Silkworm Genome Informatics Database

Gene

KWMTBOMO08608 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007618

Annotation

PREDICTED:_bromodomain-containing_protein_DDB_G0280777-like_[Amyelois_transitella]

Location

Bomo_Chr15(+):930033-934348 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.823

CDS

ATGTCGTCCAAATCTTTGAGAGTAATTCCTAGCACAGTGGGCTATGGAAAATATACTAGGACCTTTGACTTCACGGAGTTTTACAAAAGCACATCAGAACTTCCCAAAAGATGGGAAAATAATACTGCAGGTAGTTCTGCAGATACACAGTTAAATAATGTGGATATTAGTGAAGAAACTAAACTTAAAAAAAAGAAGAAGAAATCGAAAAGAGATTCTTCAAATGTCTCTGAAGCAATAGTAAAAAGCTCTAGCATAAATTCTAATGTGAAATTGAAAGGGATCTTAAAAGTATCTCCAGCTCCTGAAGATTGTACAAAAGACACAGCCAGCACAAATCAAAGTAATCGAAATTCTGACAATGATATAAAAGATGGTACAAAAGCAGCAGTAACAAAGCCAAATAAAAGAAGTAAGTCTTGTAGCTTCATGCTTGAAGATACTCAAGAAATAGCTGTTAAAAAACCTAAATCAGAAGGATCATTTGTTGAAAATAGAAAAATTAAAGACAGCCGAAAAGAACATCAGAAATCAATTGATGGTCAGAATGGTAATCAATATAAAACTAAAATATATAGGAGCCAGAAACATTCCTCTAATAATCGATCACAAGATTCTGAAGATACAAAAGCTCTTGAAAAATTAACAAAACGTAAGAAACTAAAAAGACTAAGTCAAGATACTGAACAAACAGCAGAAGAAAATACAGAACAAGCAACACGGAAGAAACCAAAAAACTCAAAAAAGAAGCGGCATCAAGAGATGGAACTTGATGAAAATGAAACTAAAGCAGAAGTAAAAACTGATATCTTAACAGAAAATTTAGAAAATCTTAACATTGGTGATAATGCTCACACACTAACAAACCTACTTGACGAAATGGCAGTAGTGGATAAATCAAAAACAGAAAAGAAACAAAAAAGAAAAGATAAAAAGAAAATTGGCACAGAAAGAGATAAAGACTTAGAAAAAGAAGAGAATGAGAAAGTTAAATGGAGTAAAAGGAAATGGAATAAAGATAAAAAAGGAGGTATTGAGAATGAGAATTTAGACACAACTGTTGTCATAGAAAATTTACCTATTTCTATAATGTTAACATACAAGAAGTTGTTGACAGATCATTTTGTGAAATATGGACTCATAAAGAATATTGGAATAGCCGAAGTATATCCTACTGAGGAATCAAAACCAGTGTTTACAACTACTATTAAGTTTTATAGTGATGGAGCTGCCACAGAGGCATTAAATGAGGACAATGCTACGTTCGAAGGCAGCAGTATACGGGTGAAGCGACCCTTGCCTGCCACCGAAACCACCATAGTACTCCGGTCATATTCAGAATTAAATGAACAAACTGTGTGTTCTCTCTTCACTGGAATCGGCAAGATAAGGAGTATAAGATTAATTATTAAAGGAAGGAAATCTTTATCGACTGCATTCATCGAGTTCGCCGGTCCCGAGTCGGTGGAGAAGGCGCTACAGAAGGCTGCTCATATTAAAATAGGAAAGAAGAAAGTCCACGTCGCGAGATATCAACCCCGTGAGAAGAAACCTAAATCAGATGAAGGGCAAAAGGAAAGCGACTCCGAGTGA

Protein

MSSKSLRVIPSTVGYGKYTRTFDFTEFYKSTSELPKRWENNTAGSSADTQLNNVDISEETKLKKKKKKSKRDSSNVSEAIVKSSSINSNVKLKGILKVSPAPEDCTKDTASTNQSNRNSDNDIKDGTKAAVTKPNKRSKSCSFMLEDTQEIAVKKPKSEGSFVENRKIKDSRKEHQKSIDGQNGNQYKTKIYRSQKHSSNNRSQDSEDTKALEKLTKRKKLKRLSQDTEQTAEENTEQATRKKPKNSKKKRHQEMELDENETKAEVKTDILTENLENLNIGDNAHTLTNLLDEMAVVDKSKTEKKQKRKDKKKIGTERDKDLEKEENEKVKWSKRKWNKDKKGGIENENLDTTVVIENLPISIMLTYKKLLTDHFVKYGLIKNIGIAEVYPTEESKPVFTTTIKFYSDGAATEALNEDNATFEGSSIRVKRPLPATETTIVLRSYSELNEQTVCSLFTGIGKIRSIRLIIKGRKSLSTAFIEFAGPESVEKALQKAAHIKIGKKKVHVARYQPREKKPKSDEGQKESDSE

Uniprot

H9JDM1

Pubmed

19121390

EMBL

BABH01003306

Proteomes

UP000005204

PRIDE

H9JDM1

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR000504   RRM_dom
IPR035979   RBD_domain_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9JDM1

PDB

4TU9 E-value=0.000265696, Score=106

KEGG

101738259 no KO assigned | (RefSeq) uncharacterized LOC101738259

GO

GO:0003723 GO:0003676 GO:0000166 GO:0016311 GO:0016791 GO:0004725 GO:0016620 GO:0006418 GO:0016876 GO:0043039

Length:

530

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00111

Exp number, first 60 AAs:

0.00038

Total prob of N-in:

0.00103

outside

1 - 530

Pi

26.66451

Theta

28.384541

Tajima's D

-0.294201

CLR

2.486568

CSRT

0.294935253237338

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics