Gene

KWMTBOMO08612  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007962

Annotation

putative_U3_small_nucleolar_ribonucleoprotein_IMP3_[Danaus_plexippus]

Location

Bomo_Chr15(-):961049-962512      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.21 Nuclear   Reliability : 1.613

CDS

ATGGTCAGAAAACTTAAATTTCATGAAGGGAAACTGCTAAAGAAAGTAGACTTTATATCATGGAAGTTGGATAACAATATTAGTGAAGTGAAGGTTATGAAAAAGTTTTGTATACAAAAGCGTGAGGATTACACAAAGTATAACAAATTGTCTCGTGATATCAGAGAGCTCGCAAACAAGATAAAAGACCTCGATCCAAATAATGAATTCAGGACAGAGTCAAGTGCTCAACTTTTGGAAAAACTTTACCAAATTGGATTGATACCGACAAGATGGGATCTTGCCTTGGCCACTAATGTCTCTGCCAGTTCTTTCTGTAGGCGAAGGCTGCCTGTGTTGATGGTTCGAAATAAAATGTCAGAAACTATTAAAGAAGCCACAAAGTTTATTGAACAAGGACATGTAAGAGTGGGACCTGAAGTAGTGAAGGATCCTGCATTCCTTGTCAACAGATCACTGGAGGACTTTGTTACATGGGTTGATGGTTCAGCAATAAGAAAACATGTTCTGGAATATAATGAAATGAGAGATGACTTCGATATGTTATAA

Protein

MVRKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYTKYNKLSRDIRELANKIKDLDPNNEFRTESSAQLLEKLYQIGLIPTRWDLALATNVSASSFCRRRLPVLMVRNKMSETIKEATKFIEQGHVRVGPEVVKDPAFLVNRSLEDFVTWVDGSAIRKHVLEYNEMRDDFDML

Uniprot

H9JEL5   A0A212F6A1   A0A2A4JB25   S4PCX3   A0A3S2L9K4   A0A067QJF1   + More
A0A0L7L1M3   A0A1S3IPM7   A0A2J7QX45   A0A1B6GZW8   A0A0K8TRI9   A0A1B6ICP1   K7IN91   D6X3L4   A0A1Y1LEN9   U5EZ58   A0A1W4WWK7   A0A088ASL5   A0A1B6MSN6   E2AB02   A0A158NZI0   A0A0N0BK49   A0A1Q3F162   A0A210QQB5   E9GRY4   A0A1B6CS20   A0A023EH68   A0A232F0K0   A0A1S4FA14   A0A151J6S5   A0A182YLT9   A0A023F457   I4DNW7   Q17AL1   A0A151WV62   A0A195BMU6   A0A182PER6   A0A0V0G917   A0A224XXX5   A0A336KVL8   A0A2R5LIH1   B0XDY0   A0A0P5SRR7   A0A069DPI2   A0A182Q4C6   A0A1L8DGZ1   A0A0J7KYR6   A0A0P6JK63   A0A182WCB6   A0A0P4WFM2   A0A293LBC0   A0A2S2QW35   A0A2R7WU63   A0A182M4G3   A0A182UPS7   A0A182WTS8   A0A182LL84   Q7Q5L1   A0A182RI80   A0A182TE90   A0A182NIH0   A0A1W0WIT8   A0A182HI24   A0A151I6P7   A0A2A3EDI0   Q6GL45   T1I4Q3   Q6INR4   A0A2R8QAU3   A0A182J6W8   T1IJR2   E9J745   C4WVH2   A0A1E1WWE4   W4YUT4   E0VPC8   A0A1E1XQI1   A0A1D1VHN5   A0A1L8GGY4   A0A1W4Y540   A0A0N7Z9B1   A0A182JYI2   A0A2M4C0Z3   A0A195FDC6   A0A131Z7Q9   L7LZQ7   A0A131X9F5   A0A224YZZ2   A0A1B0GM30   A0A3M7RG82   A0A2D0RA30   A0A3B4EPQ8   A0A3P8PC55   A0A3P9BBE6   A0A226EU00   A0A023G7I8   A7RTU1   A0A3B3CAJ0   W5JQB9   A0A146P7L5  

Pubmed

19121390    22118469    23622113    24845553    26227816    26369729    + More
20075255    18362917    19820115    28004739    20798317    21347285    28812685    21292972    24945155    26483478    28648823    25244985    25474469    22651552    17510324    26334808    20966253    12364791    14747013    17210077    27762356    23594743    21282665    28503490    20566863    29209593    27649274    27129103    26830274    25576852    28049606    28797301    30375419    23127152    25186727    17615350    29451363    20920257    23761445   

EMBL

BABH01003305    AGBW02010064    OWR49270.1    NWSH01002297    PCG68622.1    PCG68624.1    + More
GAIX01003911    JAA88649.1    RSAL01000379    RVE42065.1    KK853274    KDR09096.1    JTDY01003564    KOB69335.1    NEVH01009397    PNF33150.1    GECZ01001804    JAS67965.1    GDAI01000847    JAI16756.1    GECU01023008    JAS84698.1    KQ971375    EEZ97645.1    GEZM01062133    JAV70026.1    GANO01001388    JAB58483.1    GEBQ01001020    JAT38957.1    GL438234    EFN69278.1    ADTU01004624    KQ435710    KOX79914.1    GFDL01013749    JAV21296.1    NEDP02002418    OWF50909.1    GL732561    EFX77759.1    GEDC01020959    JAS16339.1    JXUM01075560    GAPW01004885    KQ562893    JAC08713.1    KXJ74895.1    NNAY01001451    OXU23938.1    KQ979797    KYN19076.1    GBBI01002427    JAC16285.1    AK403176    BAM19607.1    CH477333    EAT43280.1    KQ982717    KYQ51726.1    KQ976433    KYM87300.1    GECL01002253    JAP03871.1    GFTR01003014    JAW13412.1    UFQS01001036    UFQT01001036    SSX08662.1    SSX28577.1    GGLE01005001    MBY09127.1    DS232790    EDS45687.1    GDIP01136261    LRGB01003024    JAL67453.1    KZS04956.1    GBGD01003149    JAC85740.1    AXCN02000889    GFDF01008454    JAV05630.1    LBMM01001837    KMQ95667.1    GDIQ01016633    JAN78104.1    GDRN01029903    JAI67582.1    GFWV01005937    MAA30667.1    GGMS01012768    MBY81971.1    KK855555    PTY23109.1    AXCM01008074    AAAB01008960    EAA11512.2    MTYJ01000094    OQV15089.1    APCN01005864    KQ978473    KYM93693.1    KZ288271    PBC29768.1    BC074666    AAH74666.1    ACPB03006983    BC072209    CM004472    AAH72209.1    OCT85417.1    CR956623    JH430339    GL768421    EFZ11384.1    ABLF02040973    AK341514    BAH71892.1    GFAC01007894    JAT91294.1    AAGJ04019776    AAGJ04019777    DS235363    EEB15234.1    GFAA01001876    JAU01559.1    BDGG01000004    GAU98413.1    CM004473    OCT83056.1    GDKW01001043    JAI55552.1    GGFJ01009824    MBW58965.1    KQ981685    KYN38044.1    GEDV01002071    JAP86486.1    GACK01008695    JAA56339.1    GEFH01005018    JAP63563.1    GFPF01009075    MAA20221.1    AJVK01023898    REGN01003427    RNA22576.1    LNIX01000002    OXA61083.1    GBBM01005624    JAC29794.1    DS469538    EDO45146.1    ADMH02000830    ETN64934.1    GCES01146560    JAQ39762.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000283053    UP000027135    UP000037510    + More
UP000085678    UP000235965    UP000002358    UP000007266    UP000192223    UP000005203    UP000000311    UP000005205    UP000053105    UP000242188    UP000000305    UP000069940    UP000249989    UP000215335    UP000078492    UP000076408    UP000008820    UP000075809    UP000078540    UP000075885    UP000002320    UP000076858    UP000075886    UP000036403    UP000075920    UP000075883    UP000075903    UP000076407    UP000075882    UP000007062    UP000075900    UP000075902    UP000075884    UP000075840    UP000078542    UP000242457    UP000015103    UP000186698    UP000000437    UP000075880    UP000007819    UP000007110    UP000009046    UP000186922    UP000192224    UP000075881    UP000078541    UP000092462    UP000276133    UP000221080    UP000261460    UP000265100    UP000265160    UP000198287    UP000001593    UP000261560    UP000000673    UP000265000   

PRIDE

H9JEL5   

Pfam

PF00163   Ribosomal_S4        + More
PF01479   S4

Interpro

IPR036986   S4_RNA-bd_sf        + More
IPR002942   S4_RNA-bd       
IPR001912   Ribosomal_S4/S9_N       
IPR022801   Ribosomal_S4/S9       

Gene 3D

3.10.290.10    

CDD

cd00165  S4

ProteinModelPortal

H9JEL5   A0A212F6A1   A0A2A4JB25   S4PCX3   A0A3S2L9K4   A0A067QJF1   + More
A0A0L7L1M3   A0A1S3IPM7   A0A2J7QX45   A0A1B6GZW8   A0A0K8TRI9   A0A1B6ICP1   K7IN91   D6X3L4   A0A1Y1LEN9   U5EZ58   A0A1W4WWK7   A0A088ASL5   A0A1B6MSN6   E2AB02   A0A158NZI0   A0A0N0BK49   A0A1Q3F162   A0A210QQB5   E9GRY4   A0A1B6CS20   A0A023EH68   A0A232F0K0   A0A1S4FA14   A0A151J6S5   A0A182YLT9   A0A023F457   I4DNW7   Q17AL1   A0A151WV62   A0A195BMU6   A0A182PER6   A0A0V0G917   A0A224XXX5   A0A336KVL8   A0A2R5LIH1   B0XDY0   A0A0P5SRR7   A0A069DPI2   A0A182Q4C6   A0A1L8DGZ1   A0A0J7KYR6   A0A0P6JK63   A0A182WCB6   A0A0P4WFM2   A0A293LBC0   A0A2S2QW35   A0A2R7WU63   A0A182M4G3   A0A182UPS7   A0A182WTS8   A0A182LL84   Q7Q5L1   A0A182RI80   A0A182TE90   A0A182NIH0   A0A1W0WIT8   A0A182HI24   A0A151I6P7   A0A2A3EDI0   Q6GL45   T1I4Q3   Q6INR4   A0A2R8QAU3   A0A182J6W8   T1IJR2   E9J745   C4WVH2   A0A1E1WWE4   W4YUT4   E0VPC8   A0A1E1XQI1   A0A1D1VHN5   A0A1L8GGY4   A0A1W4Y540   A0A0N7Z9B1   A0A182JYI2   A0A2M4C0Z3   A0A195FDC6   A0A131Z7Q9   L7LZQ7   A0A131X9F5   A0A224YZZ2   A0A1B0GM30   A0A3M7RG82   A0A2D0RA30   A0A3B4EPQ8   A0A3P8PC55   A0A3P9BBE6   A0A226EU00   A0A023G7I8   A7RTU1   A0A3B3CAJ0   W5JQB9   A0A146P7L5  

PDB

5WYK     E-value=1.58037e-49,     Score=490

KEGG

101738050    K14560 U3 small nucleolar ribonucleoprotein protein IMP3 | (RefSeq) U3 small nucleolar ribonucleopro

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0019843   GO:0003723   GO:0006364   GO:0032040   GO:0030515   GO:0034457   GO:0016021   GO:0005622   GO:0005057   GO:0007165   GO:0016620   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR11831  

Length:

182

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00449

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12003

outside

1  -  182

 

 

Pi

389.998646

Theta

234.298757

Tajima's D

2.092942

CLR

0.116194

CSRT

0.898755062246888

Interpretation

Uncertain