SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08601
Annotation
PREDICTED:_uncharacterized_protein_LOC106709922_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 3.406
 

Sequence

CDS
ATGAAACAACAGACTATCGCTATAACAGAAGCTGTAACTAAAAATGTAGTGCAACAAATTGATGAACGATTTAAAATGATAGACGACGAAAACAAACAACTTAAAAATTCAGTCAAAGAACTTAAGGAGAAAATTAAAGGTCTGGAAATGGCTAAAAAGAAAACTAACATACTACTCTTTGGAATAAAGGAAGACAAACAAGAAGGGTTAAGTTTGGTAAAATACATATCTGAAAAACTTAATTGTCATCTAGGATTAAGCATACAAGAGCACGAAATTATGAATATCTATAGAATTGGAAAGATAAAAACTACGCCTCGACCTATTTTAATATCCCTTGTATCGTACTGGAGAAAAATGGAAATAATGAGGTCCAAAAATAAACTACCCCAGGGTATTTATGTGAAGGAAGATTATACTAAAGAAATATTAGAAGCACGCAAAACATTACAACCAAAACTTGAAGAGGAACGAAGGAAGGGTAACATAGCATACTTAAAATTAGATAAACTAATAATCAAGAGCCAAACGGATGCTAATCGAGAAAAAAGGAAAAGAGACCCATCTTCTTCGCCCAATGTCAGCACACCACGAAAAGAAAATGAATTGTACGTAGCTCCGAAGAAAGTCAACACAACTAATGCGTACGAATACATGGCACGCGTAAAATCAAACTCATTAAGAGAGAAAACCAATGTATAG
Protein
MKQQTIAITEAVTKNVVQQIDERFKMIDDENKQLKNSVKELKEKIKGLEMAKKKTNILLFGIKEDKQEGLSLVKYISEKLNCHLGLSIQEHEIMNIYRIGKIKTTPRPILISLVSYWRKMEIMRSKNKLPQGIYVKEDYTKEILEARKTLQPKLEEERRKGNIAYLKLDKLIIKSQTDANREKRKRDPSSSPNVSTPRKENELYVAPKKVNTTNAYEYMARVKSNSLREKTNV

Summary

EMBL
NWSH01002532    PCG68054.1    ODYU01000586    SOQ35631.1    NWSH01000260    PCG77926.1    + More
ODYU01000585    SOQ35630.1    NWSH01003397    PCG66369.1    NWSH01001771    PCG70189.1    NWSH01001196    PCG72157.1    BABH01021795    NWSH01005231    PCG64345.1    FJ265564    ADI61832.1    JTDY01002536    KOB71226.1    NWSH01004020    PCG65566.1    ODYU01013311    SOQ60019.1    JTDY01003098    KOB70157.1    NWSH01003169    PCG66835.1    JTDY01001071    KOB74965.1    JTDY01007450    KOB65190.1    JTDY01000539    KOB76734.1    JTDY01000743    KOB76037.1    GDQN01002055    GDQN01002009    JAT88999.1    JAT89045.1    KZ150150    PZC72845.1    JTDY01000511    KOB76839.1    JTDY01001738    KOB73038.1    JTDY01000484    KOB76970.1    BABH01024878    ODYU01001637    SOQ38140.1    JTDY01001949    KOB72466.1    JTDY01008572    KOB64508.1    NWSH01000023    PCG80652.1    KQ459995    KPJ18566.1    NWSH01002039    PCG69337.1    JTDY01000076    KOB79001.1    JTDY01000640    KOB76373.1    JTDY01000843    KOB75692.1    ODYU01008249    SOQ51673.1    FJ265563    ADI61831.1    JTDY01016948    KOB51874.1    JTDY01014369    KOB52037.1    JTDY01001350    KOB74106.1    JTDY01002701    KOB70892.1    JTDY01010650    KOB58126.1    JTDY01000362    KOB77536.1    JTDY01009336    KOB63636.1    JTDY01009161    KOB64038.1    JTDY01007191    KOB65392.1    JTDY01009971    KOB62006.1    GBGD01002698    JAC86191.1    JTDY01006513    KOB65949.1    JTDY01001987    KOB72394.1    JTDY01000408    KOB77334.1    JTDY01002685    KOB70933.1    ACPB03011704    ACPB03011705    ACPB03011706    ACPB03011707    ACPB03011708    ACPB03011709    ACPB03011710    ACPB03011711    ACPB03011712    ACPB03011713    JTDY01010526    KOB58179.1    FJ265562    ADI61830.1    JTDY01000977    KOB75230.1    JTDY01000895    KOB75518.1    JTDY01008567    KOB64512.1    JTDY01000437    KOB77173.1    JTDY01000780    JTDY01000104    JTDY01000008    KOB75906.1    KOB78842.1    KOB79479.1    QCYY01000248    ROT85566.1    ODYU01010663    SOQ55918.1    GEZM01094174    GEZM01094173    JAV55842.1    JTDY01009375    KOB63594.1    JTDY01003742    KOB69063.1    GEGO01000144    JAR95260.1   
Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00501   AMP-binding
Interpro
IPR004244   Transposase_22        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR000477   RT_dom       
IPR027124   Swc5/CFDP2       
IPR020845   AMP-binding_CS       
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
SUPFAM
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
233
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00538
Exp number, first 60 AAs:
0
Total prob of N-in:
0.21192
outside
1  -  233
 
 

Population Genetic Test Statistics

Pi
265.877776
Theta
150.637876
Tajima's D
2.362277
CLR
0.186022
CSRT
0.930203489825509
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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