKTSSAATAIEELHMTTLLDNHKPIKVMVASDKNDYQSNSYDKYRRLFIKVPKTMTEKEIRQYFSSYGKVESVRLQRDKLTDESKGFAYVNFTTFSETAKAFEQCDKTYKAIFATPKDELKRPRNSLEGLDCYSSNSNLTKSHVYADHGHHVNDEFNKDYLTLISKTKEQDFDTVSVKCTPPVLQKHLERLFNIVPGMIEFKYTMDQGNRVCRASVTYDSQKAAAYSVETINNFEYPSGEVISVKPDISPLTKATSTLNNIVNNIKNSVDGNPNLLQLADAIAQASSLIKTATIGRKSPIDDKDDGFCNVCLPPIKPLASSNCRVAQRCFLVFRPHPPPMAALMNAFCRFGGLIEITTYPNKNFAFAKYDSVKSAQEAIKTLNGATLCGVNLKVLEAEEKNTKEKMCVDDDDDIERKRMKLNNKD

Uniprot

H9JEL4   A0A2A4JB17   A0A2H1W7R2   A0A194PRH3   A0A0L7L239   A0A212F6B7   + More
A0A0N1IB74   A0A2W1BMM2   A0A1E1WP80   A0A212EMG8   A0A0L7L5W8   A0A2A4JV65   A0A2H1VW40   E2AVF6   A0A3L8D8N4   A0A0J7KF68   K7J4Y3   A0A154PFM7   A0A0L7R064   A0A2A3EM65   A0A088AKI4   A0A195EHQ8   E2BRV3   A0A195FBA9   A0A232FCL6   A0A195B9Y8   A0A158NK93   F4W8J2   A0A1W4W9L0   A0A151X744   A0A151I7W0   A0A0T6B3Y4   D6WN04   A0A026VRJ8   A0A1Y1M913   U5EVX4   A0A2J7PTS0   A0A1D2MZ03   A0A1B6D106   A0A1L8DG18   A0A3B0J5C9   B4NLY7   A0A1W4VV05   B4HU42   B4QQJ6   Q9VZE4   A0A0K8UVM9   A0A034WG12   N6UQ96   U4U532   B3NC18   A0A0A1X0Y1   Q29EG5   B4H1Z5   W8C6B7   A0A0R3P944   A0A067QS74   A0A2J7PTS7   E9FQR9   Q7ZXD8   A0A1D8MB84   A0A0K2TAK8   A0A1B6IKB6   A0A1S3MU34   A0A3P8Z8C2   A0A1L8EWD7   A0A0P5JCV8   A0A0P5UYM5   A0A0P6DJA7   A0A1S3P0F0   A0A0P6ASX9   A0A0P5DFQ6   A0A0P5DDV3   A0A060XXB4   A0A0P6H6V6   A0A087XLI1   A0A3B3U5D3   A0A3B3Y1C2   A0A0V0G6D1   W5KJA7   A0A3P9NAT9   A0A0P6EPT0   A0A3B5R8Z1   W5MIU1   W5UE65   W5MIV8   S4RDG7   R7UCE8   B0S522   A0A0P4YCE4   F7EFV3   A0A091HPB5   A0A3B4EBL8   A0A3P8YZ58   A0A3Q3DNB2   A0A1W4ZLG0   A0A3B3R2X1   A0A1A7YP66  

Pubmed

19121390    26354079    26227816    22118469    28756777    20798317    + More
30249741    20075255    28648823    21347285    21719571    18362917    19820115    24508170    28004739    27289101    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25348373    23537049    25830018    15632085    24495485    23185243    24845553    21292972    27762356    25069045    24755649    25329095    23542700    23127152    23254933    23594743    20431018    29240929   

EMBL

BABH01003301    NWSH01002297    PCG68620.1    ODYU01006885    SOQ49129.1    KQ459596    + More
KPI95349.1    JTDY01003564    KOB69334.1    AGBW02010064    OWR49268.1    KQ459717    KPJ20283.1    KZ150142    PZC72933.1    GDQN01002260    JAT88794.1    AGBW02013840    OWR42678.1    JTDY01002798    KOB70706.1    NWSH01000550    PCG75699.1    ODYU01004639    SOQ44722.1    GL443090    EFN62590.1    QOIP01000011    RLU16664.1    LBMM01008376    KMQ88929.1    KQ434889    KZC10254.1    KQ414672    KOC64217.1    KZ288217    PBC32372.1    KQ978881    KYN27788.1    GL450042    EFN81586.1    KQ981693    KYN37666.1    NNAY01000415    OXU28561.1    KQ976537    KYM81348.1    ADTU01018741    GL887908    EGI69483.1    KQ982472    KYQ56118.1    KQ978406    KYM94160.1    LJIG01016108    KRT81591.1    KQ971343    EFA04331.1    KK111471    EZA46398.1    GEZM01038787    GEZM01038786    JAV81508.1    GANO01001676    JAB58195.1    NEVH01021221    PNF19736.1    LJIJ01000375    ODM98171.1    GEDC01022504    GEDC01017951    GEDC01016136    GEDC01001612    JAS14794.1    JAS19347.1    JAS21162.1    JAS35686.1    GFDF01008774    JAV05310.1    OUUW01000002    SPP77164.1    CH964278    EDW85355.2    CH480817    EDW50463.1    CM000363    CM002912    EDX09202.1    KMY97558.1    AE014296    BT001728    AAF47879.2    AAN71483.1    GDHF01021663    GDHF01020992    GDHF01008547    JAI30651.1    JAI31322.1    JAI43767.1    GAKP01005319    GAKP01005318    GAKP01005317    JAC53634.1    APGK01021350    APGK01021351    KB740314    ENN80912.1    KB631743    ERL85711.1    CH954178    EDV50906.1    GBXI01012929    GBXI01011110    GBXI01009877    JAD01363.1    JAD03182.1    JAD04415.1    CH379070    EAL30096.1    CH479203    EDW30347.1    GAMC01004364    GAMC01004363    JAC02192.1    KRT08645.1    KRT08646.1    KK853090    KDR11573.1    PNF19733.1    GL732523    EFX90035.1    BC045039    CM004483    AAH45039.1    OCT61194.1    KU851935    AOV81546.1    HACA01005762    HACA01005763    HACA01005764    CDW23124.1    GECU01020347    GECU01007595    JAS87359.1    JAT00112.1    CM004482    OCT63651.1    GDIQ01201912    JAK49813.1    GDIP01109697    JAL94017.1    GDIP01062750    GDIQ01076147    JAM40965.1    JAN18590.1    GDIP01026045    JAM77670.1    GDIP01156891    JAJ66511.1    GDIP01157789    JAJ65613.1    FR905794    CDQ81595.1    GDIQ01036314    JAN58423.1    AYCK01014605    GECL01002550    JAP03574.1    GDIQ01059553    JAN35184.1    AHAT01020106    JT413509    AHH40276.1    AMQN01008383    KB302988    ELU03679.1    BX004991    GDIP01232128    JAI91273.1    AAMC01048727    AAMC01048728    KL217611    KFO97039.1    HADW01005781    HADX01009769    SBP32001.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000037510    UP000007151    UP000053240    + More
UP000000311    UP000279307    UP000036403    UP000002358    UP000076502    UP000053825    UP000242457    UP000005203    UP000078492    UP000008237    UP000078541    UP000215335    UP000078540    UP000005205    UP000007755    UP000192223    UP000075809    UP000078542    UP000007266    UP000053097    UP000235965    UP000094527    UP000268350    UP000007798    UP000192221    UP000001292    UP000000304    UP000000803    UP000019118    UP000030742    UP000008711    UP000001819    UP000008744    UP000027135    UP000000305    UP000186698    UP000087266    UP000265140    UP000193380    UP000028760    UP000261500    UP000261480    UP000018467    UP000242638    UP000002852    UP000018468    UP000221080    UP000245300    UP000014760    UP000000437    UP000008143    UP000054308    UP000261440    UP000264820    UP000192224    UP000261540   

PRIDE

H9JEL4    Q9VZE4   

Pfam

PF00076   RRM_1

Interpro

IPR034203   RBM45_RRM1        + More
IPR035979   RBD_domain_sf       
IPR000504   RRM_dom       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR034208   RBM45_RRM4       
IPR034207   RBM45_RRM3       
IPR034206   RBM45_RRM2       

SUPFAM

SSF54928   SSF54928       

Gene 3D

3.30.70.330    

CDD

cd12366  RRM1_RBM45
cd12369  RRM4_RBM45
cd12368  RRM3_RBM45
cd12367  RRM2_RBM45

ProteinModelPortal

H9JEL4   A0A2A4JB17   A0A2H1W7R2   A0A194PRH3   A0A0L7L239   A0A212F6B7   + More
A0A0N1IB74   A0A2W1BMM2   A0A1E1WP80   A0A212EMG8   A0A0L7L5W8   A0A2A4JV65   A0A2H1VW40   E2AVF6   A0A3L8D8N4   A0A0J7KF68   K7J4Y3   A0A154PFM7   A0A0L7R064   A0A2A3EM65   A0A088AKI4   A0A195EHQ8   E2BRV3   A0A195FBA9   A0A232FCL6   A0A195B9Y8   A0A158NK93   F4W8J2   A0A1W4W9L0   A0A151X744   A0A151I7W0   A0A0T6B3Y4   D6WN04   A0A026VRJ8   A0A1Y1M913   U5EVX4   A0A2J7PTS0   A0A1D2MZ03   A0A1B6D106   A0A1L8DG18   A0A3B0J5C9   B4NLY7   A0A1W4VV05   B4HU42   B4QQJ6   Q9VZE4   A0A0K8UVM9   A0A034WG12   N6UQ96   U4U532   B3NC18   A0A0A1X0Y1   Q29EG5   B4H1Z5   W8C6B7   A0A0R3P944   A0A067QS74   A0A2J7PTS7   E9FQR9   Q7ZXD8   A0A1D8MB84   A0A0K2TAK8   A0A1B6IKB6   A0A1S3MU34   A0A3P8Z8C2   A0A1L8EWD7   A0A0P5JCV8   A0A0P5UYM5   A0A0P6DJA7   A0A1S3P0F0   A0A0P6ASX9   A0A0P5DFQ6   A0A0P5DDV3   A0A060XXB4   A0A0P6H6V6   A0A087XLI1   A0A3B3U5D3   A0A3B3Y1C2   A0A0V0G6D1   W5KJA7   A0A3P9NAT9   A0A0P6EPT0   A0A3B5R8Z1   W5MIU1   W5UE65   W5MIV8   S4RDG7   R7UCE8   B0S522   A0A0P4YCE4   F7EFV3   A0A091HPB5   A0A3B4EBL8   A0A3P8YZ58   A0A3Q3DNB2   A0A1W4ZLG0   A0A3B3R2X1   A0A1A7YP66  

PDB

6QX9     E-value=2.9111e-09,     Score=148

KEGG

101737823    no KO assigned | (RefSeq) RNA-binding protein 45

GO

GO:0003723   GO:0005737   GO:0005634   GO:1990904   GO:0003729   GO:0003676   GO:0000166   GO:0019843   GO:0005057   GO:0007165   GO:0016620   GO:0006418   GO:0016876   GO:0043039  

Length:

445

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.12745

Exp number, first 60 AAs:

0.00413

Total prob of N-in:

0.02100

outside

1  -  445

 

 

Pi

214.780139

Theta

187.255018

Tajima's D

0.56797

CLR

0.032673

CSRT

0.531223438828059

Interpretation

Uncertain