Gene

KWMTBOMO08567

Pre Gene Modal

BGIBMGA009307

Annotation

PREDICTED:_thioredoxin-like_protein_4A_[Bombyx_mori]

Location

Bomo_Chr14(-):13310353-13311954      View in EpiBrowser

Full name

Thioredoxin-like protein      

Location in the cell

Cytoplasmic   Reliability : 3.2

CDS

ATGAGTTATATGCTAGGACATCTACACAATGGTTGGCAAGTAGATCAGGCCATTCTATCAGAAGAAGACCGTGTAGTGGTTATAAGGTTTGGACACGACTGGGACCCAACATGTATGAAAATGGATGAAGTATTATACAGCATTGCGGAAAAAGTAAAAAATTTTGCTGTCATATATTTAGTTGACATTACAGAAGTTCCAGATTTTAATAAAATGTATGAATTATACGATCCATGCACAGTGATGTTCTTCTTCCGCAACAAACACATAATGATTGACTTGGGGACTGGCAACAACAATAAAATCAACTGGCCTCTCGAAGACAAGCAGGAGATGATTGATATTATTGAAACTGTGTACAGAGGGGCAAGAAAAGGACGAGGTCTTGTTGTCTCACCGAAAGATTACTCTACCAAATACAGATATTAG

Protein

MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVSPKDYSTKYRY

Description

Plays role in pre-mRNA splicing.

Similarity

Belongs to the DIM1 family.

Uniprot

A0A2A4J717   A0A194RB12   A0A194Q725   H9JIF7   S4PTT3   A0A212FFU0   + More
M4JSD8   Q1HQS6   A0A182G8J6   A0A1Q3G2K7   A0A0L7LFT5   E0VF07   A0A2J7PWU8   A0A067RGH2   A0A2P8XHQ8   D2A3I2   A0A443QMQ0   A0A182MV62   A0A182RMD6   A0A182QJ52   B0WIR3   A0A1B6FFU1   A0A1B6K1I0   A0A401S022   A0A401PJ37   K4FT74   N6UPC7   A0A1J1IMT0   A0A1A9XJM2   A0A1A9VW13   A0A1B0BCW6   A0A1A9ZCT5   A0A1I8NBC0   A0A0L0CHP3   A0A0K8TNP0   A0A084VXZ9   A0A182JCD9   T1E8Y7   U5EMR1   A0A182Y3F2   A0A182PCQ8   A0A2M3ZCW6   A0A2M4AV46   A0A2M4C2P4   A0A182UZ11   A0A182MZ06   W5JAR6   A0A182KDL8   A0A182W6N7   A0A182UHD5   A0A182XL73   A0A182L0W4   Q7Q496   A0A182ICF4   A0A3B3D624   A0A3B3HCV1   A0A437CU22   A0A3P9K893   A0A452TE24   A0A1Z5L9G2   A0A1W4WAM0   B4LT76   A0A0J9QVM5   B4KES0   A0A3B0K2P8   Q29LJ5   B4GPV4   A0A034WVD8   B4NYK0   A0A0M3QTE6   A0A1I8PA76   B3MU37   B4MZM2   B4I387   B4JCM2   B3N3R8   A0A0A1XKY1   A0A0K8VZC2   Q8SZ87   A0A1B0GMU9   A0A0K8SY97   A0A1S4EIW1   A0A0C9R976   A0A2S2N4H7   G1MTF6   A0A151NFX5   A0A3L8SMA5   A0A093S5S7   A0A091FRU6   A0A091W0E6   A0A3M0KSL0   K7FC77   A0A1V4KEF4   A0A091P4G4   U3KFU6   A0A0Q3PPD1   A0A0A0A1Q0   A0A1U7S8P1   A0A087QXZ4   A0A452GXA8  

Pubmed

26354079    19121390    23622113    22118469    23473738    17204158    + More
17510324    26483478    26227816    20566863    24845553    29403074    18362917    19820115    30297745    23056606    23537049    25315136    26108605    26369729    24438588    25244985    20920257    23761445    20966253    12364791    14747013    17210077    29451363    17554307    24813606    28528879    17994087    22936249    15632085    25348373    17550304    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    26823975    20838655    22293439    30282656    17381049    28562605   

EMBL

NWSH01002949    PCG67240.1    KQ460436    KPJ14689.1    KQ459337    KPJ01347.1    + More
BABH01027282    GAIX01011488    JAA81072.1    AGBW02008766    OWR52598.1    JX867717    ODYU01012954    AGC94855.1    SOQ59510.1    DQ440368    CH477389    ABF18401.1    EAT42010.1    JXUM01047822    KQ561534    KXJ78243.1    GFDL01000990    JAV34055.1    JTDY01001364    KOB74071.1    DS235100    EEB11981.1    NEVH01020867    PNF20806.1    KK852480    KDR22966.1    PYGN01002093    PSN31526.1    KQ971338    EFA02875.1    NCKU01005647    RWS04314.1    AXCM01010852    AXCN02000789    DS231951    EDS28640.1    GECZ01020693    JAS49076.1    GECU01002411    JAT05296.1    BEZZ01000038    GCC23761.1    BFAA01000596    GCB73153.1    JX052717    AFK10945.1    APGK01011543    KB738503    KB632168    ENN82581.1    ERL89396.1    CVRI01000054    CRL00852.1    JXJN01012155    JRES01000385    KNC31737.1    GDAI01001596    JAI16007.1    ATLV01018234    KE525226    KFB42843.1    AXCP01000428    GAMD01002343    JAA99247.1    GANO01000908    JAB58963.1    GGFM01005646    MBW26397.1    GGFK01011320    MBW44641.1    GGFJ01010441    MBW59582.1    ADMH02002027    GGFL01004237    ETN59879.1    MBW68415.1    AAAB01008964    EAA12234.1    APCN01000798    CM012447    RVE66452.1    GFJQ02002924    JAW04046.1    CH940649    EDW64918.1    CM002910    KMY88061.1    CH933807    EDW12970.1    OUUW01000004    SPP79886.1    CH379060    EAL34050.1    CH479187    EDW39626.1    GAKP01000650    JAC58302.1    CM000157    EDW87633.1    CP012523    ALC38749.1    CH902624    EDV33366.1    CH963920    EDW77807.1    CH480820    EDW54232.1    CH916368    EDW04186.1    CH954177    EDV57727.1    GBXI01003094    JAD11198.1    GDHF01016577    GDHF01015459    GDHF01008076    JAI35737.1    JAI36855.1    JAI44238.1    AE014134    AY071048    AAF51017.2    AAL48670.1    AJVK01004176    GBRD01007627    GDHC01000833    JAG58194.1    JAQ17796.1    GBYB01003336    JAG73103.1    GGMT01000314    MBY12000.1    AKHW03003201    KYO35425.1    QUSF01000013    RLW04356.1    KL670090    KFW78269.1    KL447416    KFO73240.1    KL411540    KFR09147.1    QRBI01000104    RMC16289.1    AGCU01158196    AGCU01158197    LSYS01003422    OPJ82785.1    KK844575    KFP86450.1    AGTO01021309    LMAW01001669    KQK82923.1    KL870344    KGL87897.1    KL225997    KFM06098.1   

Proteomes

UP000218220    UP000053240    UP000053268    UP000005204    UP000007151    UP000008820    + More
UP000069940    UP000249989    UP000037510    UP000009046    UP000235965    UP000027135    UP000245037    UP000007266    UP000285301    UP000075883    UP000075900    UP000075886    UP000002320    UP000287033    UP000288216    UP000019118    UP000030742    UP000183832    UP000092443    UP000078200    UP000092460    UP000092445    UP000095301    UP000037069    UP000030765    UP000075880    UP000076408    UP000075885    UP000075903    UP000075884    UP000000673    UP000075881    UP000075920    UP000075902    UP000076407    UP000075882    UP000007062    UP000075840    UP000261560    UP000001038    UP000265180    UP000265200    UP000291021    UP000192221    UP000008792    UP000009192    UP000268350    UP000001819    UP000008744    UP000002282    UP000092553    UP000095300    UP000007801    UP000007798    UP000001292    UP000001070    UP000008711    UP000000803    UP000092462    UP000079169    UP000001645    UP000050525    UP000276834    UP000053258    UP000053760    UP000053283    UP000269221    UP000007267    UP000190648    UP000016665    UP000051836    UP000053858    UP000189705    UP000053286    UP000291020   

PRIDE

H9JIF7    Q8SZ87   

Pfam

PF02966   DIM1

Interpro

IPR036249   Thioredoxin-like_sf        + More
IPR004123   Dim1       

SUPFAM

SSF52833   SSF52833       

CDD

cd02954  DIM1

ProteinModelPortal

A0A2A4J717   A0A194RB12   A0A194Q725   H9JIF7   S4PTT3   A0A212FFU0   + More
M4JSD8   Q1HQS6   A0A182G8J6   A0A1Q3G2K7   A0A0L7LFT5   E0VF07   A0A2J7PWU8   A0A067RGH2   A0A2P8XHQ8   D2A3I2   A0A443QMQ0   A0A182MV62   A0A182RMD6   A0A182QJ52   B0WIR3   A0A1B6FFU1   A0A1B6K1I0   A0A401S022   A0A401PJ37   K4FT74   N6UPC7   A0A1J1IMT0   A0A1A9XJM2   A0A1A9VW13   A0A1B0BCW6   A0A1A9ZCT5   A0A1I8NBC0   A0A0L0CHP3   A0A0K8TNP0   A0A084VXZ9   A0A182JCD9   T1E8Y7   U5EMR1   A0A182Y3F2   A0A182PCQ8   A0A2M3ZCW6   A0A2M4AV46   A0A2M4C2P4   A0A182UZ11   A0A182MZ06   W5JAR6   A0A182KDL8   A0A182W6N7   A0A182UHD5   A0A182XL73   A0A182L0W4   Q7Q496   A0A182ICF4   A0A3B3D624   A0A3B3HCV1   A0A437CU22   A0A3P9K893   A0A452TE24   A0A1Z5L9G2   A0A1W4WAM0   B4LT76   A0A0J9QVM5   B4KES0   A0A3B0K2P8   Q29LJ5   B4GPV4   A0A034WVD8   B4NYK0   A0A0M3QTE6   A0A1I8PA76   B3MU37   B4MZM2   B4I387   B4JCM2   B3N3R8   A0A0A1XKY1   A0A0K8VZC2   Q8SZ87   A0A1B0GMU9   A0A0K8SY97   A0A1S4EIW1   A0A0C9R976   A0A2S2N4H7   G1MTF6   A0A151NFX5   A0A3L8SMA5   A0A093S5S7   A0A091FRU6   A0A091W0E6   A0A3M0KSL0   K7FC77   A0A1V4KEF4   A0A091P4G4   U3KFU6   A0A0Q3PPD1   A0A0A0A1Q0   A0A1U7S8P1   A0A087QXZ4   A0A452GXA8  

PDB

6QX9     E-value=3.17324e-77,     Score=727

KEGG

101740857    K12859 U5 snRNP protein, DIM1 family | (RefSeq) thioredoxin-like protein 4A

PATHWAY

03040    Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0005682   GO:0000398   GO:0046540   GO:0006397   GO:0008380   GO:0030532   GO:0071011   GO:0005829   GO:0031965   GO:0071005   GO:0005681   GO:0007018   GO:0008017   GO:0022891   GO:0004812   GO:0006418   GO:0003676   GO:0016876   GO:0043039  

PANTHER

PTHR12052  

Subcellular location

Nucleus  

Length:

142

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00986

Exp number, first 60 AAs:

0.00736

Total prob of N-in:

0.13883

outside

1  -  142

 

 

Pi

272.44504

Theta

195.682663

Tajima's D

1.143642

CLR

0

CSRT

0.694215289235538

Interpretation

Uncertain