Gene

KWMTBOMO08548

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(+):12648943-12650948      View in EpiBrowser

Full name

Probable RNA-directed DNA polymerase from transposon BS       + More
Probable RNA-directed DNA polymerase from transposon X-element      

Alternative Name

Reverse transcriptase

Location in the cell

Nuclear   Reliability : 1.838

CDS

ATGGTCAGGAACGACAGGCTCTCTGCCCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTTGGTATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACCCCGACTCACTATCCGCTAAATATCGCGCATCGCCCGGATATACTCGACATAGCGTTATTAAAAAACGTAACTCTGCGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTATCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACGTCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTATTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTCGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCTGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGCTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAACTGTATGAGCGTCTGCTCTACAAACGCCTCAGAGACTTCGTCTCATCCAAGGGCATTCTTATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAATGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTGGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAG

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSIPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARILKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNVSCSSYGTSCRTALFDIESREPAPPHDLSQLESRKALSSHPSYLAYSSTIFPGRRRPI

Catalytic Activity

a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)

Cofactor

Mg(2+)
Mn(2+)

Miscellaneous

At least 30 copies of X-element are present in the genome and some elements are polymorphic between different strains.

Keywords

Nucleotidyltransferase   RNA-directed DNA polymerase   Transferase   Transposable element  

Feature

chain  Probable RNA-directed DNA polymerase from transposon BS

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A139WA11   A0A023EYS8   A0A2S2QEE0   X1WVL6   A0A1Y1K0C8   A0A2S2PEZ9   J9LC21   A0A2S2PPK8   V5GNF3   A0A2S2PJ52   X1WNI2   X1WLB2   A0A2S2NJB5   A0A224XB44   A0A1B6MIM7   A0A087THU2   A0A224X6Q4   A0A2S2N6Q7   A0A1B6C2V8   A0A087UCW3   X1WKS2   J9M522   A0A224X6T4   A0A224X6S1   J9KLB1   A0A087U3K8   A0A2J7R7D0   X1WZH0   J9MAC6   A0A2S2NCK2   A0A2S2P6S3   A0A087T3W0   A0A2S2PJG2   A0A2S2NPT6   A0A224XF24   A0A224XI99   A0A224X6U5   A0A2S2PA10   A0A1Y1KFT3   A0A2S2NH02   A0A2S2Q2R8   A0A2S2Q383   J9KPF1   A0A1Y1LKN6   A0A2S2QDN9   Q95SX7   A0A1Y1KFR3   A0A224X6W2   A0A224X7Z3   A0A224XJI0   A0A2H8TF37   J9JS95   J9LFC9   A0A2J7PP17   A0A0J7K503   A0A2M4CV42   A0A2H8TKI9   A0A2S2P7B2   A0A0H3UA66   A0A2M4CV52   A0A2S2N814   J9LYS0   X1WQI9   A0A023EZE6   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   X1WQ25   X1X0M4   J9LBF1   A0A2A4IUM2   A0A2J7RE85   A0A224XIB0   A0A2J7PU96   A0A2S2NPG3   A0A1Y1MT28   A0A232ENU1   A0A2S2P3X8   J9M0H4   Q9NBX4   A0A2S2R9D4   A0A3S2NJ07   A0A224X746   A0A0V0G5B6   A0A2J7QB68   A0A2J7Q0S7   A0A142LX26   A0A2S2P698   J9KSK5  

EC Number

2.7.7.49

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    7753626    12537569    26812285    28648823    11405632    25527032   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    GALX01005299    JAB63167.1    KQ971729    KYB24751.1    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    ABLF02042385    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GGMR01015412    MBY28031.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GGMR01018716    MBY31335.1    GALX01005359    JAB63107.1    GGMR01016297    MBY28916.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02042518    ABLF02057746    GGMR01004661    MBY17280.1    GFTR01008262    JAW08164.1    GEBQ01004157    JAT35820.1    KK115285    KFM64681.1    GFTR01008279    JAW08147.1    GGMR01000226    MBY12845.1    GEDC01029594    JAS07704.1    KK119261    KFM75202.1    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    ABLF02024246    GFTR01008261    JAW08165.1    GFTR01008271    JAW08155.1    ABLF02040174    ABLF02040183    ABLF02055266    KK118005    KFM71947.1    NEVH01006736    PNF36716.1    ABLF02034467    ABLF02007779    ABLF02007782    ABLF02050375    GGMR01002322    MBY14941.1    GGMR01012443    MBY25062.1    KK113281    KFM59799.1    GGMR01016905    MBY29524.1    GGMR01006581    MBY19200.1    GFTR01008038    JAW08388.1    GFTR01008256    JAW08170.1    GFTR01008251    JAW08175.1    GGMR01013409    MBY26028.1    GEZM01084970    JAV60359.1    GGMR01003864    MBY16483.1    GGMS01002786    MBY71989.1    GGMS01002992    MBY72195.1    ABLF02041767    GEZM01053022    JAV74219.1    GGMS01006655    MBY75858.1    AY060438    AAL25477.1    GEZM01084969    JAV60363.1    GFTR01008260    JAW08166.1    GFTR01007929    JAW08497.1    GFTR01008257    JAW08169.1    GFXV01000908    MBW12713.1    ABLF02028535    ABLF02028545    ABLF02023911    NEVH01023280    PNF18085.1    LBMM01014024    KMQ85369.1    GGFL01005012    MBW69190.1    GFXV01002840    MBW14645.1    GGMR01012676    MBY25295.1    KF280391    AIE77315.1    GGFL01004957    MBW69135.1    GGMR01000676    MBY13295.1    ABLF02041861    ABLF02022418    GBBI01004571    JAC14141.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    ABLF02013806    ABLF02016612    ABLF02065839    ABLF02012739    ABLF02012741    NWSH01007753    PCG62823.1    NEVH01005277    PNF39135.1    GFTR01008246    JAW08180.1    NEVH01021205    PNF19912.1    GGMR01006408    MBY19027.1    GEZM01021881    JAV88842.1    NNAY01003095    OXU19992.1    GGMR01011511    MBY24130.1    ABLF02034460    AF237761    AAF81411.1    GGMS01017365    MBY86568.1    RSAL01000708    RVE41206.1    GFTR01008151    JAW08275.1    GECL01003538    JAP02586.1    NEVH01016302    PNF25823.1    NEVH01019963    PNF22185.1    KU543673    AMS38352.1    GGMR01012305    MBY24924.1    ABLF02014118    ABLF02014121    ABLF02054790   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000054359    UP000235965    + More
UP000036403    UP000218220    UP000215335    UP000283053   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q95SX7    Q9NBX4   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF04937   DUF659

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR037220   BED_dom       
IPR012337   RNaseH-like_sf       
IPR007021   DUF659       

SUPFAM

SSF56219   SSF56219        + More
SSF140996   SSF140996       
SSF53098   SSF53098       

Gene 3D

3.60.10.10    

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   V5GNJ2   K7IN67   A0A139WA11   A0A023EYS8   A0A2S2QEE0   X1WVL6   A0A1Y1K0C8   A0A2S2PEZ9   J9LC21   A0A2S2PPK8   V5GNF3   A0A2S2PJ52   X1WNI2   X1WLB2   A0A2S2NJB5   A0A224XB44   A0A1B6MIM7   A0A087THU2   A0A224X6Q4   A0A2S2N6Q7   A0A1B6C2V8   A0A087UCW3   X1WKS2   J9M522   A0A224X6T4   A0A224X6S1   J9KLB1   A0A087U3K8   A0A2J7R7D0   X1WZH0   J9MAC6   A0A2S2NCK2   A0A2S2P6S3   A0A087T3W0   A0A2S2PJG2   A0A2S2NPT6   A0A224XF24   A0A224XI99   A0A224X6U5   A0A2S2PA10   A0A1Y1KFT3   A0A2S2NH02   A0A2S2Q2R8   A0A2S2Q383   J9KPF1   A0A1Y1LKN6   A0A2S2QDN9   Q95SX7   A0A1Y1KFR3   A0A224X6W2   A0A224X7Z3   A0A224XJI0   A0A2H8TF37   J9JS95   J9LFC9   A0A2J7PP17   A0A0J7K503   A0A2M4CV42   A0A2H8TKI9   A0A2S2P7B2   A0A0H3UA66   A0A2M4CV52   A0A2S2N814   J9LYS0   X1WQI9   A0A023EZE6   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   X1WQ25   X1X0M4   J9LBF1   A0A2A4IUM2   A0A2J7RE85   A0A224XIB0   A0A2J7PU96   A0A2S2NPG3   A0A1Y1MT28   A0A232ENU1   A0A2S2P3X8   J9M0H4   Q9NBX4   A0A2S2R9D4   A0A3S2NJ07   A0A224X746   A0A0V0G5B6   A0A2J7QB68   A0A2J7Q0S7   A0A142LX26   A0A2S2P698   J9KSK5  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006313  

Length:

604

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

5.29205999999999

Exp number, first 60 AAs:

0.05473

Total prob of N-in:

0.03066

outside

1  -  604

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

83.240917

CSRT

0

Interpretation

Uncertain