Gene

KWMTBOMO08596  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007971

Annotation

PREDICTED:_vesicle-trafficking_protein_SEC22b-B_[Papilio_machaon]

Location

Bomo_Chr15(-):537519-540947      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.501

CDS

ATGGTGTTAATGACTATGATTGCAAGAGTCGCCGACGGGCTGCCTTTGGCTGCCACTATGCAAGAGGATGAGCAGAGCGGGTGCAATATACTCGAGTACCAGAATCAGGCTAAAATGCTGTTTAGGAAATTAAGCCCTCAGTCCCCGATGAGATGTTCCATTGAAACCGGCCCGTATCTCTTCCATTATTTGATTGAAAATCACATATGTTATTTGGTCCTGTGTGAAAGAAACTACAGTAAACGACTAGCATTCAATTATCTCGAGGAAATAGCACAGGAATTCTTCCAACAGTACGGACACAGGTTGAACACCGTGACTCGTCCGTACACGTTCATAGAGTTCGACACGTGCATGCAGCGCACGCGGAAGCAGTACGCGGAGGGCGGCGCGCGCGCCCGCCGGGCCGGCGCCGCCTCGCACCTGGCGCCGCAGCTGGGCGACGTGCAGCGCATCATGATGCAGAACATCGACGACGTGCTGCAGAGGGGAGCTATACTGTCCGAACTGGACACGAAGACGCAAAACCTATCGATGATGTCGCAGAAGTACCGGAAGGACGCCACGTATCTCAACACGAAGTCGATGCTGGTGAAGGTGACCGCCGGAGCCGTTATCGTGCTCGTGATTGTGCTTTACTTCTGGGTTCTCTAG

Protein

MVLMTMIARVADGLPLAATMQEDEQSGCNILEYQNQAKMLFRKLSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEGGARARRAGAASHLAPQLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIVLYFWVL

Similarity

Belongs to the synaptobrevin family.

Uniprot

H9JEM4   A0A0N1PK06   A0A194PPF7   A0A2H1V148   A0A212ELR2   A0A437BDP4   + More
A0A1Y1LH53   A0A0T6B7I3   D2A3C4   A0A2J7QFY1   A0A1B6GMV1   A0A1B6KFA7   A0A2P8YQ63   A0A069DQS2   E2AEM8   A0A0A9YRB3   A0A1B6I482   N6TZX5   A0A067R4K1   A0A026X1L5   A0A0J7KRG6   A0A2A3EH10   A0A088AK13   A0A0P4W2M9   T1HF47   A0A151WFZ1   E2BTD1   F4X2I9   A0A195BU01   A0A158NV85   A0A0N0U722   A0A154PI60   A0A195FX03   A0A310SUH2   R4WIM4   A0A151I8U3   A0A0L0CC63   D3TN16   A0A1A9XSZ3   A0A1A9ULF6   A0A1B0BVZ9   A0A1B0AC03   A0A034WKH5   A0A0K8VI43   A0A1B0D0J1   Q1HQY2   A0A182GIM5   T1E2D1   A0A1I8N1D9   A0A1I8PQE7   A0A1B0CTM2   B0XEH5   A0A1L8EE98   A0A084W181   U5EWB5   A0A1Q3FCI6   A0A182MQX0   A0A182RJU5   R4FN59   A0A182Q5Y0   A0A182WAY5   A0A2M4C0H0   A0A1W4VS97   B4R2J5   B4I967   B3MYB7   A0A2M4BZF1   A0A2M4AH65   O77434   W5JNC6   Q7QKR2   A0A2M3Z6S0   A0A232ELU6   B4PX42   B3P9A7   B4JJ22   A0A182PUN1   B4L3Q0   M9PGI6   A0A0M4EQP8   A0A1J1HXK2   A0A1L8DUQ2   T1DSK0   B4ND73   E0VWZ7   A0A3B0KR73   A0A182NQB4   A0A0K8TP47   Q29FP3   B4GTV8   A0A3R7SI35   A0A444TED6   A0A182FLP6   A0A151J192   A0A3B0KYG0   A0A2H8TU28   A0A2S2NXT2   C4WU67   A0A2I9LPX4   A0A0P4W9B2  

Pubmed

19121390    26354079    22118469    28004739    18362917    19820115    + More
29403074    26334808    20798317    25401762    23537049    24845553    24508170    30249741    27129103    21719571    21347285    23691247    26108605    20353571    25348373    17204158    17510324    26483478    24330624    25315136    24438588    17994087    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20920257    23761445    9087549    12364791    14747013    17210077    28648823    17550304    18057021    20566863    26369729    15632085    29248469   

EMBL

BABH01003324    KQ459717    KPJ20301.1    KQ459596    KPI95326.1    ODYU01000192    + More
SOQ34568.1    AGBW02014002    OWR42409.1    RSAL01000083    RVE48452.1    GEZM01055739    JAV72953.1    LJIG01009318    KRT83320.1    KQ971338    EFA02290.1    NEVH01014842    PNF27443.1    GECZ01005993    JAS63776.1    GEBQ01029837    JAT10140.1    PYGN01000438    PSN46389.1    GBGD01002902    JAC85987.1    GL438870    EFN68103.1    GBHO01009991    JAG33613.1    GECU01025969    JAS81737.1    APGK01047873    KB741092    KB632050    ENN73906.1    ERL88298.1    KK852705    KDR18017.1    KK107039    QOIP01000006    EZA61906.1    RLU21247.1    LBMM01003973    KMQ92938.1    KZ288256    PBC30572.1    GDKW01000829    JAI55766.1    ACPB03007281    KQ983203    KYQ46718.1    GL450389    EFN81052.1    GL888584    EGI59314.1    KQ976417    KYM89906.1    ADTU01027002    KQ435715    KOX79124.1    KQ434923    KZC11529.1    KQ981193    KYN45180.1    KQ759867    OAD62469.1    AK417290    BAN20505.1    KQ978330    KYM95084.1    JRES01000619    KNC29840.1    EZ422818    ADD19094.1    JXJN01021554    GAKP01004317    JAC54635.1    GDHF01013753    JAI38561.1    AJVK01009949    DQ440312    CH477938    ABF18345.1    EAT34924.1    JXUM01066441    KQ562398    KXJ76001.1    GALA01000834    JAA94018.1    AJWK01027780    DS232831    EDS25972.1    GFDG01001835    JAV16964.1    ATLV01019244    KE525266    KFB43975.1    GANO01001497    JAB58374.1    GFDL01009751    JAV25294.1    AXCM01017848    GAHY01000688    JAA76822.1    AXCN02001891    GGFJ01009347    MBW58488.1    CM000366    EDX16795.1    CH480825    EDW43748.1    CH902632    EDV32611.1    GGFJ01009243    MBW58384.1    GGFK01006814    MBW40135.1    AE014298    AY069680    AL031583    AAF45554.1    AAL39825.1    CAA20899.2    ADMH02000608    ETN65641.1    AAAB01008568    EAA03438.2    GGFM01003443    MBW24194.1    NNAY01003494    OXU19330.1    CM000162    EDX00828.1    CH954183    EDV45403.1    CH916370    EDV99574.1    CH933810    EDW07178.1    KRF93957.1    KRF93958.1    AGB94949.1    CP012528    ALC48290.1    CVRI01000023    CRK92076.1    GFDF01003926    JAV10158.1    GAMD01000160    JAB01431.1    CH964239    EDW82782.1    DS235824    EEB17903.1    OUUW01000018    SPP89139.1    GDAI01001484    JAI16119.1    CH379065    EAL31536.1    CH479190    EDW25978.1    QCYY01003825    ROT62111.1    SAUD01003267    RXG68367.1    KQ980575    KYN15498.1    SPP89138.1    GFXV01005949    MBW17754.1    GGMR01009366    MBY21985.1    ABLF02039332    AK340929    BAH71437.1    GFWZ01000445    MBW20435.1    GDRN01078342    JAI62595.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000283053    UP000007266    + More
UP000235965    UP000245037    UP000000311    UP000019118    UP000030742    UP000027135    UP000053097    UP000279307    UP000036403    UP000242457    UP000005203    UP000015103    UP000075809    UP000008237    UP000007755    UP000078540    UP000005205    UP000053105    UP000076502    UP000078541    UP000078542    UP000037069    UP000092443    UP000078200    UP000092460    UP000092445    UP000092462    UP000008820    UP000069940    UP000249989    UP000095301    UP000095300    UP000092461    UP000002320    UP000030765    UP000075883    UP000075900    UP000075886    UP000075920    UP000192221    UP000000304    UP000001292    UP000007801    UP000000803    UP000000673    UP000007062    UP000215335    UP000002282    UP000008711    UP000001070    UP000075885    UP000009192    UP000092553    UP000183832    UP000007798    UP000009046    UP000268350    UP000075884    UP000001819    UP000008744    UP000283509    UP000288706    UP000069272    UP000078492    UP000007819   

PRIDE

H9JEM4    O77434    M9PGI6   

Pfam

PF13774   Longin        + More
PF00957   Synaptobrevin

Interpro

IPR010908   Longin_dom        + More
IPR001388   Synaptobrevin       
IPR011012   Longin-like_dom_sf       
IPR036565   Mur-like_cat_sf       
IPR018109   Folylpolyglutamate_synth_CS       
IPR036615   Mur_ligase_C_dom_sf       
IPR023600   Folylpolyglutamate_synth_euk       
IPR001645   Folylpolyglutamate_synth       

SUPFAM

SSF64356   SSF64356        + More
SSF53244   SSF53244       
SSF53623   SSF53623       

Gene 3D

3.40.1190.10     3.90.190.20    

ProteinModelPortal

H9JEM4   A0A0N1PK06   A0A194PPF7   A0A2H1V148   A0A212ELR2   A0A437BDP4   + More
A0A1Y1LH53   A0A0T6B7I3   D2A3C4   A0A2J7QFY1   A0A1B6GMV1   A0A1B6KFA7   A0A2P8YQ63   A0A069DQS2   E2AEM8   A0A0A9YRB3   A0A1B6I482   N6TZX5   A0A067R4K1   A0A026X1L5   A0A0J7KRG6   A0A2A3EH10   A0A088AK13   A0A0P4W2M9   T1HF47   A0A151WFZ1   E2BTD1   F4X2I9   A0A195BU01   A0A158NV85   A0A0N0U722   A0A154PI60   A0A195FX03   A0A310SUH2   R4WIM4   A0A151I8U3   A0A0L0CC63   D3TN16   A0A1A9XSZ3   A0A1A9ULF6   A0A1B0BVZ9   A0A1B0AC03   A0A034WKH5   A0A0K8VI43   A0A1B0D0J1   Q1HQY2   A0A182GIM5   T1E2D1   A0A1I8N1D9   A0A1I8PQE7   A0A1B0CTM2   B0XEH5   A0A1L8EE98   A0A084W181   U5EWB5   A0A1Q3FCI6   A0A182MQX0   A0A182RJU5   R4FN59   A0A182Q5Y0   A0A182WAY5   A0A2M4C0H0   A0A1W4VS97   B4R2J5   B4I967   B3MYB7   A0A2M4BZF1   A0A2M4AH65   O77434   W5JNC6   Q7QKR2   A0A2M3Z6S0   A0A232ELU6   B4PX42   B3P9A7   B4JJ22   A0A182PUN1   B4L3Q0   M9PGI6   A0A0M4EQP8   A0A1J1HXK2   A0A1L8DUQ2   T1DSK0   B4ND73   E0VWZ7   A0A3B0KR73   A0A182NQB4   A0A0K8TP47   Q29FP3   B4GTV8   A0A3R7SI35   A0A444TED6   A0A182FLP6   A0A151J192   A0A3B0KYG0   A0A2H8TU28   A0A2S2NXT2   C4WU67   A0A2I9LPX4   A0A0P4W9B2  

PDB

2NUT     E-value=2.84503e-58,     Score=567

KEGG

101739317    K08517 vesicle transport protein SEC22 | (RefSeq) vesicle-trafficking protein SEC22b-B

PATHWAY

04130    SNARE interactions in vesicular transport - Bombyx mori (domestic silkworm)
04145    Phagosome - Bombyx mori (domestic silkworm)

GO

GO:0016192   GO:0016021   GO:0031201   GO:0005783   GO:0005793   GO:0006890   GO:0006888   GO:0005484   GO:0000139   GO:0005789   GO:0012507   GO:0048280   GO:0061355   GO:0006906   GO:0030133   GO:0005524   GO:0004326   GO:0006810   GO:0009451   GO:0009982   GO:0016620   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR11136:SF5   PTHR11136  

Length:

217

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

21.28095

Exp number, first 60 AAs:

0.05681

Total prob of N-in:

0.92916

inside

1  -  194

TMhelix

195  -  216

outside

217  -  217

 

 

Pi

152.379448

Theta

147.492728

Tajima's D

0.037967

CLR

0.048505

CSRT

0.378081095945203

Interpretation

Uncertain