Gene

KWMTBOMO08593

Pre Gene Modal

BGIBMGA007613

Annotation

Box_C/D_snoRNA_protein_1_[Operophtera_brumata]

Location

Bomo_Chr15(+):527628-529676      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.816

CDS

ATGTCTGCAGACTCAGACTGTGATGAACTGAGCCAAGATGGGCTTTCAAGACTTGGTGACTGCGAAGTTTGTGCGGCTAATAAAGCACTATACACATGTCCTAAATGCGAAGTTAAGACATGTTGCTTAAACTGCGTGAGAATCCACAAAAAAGAGTTGGAATGTGATGGTATAAGAGATCGGACAAAGTTTATAAGAATGAAAGATTTTACCGATACTGATCTCCTGAGTGACTACCGGCTGTTAGAAGAATGCGCGAGGTTTGTTTGGGGAGTCAAGAGAGACGATAAGAAGAGGTTCACAAGAATCGATAAGGATTTACCAATTCACCTATTCAAATTAAAAATGGCTGCACGCCAACGGGGTATTGTGCTTCAGTTTTTAGCACAAAATTTTACAAGACATAAAAATAACACTACAAGATACAATTATAAAAGTAACCTAATAAATTGGAGAGTCGAATGGATATTTCCTAATGTCGACAAAGAACCTATAAAATATGTTGATGAAAAGTGCCCTGAACAGAAAAAGCTATCTCATCTGTTGGATAAATATATTAACTGTGATGTGCCTTTTGAAGGATCAAAATCACTATCATTTTACAAGGCAGCTGGAATTAGTGGTCTTAAAATTTTACTTAAAGCCGAAAAAGTTAAAGGATCAGCCAAGAAATTCTTTGAACTAGATCCAAGTGAATCTTTAGCTGAGAATCTGTCTGGGAAATGTATTGTTGAATTTCCCATAATTTTCATTGTTTTAAAAGATCATGCATATAATTTTGAGATCATTACACCAGAAGACGAATTTGAAGAGATAGAAGCTAATAAACTTGTTAAAGAAATAAAACAAGATAATCATTCAGTTAATGGAATTACTAATGAAGAAAAATATATCAAAGAAAATCACAGAAAAAGACCAAGAGAATTATTAACAGAGAAAATTGCAAAAGAAAAAAGGATGGCATTAGAGAAGGAGATAAAAGAAGAACGAAAGAAGAAACCAAAAAATCTCTTGTTTACTACTGGATACTCATCTGAAGAAAGTCTTGAGGATAGTGATAATGAAAGTGAAACAGAAAAAAGTTGA

Protein

MSADSDCDELSQDGLSRLGDCEVCAANKALYTCPKCEVKTCCLNCVRIHKKELECDGIRDRTKFIRMKDFTDTDLLSDYRLLEECARFVWGVKRDDKKRFTRIDKDLPIHLFKLKMAARQRGIVLQFLAQNFTRHKNNTTRYNYKSNLINWRVEWIFPNVDKEPIKYVDEKCPEQKKLSHLLDKYINCDVPFEGSKSLSFYKAAGISGLKILLKAEKVKGSAKKFFELDPSESLAENLSGKCIVEFPIIFIVLKDHAYNFEIITPEDEFEEIEANKLVKEIKQDNHSVNGITNEEKYIKENHRKRPRELLTEKIAKEKRMALEKEIKEERKKKPKNLLFTTGYSSEESLEDSDNESETEKS

Uniprot

H9JDL6   A0A0L7LRD9   A0A194PQT5   A0A2A4JV77   A0A2H1V140   A0A437BDE7   + More
A0A212F5E4   S4P096   A0A0N1IIT5   A0A2A3EFK7   A0A336MM05   Q16KT6   W8BR75   A0A1I8N4X2   A0A1I8NUS8   A0A1Q3G046   A0A0L0CC68   K7IRC2   A0A232ELU2   A0A088AK32   A0A034WGC9   A0A0A1X8K5   A0A084W182   E2BTD0   A0A0J7KRD4   A0A0K8W056   A0A1Y1M1X0   A0A151J148   A0A151WFU9   A0A182QUG7   A0A1A9XT04   A0A1A9ULF1   E2AEM7   A0A1B6C7I4   A0A195BSA9   A0A026X0S2   A0A158NV87   A0A151I8W1   A0A1B0D0J0   D6X4S3   E0W1V8   A0A182V2W1   A0A1B0CTM3   A0A182WAY6   A0A182ICU8   A0A182LLZ4   Q7Q8P2   A0A1B6JC86   A0A182FLP5   A0A067R4B5   A0A1B6FTZ1   A0A2J7QFT7   T1DSJ0   B4M879   A0A182TGI7   N6U5P4   B4JNJ1   J3JZB4   B4NDP5   A0A0P5FIF4   A0A164QEU8   A0A0P6GEL3   E9HV91   Q29J68   A0A0V0GCD7   A0A1J1HJ79   A0A146MHR1   A0A0A9Y997   A0A0P4X273   A0A443SPH0  

Pubmed

19121390    26227816    26354079    22118469    23622113    17510324    + More
24495485    25315136    26108605    20075255    28648823    25348373    25830018    24438588    20798317    28004739    24508170    30249741    21347285    18362917    19820115    20566863    20966253    12364791    14747013    17210077    24845553    17994087    23537049    22516182    21292972    15632085    26823975    25401762   

EMBL

BABH01003324    JTDY01000260    KOB78027.1    KQ459596    KPI95323.1    NWSH01000517    + More
PCG75911.1    ODYU01000192    SOQ34565.1    RSAL01000083    RVE48449.1    AGBW02010203    OWR48955.1    GAIX01011007    JAA81553.1    KQ459717    KPJ20304.1    KZ288256    PBC30573.1    UFQT01001695    SSX31454.1    CH477938    EAT34923.1    EJY58005.1    GAMC01007222    GAMC01007220    JAB99333.1    GFDL01001854    JAV33191.1    JRES01000619    KNC29841.1    NNAY01003494    OXU19333.1    GAKP01004316    JAC54636.1    GBXI01007289    JAD07003.1    ATLV01019244    KE525266    KFB43976.1    GL450389    EFN81051.1    LBMM01003973    KMQ92937.1    GDHF01007771    JAI44543.1    GEZM01044290    JAV78325.1    KQ980575    KYN15497.1    KQ983203    KYQ46717.1    AXCN02001891    GL438870    EFN68102.1    GEDC01027845    JAS09453.1    KQ976417    KYM89905.1    KK107039    QOIP01000006    EZA61905.1    RLU21250.1    ADTU01027002    KQ978330    KYM95085.1    AJVK01009949    KQ971380    EEZ97683.1    DS235873    EEB19552.1    AJWK01027780    APCN01008106    AAAB01008942    EAA10029.2    GECU01010978    JAS96728.1    KK852705    KDR18016.1    GECZ01016316    JAS53453.1    NEVH01014842    PNF27456.1    GAMD01000170    JAB01421.1    CH940653    EDW62355.2    APGK01047873    KB741092    KB632050    ENN73907.1    ERL88299.1    CH916371    EDV92284.1    BT128595    AEE63552.1    CH964239    EDW81867.2    GDIQ01256721    JAJ95003.1    LRGB01002443    KZS07688.1    GDIQ01034231    JAN60506.1    GL732844    EFX64345.1    CH379063    EAL32434.2    GECL01001069    JAP05055.1    CVRI01000001    CRK86526.1    GDHC01000067    JAQ18562.1    GBHO01042866    GBHO01042864    GBHO01032340    GBHO01014829    GBHO01014828    GBHO01014827    GBHO01014826    GBHO01014825    GBHO01014824    GBHO01003726    GBRD01006548    GBRD01001476    JAG00738.1    JAG00740.1    JAG11264.1    JAG28775.1    JAG28776.1    JAG28777.1    JAG28778.1    JAG28779.1    JAG28780.1    JAG39878.1    JAG59273.1    GDRN01010858    JAI67908.1    NCKV01000921    RWS29428.1   

Proteomes

UP000005204    UP000037510    UP000053268    UP000218220    UP000283053    UP000007151    + More
UP000053240    UP000242457    UP000008820    UP000095301    UP000095300    UP000037069    UP000002358    UP000215335    UP000005203    UP000030765    UP000008237    UP000036403    UP000078492    UP000075809    UP000075886    UP000092443    UP000078200    UP000000311    UP000078540    UP000053097    UP000279307    UP000005205    UP000078542    UP000092462    UP000007266    UP000009046    UP000075903    UP000092461    UP000075920    UP000075840    UP000075882    UP000007062    UP000069272    UP000027135    UP000235965    UP000008792    UP000075902    UP000019118    UP000030742    UP000001070    UP000007798    UP000076858    UP000000305    UP000001819    UP000183832    UP000288716   

PRIDE

H9JDL6   

Pfam

PF04438   zf-HIT

Interpro

IPR007529   Znf_HIT        + More
IPR000315   Znf_B-box       

CDD

cd00021  BBOX

ProteinModelPortal

H9JDL6   A0A0L7LRD9   A0A194PQT5   A0A2A4JV77   A0A2H1V140   A0A437BDE7   + More
A0A212F5E4   S4P096   A0A0N1IIT5   A0A2A3EFK7   A0A336MM05   Q16KT6   W8BR75   A0A1I8N4X2   A0A1I8NUS8   A0A1Q3G046   A0A0L0CC68   K7IRC2   A0A232ELU2   A0A088AK32   A0A034WGC9   A0A0A1X8K5   A0A084W182   E2BTD0   A0A0J7KRD4   A0A0K8W056   A0A1Y1M1X0   A0A151J148   A0A151WFU9   A0A182QUG7   A0A1A9XT04   A0A1A9ULF1   E2AEM7   A0A1B6C7I4   A0A195BSA9   A0A026X0S2   A0A158NV87   A0A151I8W1   A0A1B0D0J0   D6X4S3   E0W1V8   A0A182V2W1   A0A1B0CTM3   A0A182WAY6   A0A182ICU8   A0A182LLZ4   Q7Q8P2   A0A1B6JC86   A0A182FLP5   A0A067R4B5   A0A1B6FTZ1   A0A2J7QFT7   T1DSJ0   B4M879   A0A182TGI7   N6U5P4   B4JNJ1   J3JZB4   B4NDP5   A0A0P5FIF4   A0A164QEU8   A0A0P6GEL3   E9HV91   Q29J68   A0A0V0GCD7   A0A1J1HJ79   A0A146MHR1   A0A0A9Y997   A0A0P4X273   A0A443SPH0  

PDB

2N94     E-value=0.00758797,     Score=92

KEGG

101739603    no KO assigned | (RefSeq) box C/D snoRNA protein 1

GO

GO:0046872   GO:0008270   GO:0000463   GO:0000492   GO:0005634   GO:0048254   GO:0070761  

Length:

361

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00181

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00954

outside

1  -  361

 

 

Pi

145.047625

Theta

133.311969

Tajima's D

0.148941

CLR

0.693226

CSRT

0.409929503524824

Interpretation

Uncertain