Silkworm Genome Informatics Database

Gene

KWMTBOMO08607 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007965

Annotation

PREDICTED:_uncharacterized_protein_LOC101738399_isoform_X3_[Bombyx_mori]

Location

Bomo_Chr15(-):919704-927802 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.834

CDS

ATGGTAGCCCAAAAGAAAGGTCGCGGAGCTAAAACTCAGGCAGCTAAACCCAAGCCCGCTGAAGATGTCGTTGAAGAAGCAGAAGTTCCAGAACAAGCCGAAGAGAACAATGGCGTATCGGATCAAGTTGAGCATGGAGACGACGGAATCGCTGCTGAAGGCGCTGAGAACGCTGATGAGTCTACGGAGGGTGATCAGAATCAAGAAAATCCTGATGGCGAAACAAAAACTGAAGAGAAGCAGGAGGAAAAAGTAGAAACTGGTAAATTGCTGGTCGAGAACCTCCCTTCGAGCTACCTCTTCGACTACCAGGAAAAGCTCAAGGAGTTGTTCTCAAAACACGGGGAAATCAATACAGTCAAACGTGGTCCAATCATTGTAACTGAACTGACCACAACTCCGACATTATCGGCTATAGTCGAATTCAAAAACAAAGACAGTCTGGAAAAGGCGCTGTCGGAGCACGGCGCCGTGGTGGAGGGGCACGCGCTCTCCGTGGCGGTGGAGTCGCGCGCCGAGACCGCCGTGCTGGTGGGGGTGCCCTACGAGGCCAGCACGGACTACGTGCGCCTGCTGTTCGCGCACTGCGGCGACGTGGCGCACATCCACGAGTTCAGCAAGACCAAGTACAAAATCTTGCGGGTGACATTCCACGACAAGGAGTCCGTCGAGAAGGCGCTGAAGCTGGACCGCGAGCTCCGCATCAACGGGTTCCTCGTCACCGTCTCCAAATATCGCGACGAAGACGAACAGAAAGCTCATAATGCAAGTATTAACAAGAACAAGCGGCAGCACCCGCAGCAGCAGAACCGCAACGCTGCGAGCGCCGCCAACAACACCAGCAGCCCCGCCGGCCGCGCCAACAACTTCCGGTCCCGCGGGAGCTCCTTCAACGCGCAGGGGAACTTTAGAGGCACGCGCGGGCGCGGCGGCGGCGGCGGCTTCGGGCGCGGCGGCGGCTTCCCTCGCGGCGGGTTCGCCCCCGTGACGTCATACATGCCGCCGCAGGGCTTCCTCGCCAGACCCGGCGGCTTCATCAACGACGGACAACGGCCGAACAAGCGGCTGAGGAAGTACTAA

Protein

MVAQKKGRGAKTQAAKPKPAEDVVEEAEVPEQAEENNGVSDQVEHGDDGIAAEGAENADESTEGDQNQENPDGETKTEEKQEEKVETGKLLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEGHALSVAVESRAETAVLVGVPYEASTDYVRLLFAHCGDVAHIHEFSKTKYKILRVTFHDKESVEKALKLDRELRINGFLVTVSKYRDEDEQKAHNASINKNKRQHPQQQNRNAASAANNTSSPAGRANNFRSRGSSFNAQGNFRGTRGRGGGGGFGRGGGFPRGGFAPVTSYMPPQGFLARPGGFINDGQRPNKRLRKY

Uniprot

A0A2H1V2D8 A0A2A4JA27 A0A3S2NY57 A0A212F6B5 A0A2A4J952 A0A194PRG7 + More
A0A0N1IQF6

Pubmed

22118469 26354079

EMBL

ODYU01000345 SOQ34936.1 NWSH01002297 PCG68606.1 RSAL01000026 RVE51981.1 + More
AGBW02010064 OWR49273.1 PCG68605.1 KQ459596 KPI95344.1 KQ459717 KPJ20288.1

Proteomes

UP000218220 UP000283053 UP000007151 UP000053268 UP000053240

Pfam

PF00076 RRM_1

Interpro

IPR035979   RBD_domain_sf        + More
IPR000504   RRM_dom
IPR012677   Nucleotide-bd_a/b_plait_sf

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

A0A2H1V2D8 A0A2A4JA27 A0A3S2NY57 A0A212F6B5 A0A2A4J952 A0A194PRG7 + More
A0A0N1IQF6

KEGG

101738399 no KO assigned | (RefSeq) nucleolin-like

GO

GO:0003723 GO:0016021 GO:0003676 GO:0000166 GO:0016311 GO:0016791 GO:0004725 GO:0016620 GO:0006418 GO:0016876 GO:0043039

Length:

359

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0333

Exp number, first 60 AAs:

0

Total prob of N-in:

0.10923

outside

1 - 359

Pi

207.843971

Theta

177.819254

Tajima's D

-1.210344

CLR

16.798279

CSRT

0.0998950052497375

Interpretation

Uncertain

Source	Sequence	Identity	Evalue
28556443	AETAVLVGVPYEASTDYVR	100.00	8e-07
28556443	PGGFINDGQRPNK	100.00	2e-06
28556443	RPALAISAVDDFLR	100.00	2e-06
28556443	LLVENLPSSYLFDYQEK	100.00	9e-06
28556443	INGFLVTVSK	100.00	9e-06
28556443	ALSEHGAVVEGHALSVAVESR	100.00	9e-06
26280517	YQVHDISAHFIR	100.00	1e-04
26280517	PGAIAPISVVIPAHNTGIGPEK	100.00	8e-04
28556443	KDSLEK	100.00	0.003
28556443	ALSEHGAVVEGH	100.00	0.008

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics