Gene

KWMTBOMO08591

Pre Gene Modal

BGIBMGA007612

Annotation

PREDICTED:_probable_tRNA_pseudouridine_synthase_2_[Papilio_polytes]

Location

Bomo_Chr15(+):523008-525314      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.678 Mitochondrial   Reliability : 1.273

CDS

ATGGCGAAATTATGTACTGGAGCATTGGCGTATAAAGCTTTAAATGGCTTGGTTTGTGTTTACAAACCACCATGTGTCACCATTAAACAAGTGCAGCATACAATTATAACTCATTTATGTAGAGACTTGAATGCATTACCAAATGGTCCTCAAGAGAAAAGAGTGGAGATTATAGGGGCCACAAACGAACCGATGAGTGTGTGTTTGGTGCCTAACTATGCAGACAACCCTCTAGCCTGTGGTCCTAGGTTCATAAACGAAGACTTTCGCTGCAGCTGGGCTACTCATTTAGGGTTCTTCAGCAGTGGAGTTCTGTTGTTAGGCATTAATGAAGGTACAAAACTGACCTATCTGTTGAACACAGCAAGACTCCCAAGAGCATACAAACTTCATGGGCAACTTGGTAAAGCTACTGACACATATTTTTGGAATGGCAAGACTGTTGAACGTTCTATGCACAAACACGTTAGTCGAGAGAAGATAGACAGAGTAGTTGCCCATATGCAGGCAGCACACCAAAAAGCTATGTATGAGTTATCGGGTGTACACATGGATTCTCAGACAATGTATGATCTAGCAGTAGAAGGACCAATCAGACCGGCTAACTCCAAAATTCCAGTTCTCTATGGCATCAAATGTGTCCATTTTGATTCACCTAATTTTACTTTAGAGATACATGCTGTCAATGAATATGAAAAATACCTGTGGACTCTAGTTCATGACCTTGGAGTACAACTAAAGACATCTGCTCACTGTACCGGAGTACAATGCATAAGGCAAGGAAAATTCGATCTTGAATATGCATTATTGAGGAAGCATTGGAAATTAGAATATATTGTTGATAATATGAACAGATGTCGAAAGGTCCTAGAGGAGAATGAAAACCTAATGAGACCTATTTCAGCAGTGTTGAGCATTTAG

Protein

MAKLCTGALAYKALNGLVCVYKPPCVTIKQVQHTIITHLCRDLNALPNGPQEKRVEIIGATNEPMSVCLVPNYADNPLACGPRFINEDFRCSWATHLGFFSSGVLLLGINEGTKLTYLLNTARLPRAYKLHGQLGKATDTYFWNGKTVERSMHKHVSREKIDRVVAHMQAAHQKAMYELSGVHMDSQTMYDLAVEGPIRPANSKIPVLYGIKCVHFDSPNFTLEIHAVNEYEKYLWTLVHDLGVQLKTSAHCTGVQCIRQGKFDLEYALLRKHWKLEYIVDNMNRCRKVLEENENLMRPISAVLSI

Uniprot

A0A0N0PES6   A0A194PPF2   A0A212F5E6   A0A437BDE3   S4NXN1   A0A2A4JWP5   + More
A0A2H1V126   A0A0L7LS46   A0A067QQB1   A0A151XFY7   E2AVX7   D6WJW6   A0A151JVA7   A0A195CPE0   E2BFD7   F4X4J5   A0A310SVC9   A0A151J2S7   A0A158NIK8   A0A195BDZ0   A0A026W0Q0   A0A1B6F4K2   J3JVH6   A0A0N0BCE7   A0A2P8Z0E8   A0A088ACD7   A0A1Y1N632   A0A182YHG6   A0A2S2PNT8   A0A1Q3FAM8   A0A1B6HM38   N6U2U0   A0A0L7R597   J9JY61   R4FLK2   A0A1B6MVL8   A0A182SX58   A0A2H8TML9   A0A1S4F7E6   A0A023EQY5   Q17D03   K7J8Y6   A0A146LC00   A0A0V0GD68   A0A0A9W4E3   Q7PYR6   B0WP94   A0A182X0A3   A0A182VNC8   A0A182LR28   A0A182HZZ3   A0A1B6D0L3   A0A182TYE8   A0A232ELH5   A0A182P574   A0A154P9F8   A0A182IW70   A0A182MN86   A0A182R4T1   A0A182N5U7   A0A182VWL0   A0A182QX86   A0A1B0GQA9   A0A182FNZ1   A0A1L8DRP1   A0A182JVI1   W5JIP0   A0A1I8N5P5   A0A2A3EFV1   A0A2R5L923   A0A182G548   A0A1Z5KYE7   A0A0P5U6P4   A0A0P6EDP1   A0A336MKI3   A0A293MS49   B7QF44   A0A1B6D7F2   A0A164ZTJ7   U4UPL4   E9GDE2   A0A1W4VHX8   B5DZE3   A0A034WM00   B4H734   A0A3S3QB49   A0A0K8V2A7   B4KLY9   B4QCR4   Q29QN4   A0A1I8PZT6   W8AJL0   B3N3F9   A0A023FIT9   A0A0A9W1G9   A0A3B0JDJ6   A0A2L2YL01   B4J4A0  

Pubmed

26354079    22118469    23622113    26227816    24845553    20798317    + More
18362917    19820115    21719571    21347285    24508170    30249741    22516182    29403074    28004739    25244985    23537049    24945155    17510324    20075255    26823975    25401762    12364791    14747013    17210077    20966253    28648823    20920257    23761445    25315136    26483478    28528879    21292972    15632085    17994087    25348373    18057021    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    24495485    26561354   

EMBL

KQ459717    KPJ20306.1    KQ459596    KPI95321.1    AGBW02010203    OWR48957.1    + More
RSAL01000083    RVE48447.1    GAIX01012087    JAA80473.1    NWSH01000517    PCG75913.1    ODYU01000192    SOQ34563.1    JTDY01000260    KOB78026.1    KK853055    KDR11978.1    KQ982179    KYQ59267.1    GL443213    EFN62399.1    KQ971342    EFA03912.2    KQ981733    KYN36552.1    KQ977481    KYN02357.1    GL448009    EFN85597.1    GL888656    EGI58625.1    KQ760132    OAD61836.1    KQ980336    KYN16489.1    ADTU01016901    KQ976513    KYM82390.1    KK107503    QOIP01000006    EZA49642.1    RLU22035.1    GECZ01024639    JAS45130.1    BT127244    AEE62206.1    KQ435915    KOX68838.1    PYGN01000255    PSN49976.1    GEZM01013714    JAV92350.1    GGMR01018503    MBY31122.1    GFDL01010487    JAV24558.1    GECU01031944    JAS75762.1    APGK01044467    APGK01044468    KB741026    ENN74931.1    KQ414654    KOC66052.1    ABLF02017859    ACPB03001240    GAHY01001348    JAA76162.1    GEBQ01000028    JAT39949.1    GFXV01003425    MBW15230.1    GAPW01002557    JAC11041.1    CH477301    EAT44256.1    GDHC01013430    JAQ05199.1    GECL01000335    JAP05789.1    GBHO01041318    JAG02286.1    AAAB01008987    EAA01531.3    DS232020    EDS32139.1    APCN01002026    GEDC01018101    JAS19197.1    NNAY01003549    OXU19214.1    KQ434831    KZC07810.1    AXCM01002444    AXCN02001153    AJVK01036052    GFDF01004975    JAV09109.1    ADMH02001287    ETN63158.1    KZ288256    PBC30635.1    GGLE01001791    MBY05917.1    JXUM01145062    KQ569913    KXJ68487.1    GFJQ02007149    JAV99820.1    GDIP01117299    JAL86415.1    GDIQ01065477    JAN29260.1    UFQS01000991    UFQT01000685    UFQT01000991    SSX08304.1    SSX26558.1    GFWV01018936    MAA43664.1    ABJB010278162    ABJB010341161    ABJB010599490    ABJB011036885    DS923918    EEC17466.1    GEDC01015690    JAS21608.1    LRGB01000687    KZS16741.1    KB632309    ERL92096.1    GL732540    EFX82494.1    CM000071    EDY69564.1    GAKP01003782    JAC55170.1    CH479216    EDW33567.1    NCKU01004011    RWS06582.1    GDHF01019265    JAI33049.1    CH933808    EDW10778.1    KRG05483.1    CM000362    CM002911    EDX05853.1    KMY91696.1    AE013599    BT024356    AAM68342.1    ABC86418.1    GAMC01021672    JAB84883.1    CH954177    EDV59841.1    GBBK01002970    JAC21512.1    GBHO01041317    GBHO01020465    JAG02287.1    JAG23139.1    OUUW01000001    SPP73310.1    IAAA01031175    LAA08808.1    CH916367    EDW00580.1   

Proteomes

UP000053240    UP000053268    UP000007151    UP000283053    UP000218220    UP000037510    + More
UP000027135    UP000075809    UP000000311    UP000007266    UP000078541    UP000078542    UP000008237    UP000007755    UP000078492    UP000005205    UP000078540    UP000053097    UP000279307    UP000053105    UP000245037    UP000005203    UP000076408    UP000019118    UP000053825    UP000007819    UP000015103    UP000075901    UP000008820    UP000002358    UP000007062    UP000002320    UP000076407    UP000075903    UP000075882    UP000075840    UP000075902    UP000215335    UP000075885    UP000076502    UP000075880    UP000075883    UP000075900    UP000075884    UP000075920    UP000075886    UP000092462    UP000069272    UP000075881    UP000000673    UP000095301    UP000242457    UP000069940    UP000249989    UP000001555    UP000076858    UP000030742    UP000000305    UP000192221    UP000001819    UP000008744    UP000285301    UP000009192    UP000000304    UP000000803    UP000095300    UP000008711    UP000268350    UP000001070   

PRIDE

Q29QN4   

Pfam

PF01509   TruB_N

Interpro

IPR020103   PsdUridine_synth_cat_dom_sf        + More
IPR002501   PsdUridine_synth_N       
IPR039048   Trub2       
IPR013026   TPR-contain_dom       
IPR011990   TPR-like_helical_dom_sf       
IPR019734   TPR_repeat       

SUPFAM

SSF55120   SSF55120        + More
SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

A0A0N0PES6   A0A194PPF2   A0A212F5E6   A0A437BDE3   S4NXN1   A0A2A4JWP5   + More
A0A2H1V126   A0A0L7LS46   A0A067QQB1   A0A151XFY7   E2AVX7   D6WJW6   A0A151JVA7   A0A195CPE0   E2BFD7   F4X4J5   A0A310SVC9   A0A151J2S7   A0A158NIK8   A0A195BDZ0   A0A026W0Q0   A0A1B6F4K2   J3JVH6   A0A0N0BCE7   A0A2P8Z0E8   A0A088ACD7   A0A1Y1N632   A0A182YHG6   A0A2S2PNT8   A0A1Q3FAM8   A0A1B6HM38   N6U2U0   A0A0L7R597   J9JY61   R4FLK2   A0A1B6MVL8   A0A182SX58   A0A2H8TML9   A0A1S4F7E6   A0A023EQY5   Q17D03   K7J8Y6   A0A146LC00   A0A0V0GD68   A0A0A9W4E3   Q7PYR6   B0WP94   A0A182X0A3   A0A182VNC8   A0A182LR28   A0A182HZZ3   A0A1B6D0L3   A0A182TYE8   A0A232ELH5   A0A182P574   A0A154P9F8   A0A182IW70   A0A182MN86   A0A182R4T1   A0A182N5U7   A0A182VWL0   A0A182QX86   A0A1B0GQA9   A0A182FNZ1   A0A1L8DRP1   A0A182JVI1   W5JIP0   A0A1I8N5P5   A0A2A3EFV1   A0A2R5L923   A0A182G548   A0A1Z5KYE7   A0A0P5U6P4   A0A0P6EDP1   A0A336MKI3   A0A293MS49   B7QF44   A0A1B6D7F2   A0A164ZTJ7   U4UPL4   E9GDE2   A0A1W4VHX8   B5DZE3   A0A034WM00   B4H734   A0A3S3QB49   A0A0K8V2A7   B4KLY9   B4QCR4   Q29QN4   A0A1I8PZT6   W8AJL0   B3N3F9   A0A023FIT9   A0A0A9W1G9   A0A3B0JDJ6   A0A2L2YL01   B4J4A0  

PDB

1SGV     E-value=0.000244412,     Score=104

KEGG

101740103    K23497 mitochondrial mRNA pseudouridine synthase TRUB2 [EC:5.4.99.-] | (RefSeq) probable tRNA pseudo

GO

GO:0003723   GO:0009982   GO:0001522   GO:0006396   GO:0106029   GO:0009451   GO:0016620   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR13195  

Length:

306

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.57444

Exp number, first 60 AAs:

0.01655

Total prob of N-in:

0.03775

outside

1  -  306

 

 

Pi

233.893493

Theta

194.787967

Tajima's D

0.683931

CLR

0.03179

CSRT

0.568621568921554

Interpretation

Uncertain