Silkworm Genome Informatics Database

Gene

KWMTBOMO08540 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009372

Annotation

PREDICTED:_pre-mRNA_cleavage_complex_2_protein_Pcf11-like_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr14(+):12469523-12489246 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.283

CDS

ATGCTCACAATTCTTGCGGAAGAGAATATCGAACACGCTGGGGTTATCGTTGAAACCGTGGAAAAGCATTTGGAGAAGGTGCATCCCGATATCAAGTTGCCAGTTCTGTATTTAGTTGATTCAATTATCAAGAATGTTGGCGGAGCCTACACACAAAAATTCTCACAGAGTATCGTCAACATGTTTACAAGGACTTTTAAGCAGGTTGATGAGAAAATACGGTCACAAATGTTCAAACTTCGTGAGACTTGGCACGATGTGTTCCCAGCGACGAAGCTGTACCAGCTAGATGTCAAAGTCAACCTCATTGATCCAGCATGGCCGATACAGGCCCAACCCCAGCAATCAAACATCCATCCACCGGCTTCCACACCGGTGTTGACTGACGAAGAACGAACCATCATCGCTAAGAAAGAGCAGGAGCTGCTCATGCTACAAAAGAAAAAGATTGAGTTGGAATTGGAGCAGACACGGAAGCAGCTTGAGGTAGCTGAGAAGAATGCTAAAAAGGTGGTGACAGCAGTCCCTCCCGTGGTGGCCGCAGCGACTGCGCCCGTCGCCCCCGCCGCGACTCCGCTGGTCTCCGTCGCTGCGCCAGAGGTCACCCCTGTACCTGTCAGACAGAGGCTCGGACCGCCAATAAACAAAACGGGCAGTCGGATAGCGCCCGTGAGCGCGGGGCTGGCCGCCATGCGCCGCGACCCCCGCTTGGCGCGCGCGCCCGCCCCCGCGCGCCCCGCCCCGCCCGCCGCGCCGCCCGCCATCGCCCCGCACGTGTTCGACATCAAGCCGCTCGACCGCGTCACCAAGCGGAAGAACGTCATCACCATCGACGTGCGCTGCCCGGCGCCCGCGCCCCGGCCCTCGCCCCGCCGGGACCCTCGCCTGCACAAGCGCGGGGGCAAGGCGCCGGCGCCCAACGCGGACGGCTACGTCGACGCCTTGCCCGACCCTAAAAAGATCAGCAAGCTCCCGCCCATACCAAAGATAGTCCGGGAGGCGCCCTCCTCGAATAAAAAGCGGAAAGATTCCCGCGAGAAAAAGAAAAAGAGGGACGACGGCAAGGAGAGCTCGAGCGGCTCGTCGCCGGACAAGCGGCTGCGCGCCAAGAACGGGAACAAGGCCCAGAAGAAGAAGGAGCCGGACGCGCCCGTGGCCTTCAAGGAGCTCAAGAACTATGTGAAGGGGCGGTACATGCGCCGCAACAAGGAGCCCTCCGAGAGCCCGGAGAGGCCCGAGGCCGCCGCATCAAGTGTGCCCGACGTGGTCGTAGAGAATAAAGACATCGATCTCAGGGTGCTCCCGCCCGCCAGCGAGCCGCCGCCCGCGCCCGTCGCCCTCAAGAGGTCCTCCACTGAAACGCTCGAACCAAAACCTAAAAGGAACAAACTTGACAAATTTGATATTCTCTTCGGCAATGAAGATGTTGATCTCCGGAAGCTGCCACAAGTTGAAGAAATTCTCCCAGTGGCTCCGCTATCACCGAAACACAATGACGAGTCTCAAGAGAGTGGACCCGACAAGGTCGTTTCCCCTCACGACTCTCCCAAACAAAAAGACTGGAATGAAGTCAAGGAGAAAACTGAAAAGAAGGCTCCATCCAAGTTAGATTTGGTGCGAGCCAAGCTTGCAGAGGCCACTAAAGGCAAGGACAGACTGGGCAGACCTTTACTCTTCAGTAAGTCGCCAAGTATTGAAAGAGAACGGAAGCGTACCTTAAGTTCTGAGGACACTGACCTTAGAAACGAAAATTCCGACGAGTACGACACCGAAGACCACAAGAAGACAATTTCCATCATAATGTCGCAGGCCAAGGAGCAGTACAGCGACGGGCAGATCGACAAGAACCAGTACAACACGCTCGTCTGTCAGGTTCTGCAGCTGAACGAGAAACTGAAGTTGAAAGAGGCGAAACAGAGAGAGTCTCTCGAAGTTTCTAAAAGGAGACTCAACGCGCACATACTCGAAGATAGCTTCAAGGTCGCGTCCCCGAAGTCGTCGCCCGGCGAGAACAACTACGGCGACATCGACGAGCGGGTCCCGCCCACCGCCTACCTCGACGCCCTGCACAACGGCAACGAGCTCAGGCAGGACTCCGACATGCGCGCCGGACCCGCCGACCAGACCGACGGACACAAGGCCAAGGGGCTGTTACCCAGGCCGCCGATGATGCCCATGTTCGGACCCTTCCCTCCCATGTGGAGGGGACAGCCTCACCCCCGGATGGACGAGTACGGCCCCAGGAGGTTCCGAGGGCCGATGCCATTCTTTAGGGGGAAATTCGATAACAGACTCATGAGACCGCCCTTCGACCCACGGATGACCGTGCCTTTGCCGACCCCGAAGCTTGGTATCTGTCAAGGGGAGAGCCCGCTCGAGCCCTACGTGAGGAGCGAGTCTCCCCCTCCCCTGGGAGCTCCTGGGTTCGTTATCCCGCCGACTGACTACCGAATCTTGGAGTACATCGAGCAAGATCCCGTGAAGACCATACAGATAGACGGCGTGCCGCGCGAGATACGGTTCTACGGCGACACGGCGGTCATCATGCTGGACTGGGACGACCCCAGGGAGATCAAGTTCTTGCCTGGCTCGAGACGCGTCACGTTCGACAACAAAGACTCGGTGGTCCTCTCGTTCAACGAAGAGAGCAGACAAATAGAAATAGACGACCAAGTGTTCGATATAAAGTTCGGGGCTCCCACCCGGGAGCTGTGCATCAACGGGCGGTGGTACGAGTGCTTCTTCGGAGGCCAGCCCGTGGGCGTGCTCATCGACGGGCGGCCCCGGCTGGTGCAGCTGGAGGGCCCGCTGCCGCAGGTGGACATCGGCAAGGCGAAGCGGACGGAGCTGGTGGCCGGCAAGATCAACCTCATAGTGAACGCGACGCAGATGTGCCCCGTGTACCTGGACGCTAAAGTGCAGAAGTTTACAATAAACGGACAGTTCTTTACTATCAGATTTGTTGATTCTTTGAAAACTGTTTTAATAAACGAGCAGCCATTTAAAGTTGAGTTTGGTGATTTACCCAAGCCCATAAGTATAGGGAACGAAAAGTTCTTCATAAGATTCTCGGCTTTACCCAGAAACGTAAAGCCGGGCTATATACAGATAGCTAACATGGAAGGAGTCACGCTGCCCAGCATGACGGCGGCGCCCGCGGGCCGCAGCGTGCCGCAGCCCATGGACACCGACCAGGAGCCCGACAGAGCCGTCAAGACTCCTAGCCCGGATATCAATAATGAAAATCAAGGTCTAGAAATGTTGGCCAGCGTGATGCCTTCGAGCATAGTGCCGGCGTCCGCGTCCGAATACAGCGTGGCCGAACCCTTATTCGGGAAGACCGACATGATCCCGGGCCTCGACACTCCGGCCGACGAGAAGCCGAAGCCGACTCTACCGATCCTCGACAACATCAACGTTAACGATTTGTTCGCGAAGCTGGTGGCGACCGGCATCGTCCAAGTGCAGAACGACAGCGCTAAAGACCTGAAGATTGAAACTAAAGTCGAGGAGAAGATAAAACCGAAGGAAGACAAAGACGTCACGCACAAAGTTGATCTCTTGAAACCGGAGACGTTAAGGAGCAAGCAGGGCGGCGTGGTGCGGCGGCTGTACGGCGGCATGCAGTGCTCGGGGTGCGGCGCGCGCTTCCCGCCGGAGCACACGGTGCGCTACTCGCAGCACCTCGACTGGCACTTCCGCCAGAACCGACGCGACCGGGACTCCGCCAGGCGCGCGCACAGCCGCCACTGGCACTACGACCTCTCCGACTGGCTGCAGTACGAGGAGATCGATGAGCTCGACGACAGAGAAAAGAATTGGTTCGAGAGCGCGGGTAGCGAGGGCGGCGAGGCGGGCGGCGCGGGGGCGGCGGGCGCGGGCGCGGGGGGCGCGGAGGAGAGCAGCGCGGCGGGCGCGCGGCCGCGGTGCGCGCTGTGCGGGGACGCCTTCCACATGTTCTACAACCACGACAAGGACGAGTGGCAGCTGCGGAACTCCGTGCGCCACCACGACGACAACTACCACCCCTCCTGCTTTGAGGACTACAAGGCCTCTCTGGCTAAAGAAGAAGAGAAAGAGAAAGTTGAAGAAACCGCCCCAGAAAAAGTAGAAGAAGACAACGAACCGATAGAGATCAAGGACTTCGACGACACGCTCGACCAGTCCGACAACGAGTCGGTAGTAGAAGTCATTGAACCCCCCGTCGAGATACCAGAGCCTCTATTGATTGACGAAGGAGATGAAGACGATGTGGTGCTGAAGGCCGAGCCGATAGTGCAAGTGGAGGTGCAGGACGACGACGACACGGACGACGAGACGGTCGCGCACCGCGCCGAGCGGGACAGGCTCGCCCGCATCGACTTCTCCAACGTCAAGGTCAAGCAGGAGCCCCTCGACCCAGATGATGAACCAATAATAACGGCTGAAGAAGAATCAATTCCAGCACCTTCTGTTGACATGATCCAACCCACCGTCCACACGTCAATTGATGGAAACGTTCAACTGGAAGCACCCGCAGTGGCTCACGCTATCCCCCTGAACACAATTCGCATCAACATCTCTAAATCTTTGCCATTAACTCAGCTCCCAGTTTCAAACAATGGTCTCGAAGACATCAGTGCTGATGATGAGCCTCTACCTCCTGGTGAGGAGGTGGAGTTGGAATATACTTTGAAACCAACCTTGGAAGGCATTAAGTTCAGCAGACAACCCCCAGTCCAGAAAGGCAATGAGCTATCAGGACTCTGCTCCATAATGTGA

Protein

MLTILAEENIEHAGVIVETVEKHLEKVHPDIKLPVLYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVDEKIRSQMFKLRETWHDVFPATKLYQLDVKVNLIDPAWPIQAQPQQSNIHPPASTPVLTDEERTIIAKKEQELLMLQKKKIELELEQTRKQLEVAEKNAKKVVTAVPPVVAAATAPVAPAATPLVSVAAPEVTPVPVRQRLGPPINKTGSRIAPVSAGLAAMRRDPRLARAPAPARPAPPAAPPAIAPHVFDIKPLDRVTKRKNVITIDVRCPAPAPRPSPRRDPRLHKRGGKAPAPNADGYVDALPDPKKISKLPPIPKIVREAPSSNKKRKDSREKKKKRDDGKESSSGSSPDKRLRAKNGNKAQKKKEPDAPVAFKELKNYVKGRYMRRNKEPSESPERPEAAASSVPDVVVENKDIDLRVLPPASEPPPAPVALKRSSTETLEPKPKRNKLDKFDILFGNEDVDLRKLPQVEEILPVAPLSPKHNDESQESGPDKVVSPHDSPKQKDWNEVKEKTEKKAPSKLDLVRAKLAEATKGKDRLGRPLLFSKSPSIERERKRTLSSEDTDLRNENSDEYDTEDHKKTISIIMSQAKEQYSDGQIDKNQYNTLVCQVLQLNEKLKLKEAKQRESLEVSKRRLNAHILEDSFKVASPKSSPGENNYGDIDERVPPTAYLDALHNGNELRQDSDMRAGPADQTDGHKAKGLLPRPPMMPMFGPFPPMWRGQPHPRMDEYGPRRFRGPMPFFRGKFDNRLMRPPFDPRMTVPLPTPKLGICQGESPLEPYVRSESPPPLGAPGFVIPPTDYRILEYIEQDPVKTIQIDGVPREIRFYGDTAVIMLDWDDPREIKFLPGSRRVTFDNKDSVVLSFNEESRQIEIDDQVFDIKFGAPTRELCINGRWYECFFGGQPVGVLIDGRPRLVQLEGPLPQVDIGKAKRTELVAGKINLIVNATQMCPVYLDAKVQKFTINGQFFTIRFVDSLKTVLINEQPFKVEFGDLPKPISIGNEKFFIRFSALPRNVKPGYIQIANMEGVTLPSMTAAPAGRSVPQPMDTDQEPDRAVKTPSPDINNENQGLEMLASVMPSSIVPASASEYSVAEPLFGKTDMIPGLDTPADEKPKPTLPILDNINVNDLFAKLVATGIVQVQNDSAKDLKIETKVEEKIKPKEDKDVTHKVDLLKPETLRSKQGGVVRRLYGGMQCSGCGARFPPEHTVRYSQHLDWHFRQNRRDRDSARRAHSRHWHYDLSDWLQYEEIDELDDREKNWFESAGSEGGEAGGAGAAGAGAGGAEESSAAGARPRCALCGDAFHMFYNHDKDEWQLRNSVRHHDDNYHPSCFEDYKASLAKEEEKEKVEETAPEKVEEDNEPIEIKDFDDTLDQSDNESVVEVIEPPVEIPEPLLIDEGDEDDVVLKAEPIVQVEVQDDDDTDDETVAHRAERDRLARIDFSNVKVKQEPLDPDDEPIITAEEESIPAPSVDMIQPTVHTSIDGNVQLEAPAVAHAIPLNTIRINISKSLPLTQLPVSNNGLEDISADDEPLPPGEEVELEYTLKPTLEGIKFSRQPPVQKGNELSGLCSIM

Uniprot

H9JIM2 A0A2H1WU06 A0A194Q767 A0A3S2NMV0 A0A0N1IEZ4 A0A212FNA6 + More
A0A0L7KZJ5

Pubmed

19121390 26354079 22118469 26227816

EMBL

BABH01027221 ODYU01010995 SOQ56456.1 KQ459337 KPJ01373.1 RSAL01000232 + More
RVE43824.1 KQ460817 KPJ12127.1 AGBW02006209 OWR55236.1 JTDY01004058 KOB68658.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000053240 UP000007151 UP000037510 + More

PRIDE

H9JIM2

Pfam

PF04818 CTD_bind

Interpro

IPR006569   CID_dom        + More
IPR006903   RNA_pol_II-bd
IPR008942   ENTH_VHS
IPR002014   VHS_dom

SUPFAM

SSF48464 SSF48464

Gene 3D

1.25.40.90

CDD

cd03562 CID

ProteinModelPortal

H9JIM2 A0A2H1WU06 A0A194Q767 A0A3S2NMV0 A0A0N1IEZ4 A0A212FNA6 + More
A0A0L7KZJ5

PDB

1SZA E-value=1.49657e-11, Score=173

KEGG

101744068 K14400 pre-mRNA cleavage complex 2 protein Pcf11 | (RefSeq) pre-mRNA cleavage complex 2 protein Pcf1

PATHWAY

03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0005623 GO:0006886 GO:0016491 GO:0004616 GO:0032008 GO:0032439 GO:0042632 GO:0043410 GO:0045121 GO:0016876 GO:0043039

Length:

1586

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01855

Exp number, first 60 AAs:

0.00176

Total prob of N-in:

0.00085

outside

1 - 1586

Pi

223.578181

Theta

171.475118

Tajima's D

0.082516

CLR

1.222185

CSRT

0.396030198490075

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics