SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08571  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA013806
Annotation
PREDICTED:_uncharacterized_protein_LOC105841662_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.314
 

Sequence

CDS
ATGTACCGCACACCCACGACTTCGGGCGCCGCTAAAAACCCTACCACTCCCAGCCCTGCTACCACAACCGCAGTGGCGCAGGGTGCTGCAAAGACGTTTATCAAAAGACCGGACACCAAAAGAAGATCACTGGATAATATGGACGTTTATAAAAAGCAGCAACAAAACTACGCTGCACTGCCTAGTGATCAGCTCCTCCAGGAGATAATGAAGACTTTTGAGGACATACCCTCGAAAGTTCAAGAGTACCCTCAGATGAGGAGGGATATCAAACAGTTCCTGGAGGTGCAGTCAGATAAGGGTATACGAGCAATCTTCGAGCTCAGTCGGCGCATCCAAAGTCTCGAAGCAGAGGCCCCGAAGACAAGGACACTTGCAGAAACCTCGTCGTCTTATGTCCAAGATATCATACTTGGGAGGCTGGGAGAGGTAGAAACGACACTGACTGAGCGACTGAACGAGATGGAGAGAAGTCTGAAAAGGGACATAATACAACTGAACGACGAAAATGACGGCCGGGGCTCCGACATGATCGACAAGATCATCGACAGGATCGACGAGACCAGAGCTGCCATGGACCAAACGACCGAGGCGGTCGAGAGTCGAACGCACGCTCTCGTCAAGGATCTGGTCGGTGGTCTTGCCGATGATGTCGTTGCAGCAAAACAAGAACTTACGGAGGTCGCAAAGGGACTGGCATGCGATATAAACCTAGCTCCAGTCTCTAAGTCGTACGCCAGCGTCGCAGCAGCCAAACCCGTCCACCGTCCTGCACTTCATTCGATGGCAGTCACTCTCGAAGGTAGTCAGGAGACTGCTGACGAGGTGCTCGCCAGGGTGAAGAGGGCAGTCGACGCCAGAGGCACTGGACTTAAAATTAACAAAGTACGCAAGGCAAAAAACCAAACTATTATATTGGGTTGCGACACCGAGGAGGAAAGAAAGAAAGTCCAAGAGATAATAGAGAGTCGTGGGGATGGACTGGTAGTAGCGCCCATGAAGAACAAGAGCCCTCTCGTTGTCCTGAAGGATGTTTTCGTGGAAAGTGAAGACGACGATATGATTAAGGCACTCCACGTCCAAAACAAGAACATCTTCATGGGCCTACCGGAAGAAGACAGGCAAATGGAGATAAAATTTAAAAAACGTACCAGAAACCCAAAGACCGCGCACATCATCTTGCAAGTGAAGCCGAAAGTATGGCAGAGGATGACGGAAGCTGGAGCCCTCTATCTGGACCTTCAAAGGGTCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACGAGGTGCCTTGCATTTGGACATGGTCGTAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAAAAATGCGCAGACTTTATCGCAGGGACCGAACCGCGGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCTGACCACAACGCTTTTAGCGCCGAATGCCCGGTACGAAAAAAGTGGGACTACTTGGCTCGCGCAAATACCACATATGCATGA
Protein
MYRTPTTSGAAKNPTTPSPATTTAVAQGAAKTFIKRPDTKRRSLDNMDVYKKQQQNYAALPSDQLLQEIMKTFEDIPSKVQEYPQMRRDIKQFLEVQSDKGIRAIFELSRRIQSLEAEAPKTRTLAETSSSYVQDIILGRLGEVETTLTERLNEMERSLKRDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAAKQELTEVAKGLACDINLAPVSKSYASVAAAKPVHRPALHSMAVTLEGSQETADEVLARVKRAVDARGTGLKINKVRKAKNQTIILGCDTEEERKKVQEIIESRGDGLVVAPMKNKSPLVVLKDVFVESEDDDMIKALHVQNKNIFMGLPEEDRQMEIKFKKRTRNPKTAHIILQVKPKVWQRMTEAGALYLDLQRVRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPRCCNCSHSGLRKADHNAFSAECPVRKKWDYLARANTTYA

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00098   zf-CCHC
Interpro
IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D

Ontologies

Topology

Length:
508
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00135
Exp number, first 60 AAs:
0.00135
Total prob of N-in:
0.00574
outside
1  -  508
 
 

Population Genetic Test Statistics

Pi
74.986418
Theta
116.744602
Tajima's D
0.25893
CLR
0
CSRT
0.446927653617319
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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