Gene

KWMTBOMO08564  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009383

Annotation

PREDICTED:_vacuolar_protein_sorting_26_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr14(+):13268665-13273545      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.124

CDS

ATGTCTATAAATCTCTCTATATGCTTAAAACGTGCAAGTAAAATATATCACGAAGGGGAAATAATCGCTGGCGTGGTGGTGGTGGAGAGCAGTAGCGATGTGCGACATGAGGGCCTTTCACTCACTATGGAGGGATGTGTCAACTTGCAGCTGAGCACCAAGAATGTGGGCATATTTGAAGCTTTTTCAAATAGCATTAAGCCAATAAATTTAATAAATGTTACAGTTGAGCTAGCTCTCCCAGGTAAGATCCCTGTAGGCATCACAGAGATTCCATTTGAGATGCCACTGCGGGCCCGTCAGGCTGTATCTCCAGGATATCCTGGTCTACTGGAGACTTACCATGGAGTGTTTGTTAATATAATGTACACACTAAAGTGTAATATGAAGAGATCATTTCTCAATAAGCCACTGTTCACCACTTGCCAGTTCTTTGTACAGTATAGACATCAAGAACGCCCAGTACAGAAGGGTGTGCGGTGCGAGATGTCCGGTGCGTCGGTGCGCGCTGCGGGCACAGTGCCGCACTTCTCTGTGTTCGCAGATCTCACCTCCACCGTCTGCGCGTTGGATGCACCTGTCACTGGAAAGATCAGAGTTGACGAGTGCTCGGTACCCATCAAGTCCATTGAACTACAATTAGTGCGCGTTGAGACATGCGGCTGCGCTGACGGCTACTCTAGGGATGCAACCGAAATCCAGAATATCCAGATAGGGGAGGGAGACGTGGTGCGCGGCCGAGACATCCCGCTGTACATGGTGCTGCCGCGACTCTTCACTTGCCCCACCACCACCACGCTCAACTTTAAAATAGAGTTTGAACTGAACATCGCCGTGATATTTGAAGACGACTACTTGGTTACAGAAAATTTTCCGATATTACTTCTAAGGTGCAAGTAG

Protein

MSINLSICLKRASKIYHEGEIIAGVVVVESSSDVRHEGLSLTMEGCVNLQLSTKNVGIFEAFSNSIKPINLINVTVELALPGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRCEMSGASVRAAGTVPHFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLNFKIEFELNIAVIFEDDYLVTENFPILLLRCK

Uniprot

Q2F5U5   H9JIN3   A0A2H1X1J7   A0A2A4K3N3   A0A2A4K2J9   S4PDS2   + More
A0A194Q730   A0A212FFT3   A0A194RB22   A0A2A4K2X2   A0A0L7KU73   A0A2J7R457   K7ISC1   A0A232FDY8   A0A067QYX5   A0A1W5ACZ0   A0A158NSE5   A0A151HZ03   A0A0J7L5U6   W5MC60   E2AX49   R7U226   A0A1B6F1V8   A0A1B6J7C1   A0A195ES47   A0A151WMI1   Q6DHL2   E3TEZ4   E3TDC7   A0A2A3EKV9   M3ZL23   A0A151IE25   A0A3B4DPY4   H2MGT3   A0A3B3TYH4   H2SWQ0   A0A0L7RC82   A0A3P9JKC3   A0A087XL13   A0A3P9A141   A0A3S4QC84   A0A0S7H395   W5KNE3   A0A1S3I9N6   A0A0M8ZQ98   A0A210QUP8   A0A3Q2PZE5   A0A2I4CP14   A0A1Y1LVE8   A0A3Q3ER83   A0A3B3SWW7   A0A1X7UE65   G1NNY7   A0A1Y1LPK3   A0A3B4XXJ7   A0A3B4T8F1   Q4FZN8   E0VPR8   A0A1A8QYM4   A0A3Q2Y5I9   D7EJE8   A0A3Q2CG14   A0A1V4J3S6   A0A1A8ML13   A0A226PJH4   E1BSI1   B5X5W3   A0A402F8P1   A0A3Q3MPV3   H0Z3F4   A0A1A8GFN4   A0A3B5B818   A0A1L8HCE2   A0A3L8DIP8   U3IWV7   A0A096NJ37   A0A2K5IB84   F6QKV9   A0A0T6B3J5   A0A1A8IIL4   A0A1A8D989   A0A1A8B5T9   A0A2G8KWE7   A0A218US34   G1P4W8   A0A2K6AYM5   A0A2K6KVA1   A0A2K5ZGU9   A0A2K6QSB0   A0A2K5KZT4   G7P107   G7MMS9   A0A1U7SH90   W4XNG2   A0A1E1XH15   A0A0Q3PG51   A0A1U7R9T7   I0FND0   A0A151MEL2   G3SB23  

Pubmed

19121390    23622113    26354079    22118469    26227816    20075255    + More
28648823    24845553    21347285    20798317    23254933    23594743    20634964    23542700    17554307    21551351    25069045    25329095    28812685    28004739    29240929    20838655    20566863    18362917    19820115    24621616    15592404    20433749    20360741    27762356    30249741    23749191    20431018    29023486    21993624    25362486    22002653    17431167    25319552    28503490    28071753    22293439    22398555   

EMBL

DQ311328    ABD36272.1    BABH01027276    ODYU01012290    SOQ58524.1    NWSH01000219    + More
PCG78280.1    PCG78279.1    GAIX01003536    JAA89024.1    KQ459337    KPJ01352.1    AGBW02008766    OWR52594.1    KQ460436    KPJ14694.1    PCG78278.1    JTDY01005622    KOB66818.1    NEVH01007815    PNF35610.1    NNAY01000349    OXU28996.1    KK852820    KDR15577.1    ADTU01024876    KQ976730    KYM76473.1    LBMM01000637    KMQ97928.1    AHAT01003118    AHAT01003119    AHAT01003120    GL443520    EFN61999.1    AMQN01010754    KB308480    ELT97716.1    GECZ01025559    JAS44210.1    GECU01012633    JAS95073.1    KQ981993    KYN31053.1    KQ982942    KYQ49074.1    CU633885    BC075958    AAH75958.1    GU588927    ADO28880.1    GU588357    ADO28313.1    KZ288226    PBC31892.1    KQ977894    KYM98963.1    KQ414616    KOC68438.1    AYCK01024797    NCKU01008995    RWS01546.1    GBYX01445785    GBYX01445784    JAO35654.1    KQ435911    KOX68905.1    NEDP02001809    OWF52426.1    GEZM01050490    JAV75576.1    GEZM01050492    JAV75573.1    BC099318    AAH99318.1    DS235371    EEB15374.1    HAEH01013714    HAEI01017106    SBR98114.1    DS497704    EFA12716.1    LSYS01009367    OPJ66407.1    HAEF01016278    HAEG01010240    SBR57437.1    AWGT02000067    OXB79517.1    AADN05000841    BT046432    ACI66233.1    BDOT01000143    GCF52809.1    ABQF01050728    ABQF01050729    HAEB01012057    HAEC01002503    SBQ70580.1    CM004468    OCT93774.1    QOIP01000007    RLU20325.1    ADON01026841    ADON01026842    AHZZ02021497    AHZZ02021498    AAMC01116142    AAMC01116143    LJIG01016069    KRT81707.1    HAED01010023    HAEE01016360    SBQ96235.1    HADZ01019054    HAEA01002360    SBQ30840.1    HADY01024387    HAEJ01000604    SBP62872.1    MRZV01000333    PIK52336.1    MUZQ01000153    OWK56559.1    AAPE02043825    AQIA01044460    AQIA01044461    CM001278    EHH51871.1    JSUE03027124    JU322030    JU332351    JU332352    JU473631    CM001255    AFE65786.1    AFH30435.1    EHH16976.1    AAGJ04141463    AAGJ04141464    GFAC01000822    JAT98366.1    LMAW01002568    KQK79723.1    JV045882    JV045883    JV045884    JV045885    JV045886    AFI35956.1    AKHW03006231    KYO22830.1    CABD030119306   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000235965    UP000002358    UP000215335    UP000027135    UP000192224    UP000005205    UP000078540    UP000036403    UP000018468    UP000000311    UP000014760    UP000078541    UP000075809    UP000000437    UP000221080    UP000242457    UP000002852    UP000078542    UP000261440    UP000001038    UP000261500    UP000005226    UP000053825    UP000265200    UP000028760    UP000265140    UP000285301    UP000018467    UP000085678    UP000053105    UP000242188    UP000265000    UP000192220    UP000261660    UP000261540    UP000007879    UP000001645    UP000261360    UP000261420    UP000009046    UP000264820    UP000007266    UP000265020    UP000190648    UP000198419    UP000000539    UP000087266    UP000288954    UP000261640    UP000007754    UP000261400    UP000186698    UP000279307    UP000016666    UP000028761    UP000233080    UP000008143    UP000230750    UP000197619    UP000001074    UP000233120    UP000233180    UP000233140    UP000233200    UP000233060    UP000009130    UP000233100    UP000006718    UP000189705    UP000007110    UP000051836    UP000189706    UP000050525    UP000001519   

PRIDE

Q2F5U5    H9JIN3   

Pfam

PF03643   Vps26

Interpro

IPR014752   Arrestin_C        + More
IPR028934   Vps26-related       
IPR014756   Ig_E-set       

SUPFAM

SSF81296   SSF81296       

Gene 3D

2.60.40.640    

ProteinModelPortal

Q2F5U5   H9JIN3   A0A2H1X1J7   A0A2A4K3N3   A0A2A4K2J9   S4PDS2   + More
A0A194Q730   A0A212FFT3   A0A194RB22   A0A2A4K2X2   A0A0L7KU73   A0A2J7R457   K7ISC1   A0A232FDY8   A0A067QYX5   A0A1W5ACZ0   A0A158NSE5   A0A151HZ03   A0A0J7L5U6   W5MC60   E2AX49   R7U226   A0A1B6F1V8   A0A1B6J7C1   A0A195ES47   A0A151WMI1   Q6DHL2   E3TEZ4   E3TDC7   A0A2A3EKV9   M3ZL23   A0A151IE25   A0A3B4DPY4   H2MGT3   A0A3B3TYH4   H2SWQ0   A0A0L7RC82   A0A3P9JKC3   A0A087XL13   A0A3P9A141   A0A3S4QC84   A0A0S7H395   W5KNE3   A0A1S3I9N6   A0A0M8ZQ98   A0A210QUP8   A0A3Q2PZE5   A0A2I4CP14   A0A1Y1LVE8   A0A3Q3ER83   A0A3B3SWW7   A0A1X7UE65   G1NNY7   A0A1Y1LPK3   A0A3B4XXJ7   A0A3B4T8F1   Q4FZN8   E0VPR8   A0A1A8QYM4   A0A3Q2Y5I9   D7EJE8   A0A3Q2CG14   A0A1V4J3S6   A0A1A8ML13   A0A226PJH4   E1BSI1   B5X5W3   A0A402F8P1   A0A3Q3MPV3   H0Z3F4   A0A1A8GFN4   A0A3B5B818   A0A1L8HCE2   A0A3L8DIP8   U3IWV7   A0A096NJ37   A0A2K5IB84   F6QKV9   A0A0T6B3J5   A0A1A8IIL4   A0A1A8D989   A0A1A8B5T9   A0A2G8KWE7   A0A218US34   G1P4W8   A0A2K6AYM5   A0A2K6KVA1   A0A2K5ZGU9   A0A2K6QSB0   A0A2K5KZT4   G7P107   G7MMS9   A0A1U7SH90   W4XNG2   A0A1E1XH15   A0A0Q3PG51   A0A1U7R9T7   I0FND0   A0A151MEL2   G3SB23  

PDB

5F0J     E-value=4.9916e-07,     Score=127

KEGG

692917    no KO assigned | (RefSeq) vacuolar protein sorting 26

GO

GO:0006886   GO:0005768   GO:0005623   GO:0032456   GO:1990126  

PANTHER

PTHR12233  

Length:

299

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.319969999999999

Exp number, first 60 AAs:

0.00076

Total prob of N-in:

0.02564

outside

1  -  299

 

 

Pi

23.121239

Theta

37.217692

Tajima's D

-2.399441

CLR

0.659561

CSRT

0.00154992250387481

Interpretation

Uncertain