Gene

KWMTBOMO08541

Pre Gene Modal

BGIBMGA009321

Annotation

PREDICTED:_probable_asparagine--tRNA_ligase?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr14(-):12490814-12493082      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.303 Mitochondrial   Reliability : 1.849

CDS

ATGTTGTGTACAAAATTAGAATTTAATAGGTTAAGGAGCTGTAGGCGCTATATTCAAATCAAAGGAATTACTAGAAAATATTGTGCTATTGCAGCTATCGTTGAAAAGTCGGATGTAGGAAGTATTACTGAAGTGAAGGGCTGGGTGAGAAATTTACGTGTCCAAAAAGAGTTTAGTTTTGCTGATATCAGTGATGGTTCGAGCGCGCAGAAATTGCAAATTATAATTCCGAAACATCTGAAAACAGAACAACTAACGTACGGTTCTTCAGTTAAAATTAAAGGAAAACTGTCTCTTAGTCCGCGAGGGCAACTGGAGATTTTAGCTAACGAAGTAAATGTTGTGGGACCTTGCGTCGTCTTAGACGGATATCCATTTAATCCTAGAACTGCACACCCGCCCGAATACACACGCCAATATCTACACTTACGTTCGAGAACGAATTACATATCGGCACTACTCAGAATACGAAGTGCTGTCGTCAAACACATACACGATTTTTTTAATTCAAGAAACTATATCAACATCCACACTCCGATCTTGACTTCAAATGATTGTGAAGGGGCAGGTGAAGTATTTAAAGTTCAACCAGACAACGAGGATACCATAAAAGCAATGATGCAAGAAGGAAAGGATAAAGATTCATTATATTTTGGATTGAAAACATTTCTAACAGTATCTGGTCAGTTGCATTTAGAAGCCATTTGCAGGGGAATGGGTAATGTGTACACACTCGGGCCAACATTTCGAGCAGAAAACTCAAGGTCTAGATTGCATCTCTCTGAGTTTTACATGTTAGAAGCAGAATTAGCATTCTGTGAGAACATTGTCCAGTTGCAAACAGTAATTGAGGAACTTTTAAAATATATATTCACGGAAACAAGAAATACAAATGAGAAAGATATATATTTGATTGATAAGGAAAATAAAAAACCAATTTGGTTGGACAAGCCATTTGTAACTTTGACTTATGATGAAGCTCAGCTTATTTTGAATACAAAGGGGTCTGGAACCGGAGGGGATTTTAATAAAGAACAAGAATTAATTTTGGTAGATCACTGTGGAGGTCCTGTATTTGTAACAAAATGGCCCAAAGACATGAAGTCGTTTTATATGAAAGAAAGCAACAATGACAGTAGTAAGGTTGATGCTTTAGATTTGTTAACACCAGTCACTGGTGAAGTAGTTGGAGGCAGTTTGCGTGAAGACAACTATGAAAAATTAAAACTAAAGCTACCTTCAGAACGACTGCATTGGTACTTAGAATTGCGGAAATTTGGTAACATACCCACAGGAGGATTTGGTTTGGGCTTAGAAAGATTACTACAAGTGCTTTGTGGTGTTAATAATATAAAAGACACACTTCCTTTCCCAAGATGGCCTCATAACTGTGACATGTGA

Protein

MLCTKLEFNRLRSCRRYIQIKGITRKYCAIAAIVEKSDVGSITEVKGWVRNLRVQKEFSFADISDGSSAQKLQIIIPKHLKTEQLTYGSSVKIKGKLSLSPRGQLEILANEVNVVGPCVVLDGYPFNPRTAHPPEYTRQYLHLRSRTNYISALLRIRSAVVKHIHDFFNSRNYINIHTPILTSNDCEGAGEVFKVQPDNEDTIKAMMQEGKDKDSLYFGLKTFLTVSGQLHLEAICRGMGNVYTLGPTFRAENSRSRLHLSEFYMLEAELAFCENIVQLQTVIEELLKYIFTETRNTNEKDIYLIDKENKKPIWLDKPFVTLTYDEAQLILNTKGSGTGGDFNKEQELILVDHCGGPVFVTKWPKDMKSFYMKESNNDSSKVDALDLLTPVTGEVVGGSLREDNYEKLKLKLPSERLHWYLELRKFGNIPTGGFGLGLERLLQVLCGVNNIKDTLPFPRWPHNCDM

Uniprot

H9JIH1   A0A2H1WTX8   A0A0L7KZM7   A0A0N1IGH0   A0A194Q750   A0A212FNC2   + More
A0A437BP75   D2A0S8   A0A067R1K2   A0A158NZL0   A0A2P8XV89   A0A154NZK7   A0A2A3ETE9   A0A0L7R8D8   F4WL34   A0A195CI67   A0A0M8ZWA7   A0A151J8X5   A0A026W8X4   A0A3L8D726   A0A088AUH7   A0A195FBI0   A0A232EW07   K7J673   A0A151WM00   A0A195B5D7   A0A1Y1LFX4   A0A1B6DHF1   B4LJC6   E2A438   E2BZI5   A0A0L0BNH6   A0A1B6IVP6   A0A1I8NPC9   B4JVZ4   A0A1Y1LC66   B4KTS7   B3NP36   B4MNG8   A0A1I8NA42   B4HMG0   Q7JZR5   B4P8J0   B4GC55   A0A1W4VBK2   A0A1A9UHG8   W8C1V4   Q290F1   A0A0K8U8V9   B4QII8   A0A182X9I1   A0A182FRN4   A0A182VK96   Q7PX87   A0A1A9Y4H8   D3TPS0   A0A1B0FC45   A0A2M4BNG9   A0A2R7WW59   A0A2M4BNM1   A0A182L8P4   A0A084W0M3   A0A0A1X6X3   A0A3B0J1J0   A0A0M4E3Q7   A0A2M4BM41   A0A182HKG4   A0A182U0I3   A0A182H4W9   A0A182GIN0   A0A0J7KTC3   A0A182K7S2   B3MD79   A0A182IK85   U4U7G8   J3JV90   A0A182PRQ9   W5J5H5   A0A182VVW1   A0A182MMD0   A0A182YBG9   J9JPE3   A0A1Q3F2S3   T1HG00   A0A1B0BDW9   Q16PG0   A0A182QKX2   A0A1J1I2J4   A0A182RA38   A0A0K8TSY2   A0A1B0CNZ0   A0A1A9WIH6   B0W2E8   A0A224XH19   A0A1L8DRI6   A0A023F1W9   A0A1B0DLQ8   A0A224YTG1   A0A146M7L8   A0A131YPK9  

Pubmed

19121390    26227816    26354079    22118469    18362917    19820115    + More
24845553    21347285    29403074    21719571    24508170    30249741    28648823    20075255    28004739    17994087    20798317    26108605    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    24495485    15632085    22936249    12364791    14747013    17210077    20353571    20966253    24438588    25830018    26483478    23537049    22516182    20920257    23761445    25244985    17510324    26369729    25474469    28797301    26823975    26830274   

EMBL

BABH01027222    ODYU01010995    SOQ56457.1    JTDY01004058    KOB68657.1    KQ460817    + More
KPJ12126.1    KQ459337    KPJ01372.1    AGBW02006209    OWR55235.1    RSAL01000024    RVE52217.1    KQ971338    EFA01641.1    KK852773    KDR16817.1    ADTU01004724    PYGN01001295    PSN35927.1    KQ434778    KZC04428.1    KZ288192    PBC34321.1    KQ414636    KOC67026.1    GL888207    EGI64997.1    KQ977720    KYN00426.1    KQ435850    KOX70869.1    KQ979471    KYN21424.1    KK107353    EZA52086.1    QOIP01000012    RLU16287.1    KQ981685    KYN37985.1    NNAY01001926    OXU22540.1    KQ982944    KYQ48848.1    KQ976587    KYM79723.1    GEZM01061449    JAV70476.1    GEDC01012182    JAS25116.1    CH940648    EDW60506.1    GL436526    EFN71804.1    GL451627    EFN78883.1    JRES01001601    KNC21566.1    GECU01016763    JAS90943.1    CH916375    EDV98132.1    GEZM01061452    JAV70471.1    CH933808    EDW10653.1    CH954179    EDV55675.1    CH963848    EDW73657.1    CH480816    EDW48228.1    AE013599    AY071089    AAF57921.1    AAL48711.1    CM000158    EDW92207.1    CH479181    EDW32398.1    GAMC01000758    JAC05798.1    CM000071    EAL25411.1    GDHF01029217    JAI23097.1    CM000362    CM002911    EDX07435.1    KMY94423.1    AAAB01008987    EAA01739.3    EZ423422    ADD19698.1    CCAG010005008    GGFJ01005403    MBW54544.1    KK855501    PTY22845.1    GGFJ01005400    MBW54541.1    ATLV01019123    KE525262    KFB43767.1    GBXI01007445    GBXI01007117    JAD06847.1    JAD07175.1    OUUW01000001    SPP74807.1    CP012524    ALC40528.1    GGFJ01004870    MBW54011.1    APCN01000828    JXUM01110467    KQ565415    KXJ71003.1    JXUM01066407    KQ562397    KXJ76006.1    LBMM01003414    KMQ93558.1    CH902619    EDV37412.1    KB631829    ERL86566.1    BT127157    AEE62119.1    ADMH02002066    ETN59712.1    AXCM01000480    ABLF02026358    GFDL01013180    JAV21865.1    ACPB03001452    JXJN01012713    CH477784    EAT36240.1    AXCN02001512    CVRI01000036    CRK93070.1    GDAI01000563    JAI17040.1    AJWK01021204    DS231826    EDS28694.1    GFTR01006102    JAW10324.1    GFDF01005011    JAV09073.1    GBBI01003379    JAC15333.1    AJVK01036612    GFPF01006128    MAA17274.1    GDHC01003597    JAQ15032.1    GEDV01007378    JAP81179.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000053268    UP000007151    UP000283053    + More
UP000007266    UP000027135    UP000005205    UP000245037    UP000076502    UP000242457    UP000053825    UP000007755    UP000078542    UP000053105    UP000078492    UP000053097    UP000279307    UP000005203    UP000078541    UP000215335    UP000002358    UP000075809    UP000078540    UP000008792    UP000000311    UP000008237    UP000037069    UP000095300    UP000001070    UP000009192    UP000008711    UP000007798    UP000095301    UP000001292    UP000000803    UP000002282    UP000008744    UP000192221    UP000078200    UP000001819    UP000000304    UP000076407    UP000069272    UP000075903    UP000007062    UP000092443    UP000092444    UP000075882    UP000030765    UP000268350    UP000092553    UP000075840    UP000075902    UP000069940    UP000249989    UP000036403    UP000075881    UP000007801    UP000075880    UP000030742    UP000075885    UP000000673    UP000075920    UP000075883    UP000076408    UP000007819    UP000015103    UP000092460    UP000008820    UP000075886    UP000183832    UP000075900    UP000092461    UP000091820    UP000002320    UP000092462   

PRIDE

H9JIH1    Q7JZR5   

Pfam

PF01336   tRNA_anti-codon        + More
PF00152   tRNA-synt_2
PF09110   HAND
PF00176   SNF2_N
PF13892   DBINO
PF09111   SLIDE

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR004364   aa-tRNA-synt_II       
IPR004365   NA-bd_OB_tRNA       
IPR002312   Asp/Asn-tRNA-synth_IIb       
IPR004522   Asn-tRNA-ligase       
IPR006195   aa-tRNA-synth_II       
IPR023865   Aliphatic_acid_kinase_CS       
IPR000330   SNF2_N       
IPR036306   ISWI_HAND-dom_sf       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR029915   ISWI_metazoa       
IPR015195   SLIDE       
IPR015194   ISWI_HAND-dom       
IPR001005   SANT/Myb       
IPR014001   Helicase_ATP-bd       
IPR020838   DBINO       
IPR001650   Helicase_C       
IPR017884   SANT_dom       
IPR009057   Homeobox-like_sf       

SUPFAM

SSF50249   SSF50249        + More
SSF101224   SSF101224       
SSF52540   SSF52540       
SSF46689   SSF46689       

Gene 3D

1.10.1040.30     3.40.50.10810    

CDD

cd00079  HELICc
cd00167  SANT

ProteinModelPortal

H9JIH1   A0A2H1WTX8   A0A0L7KZM7   A0A0N1IGH0   A0A194Q750   A0A212FNC2   + More
A0A437BP75   D2A0S8   A0A067R1K2   A0A158NZL0   A0A2P8XV89   A0A154NZK7   A0A2A3ETE9   A0A0L7R8D8   F4WL34   A0A195CI67   A0A0M8ZWA7   A0A151J8X5   A0A026W8X4   A0A3L8D726   A0A088AUH7   A0A195FBI0   A0A232EW07   K7J673   A0A151WM00   A0A195B5D7   A0A1Y1LFX4   A0A1B6DHF1   B4LJC6   E2A438   E2BZI5   A0A0L0BNH6   A0A1B6IVP6   A0A1I8NPC9   B4JVZ4   A0A1Y1LC66   B4KTS7   B3NP36   B4MNG8   A0A1I8NA42   B4HMG0   Q7JZR5   B4P8J0   B4GC55   A0A1W4VBK2   A0A1A9UHG8   W8C1V4   Q290F1   A0A0K8U8V9   B4QII8   A0A182X9I1   A0A182FRN4   A0A182VK96   Q7PX87   A0A1A9Y4H8   D3TPS0   A0A1B0FC45   A0A2M4BNG9   A0A2R7WW59   A0A2M4BNM1   A0A182L8P4   A0A084W0M3   A0A0A1X6X3   A0A3B0J1J0   A0A0M4E3Q7   A0A2M4BM41   A0A182HKG4   A0A182U0I3   A0A182H4W9   A0A182GIN0   A0A0J7KTC3   A0A182K7S2   B3MD79   A0A182IK85   U4U7G8   J3JV90   A0A182PRQ9   W5J5H5   A0A182VVW1   A0A182MMD0   A0A182YBG9   J9JPE3   A0A1Q3F2S3   T1HG00   A0A1B0BDW9   Q16PG0   A0A182QKX2   A0A1J1I2J4   A0A182RA38   A0A0K8TSY2   A0A1B0CNZ0   A0A1A9WIH6   B0W2E8   A0A224XH19   A0A1L8DRI6   A0A023F1W9   A0A1B0DLQ8   A0A224YTG1   A0A146M7L8   A0A131YPK9  

PDB

1X56     E-value=3.57283e-54,     Score=536

KEGG

101739579    K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22] | (RefSeq) probable asparagine--tRNA ligase, mitoch

PATHWAY

00970    Aminoacyl-tRNA biosynthesis - Bombyx mori (domestic silkworm)

GO

GO:0005524   GO:0004816   GO:0006421   GO:0003676   GO:0006418   GO:0004812   GO:0016301   GO:0016774   GO:0005739   GO:0003677   GO:0031491   GO:0016887   GO:0043044   GO:0016589   GO:0000166   GO:0005737   GO:0016876   GO:0043039  

PANTHER

PTHR10799:SF819  

Subcellular location

Nucleus  

Length:

466

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02026

Exp number, first 60 AAs:

0.00098

Total prob of N-in:

0.00475

outside

1  -  466

 

 

Pi

71.7749

Theta

133.884665

Tajima's D

-0.676471

CLR

112.954747

CSRT

0.206939653017349

Interpretation

Uncertain