Gene

KWMTBOMO08518

Pre Gene Modal

BGIBMGA009335

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_24-like_[Bombyx_mori]

Location

Bomo_Chr14(-):11556076-11559111      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.244

CDS

ATGAGTATGCGCGTGGCCTGGGTCAGATGGTATTGGGTTGTGATACTTACCACGTGCGCCGCGAGGACCGCCAGCGATTGGCTCGACTGTTCTCACATCGCCACATGCAAATGCAAATGGTCCTCCGGAAAGAAGACAGCCACCTGTGTCTCCGGTGACCTGCGCCGTCCGCCCACACTCTCTTCGGATATACAAGTACTAGATCTACACGACAACCCATTACGGAGCTTACCCCAAGAAGTGTTTTCGAATATTGGCCTTCTAAACTTACAACGATTGAATCTACGAGCAACGAGTCTCAGATCTTTACACGCGGACGCGTTCTTAGAATTAAGGATACTAATTGAAGTCGATTTAGGAGACAACGACCTAGCTCACTTGCCAAAAGACATATTCAGAGGCAACGAACGATTGAGGCTGGTCGTTCTGAGCAATAATCCTTTAACGACGTTAATTGCGGACCAGTTCCCGCCGCTTCCTCATTTACGGATCCTTTTATTAGACGGATGCAGATTAAGATCGATACACACGAATGCCTTGCGCAATTTGAAGTCGTTAGAGACAATAGATTTGCGTAGAAATCAACTATCATTCCTCCGGTTGATTACGTTTTCATTGCCGGCTCTAAAGACTGTTGCCCTCTCTGGGAATCCGTGGAAATGTGATTGTAGGCTACGCGAGTTTAAAGACTGGTTCTTGGAAAGTAATCTAGGAACCGAGGAACTGTTCTGTGTTGAGCCTTTGAAGCAAACTGGATCAAAGTGGCGTCAAGTGCCTAGTGAAAATATGTCGTGTCCCCCTGAAGTAAAGTCTAGTACATTAATAGTAAGAGCGGAGGTTGGTATGGCTGCTTCTTTTGGCTGTTGGGTTCACGGACTGCCAAAACCAAAAGTGACATGGTTATTTGATGGTGTAGATGTGCACAACAGTTCTATCGATTGCGACATGGAAGAGATAGAAACGGTCATAGAAGAAGACTCGGAAGAAAGAGTTCCGGGAAGTGTAAGATGGGTAAATATAACCCTCTTGAATGTAACGTCGAATGCAGCAGGAGAATGGACATGTGTGGCAAAAAGTATAGCTGGTGATGCAAGAGCGATTATTAGTCTAGTACTTCCGAGATCACAAACAGCAACGGCAAGAACCGCTCCGGGGATTCCTCAACTGTTAGGAGTAGTTTTTGGTGCATTGAGTATTTTAGCTACCCTCGGTTTTATAGGTGCTGTTGCGTGCTGGAAGTTAAGACGACGAAGCGTACCGCCAAGTCGAAGTTTCACGGACCAAGAGAAAAGACTTATAGACGCGTCTGTTGTAGTCAGTTGTGATAGATCTATCGGTAATATGGCTTCTCCTTGCGATTTTGAACTAACGGAACAATCTTTAGGGGACGACCAGCCAAGAACGTGTTCGTTTGATCCGGTTCATATAACAATAGAAGGTACCCCTGGTGCATTTCCACCACCGCCCGCTGAGTTTGCAGTGCCGGTGCCTTATGGAAACATCTTCATATCGGTTCAAGTTTCTGGCAGAGGTGAATCAGGAAAGTATCCAGATTTATTGAGTGGTGGAGCAACTTTACCGAGACGGAACAGATCCTGCTGTGGAGCTCCAGCTTACGATAACATGGGTCCAAGAGTGACTGCCACCGGAAGCTCGACTTGGTCTTTGCCGGGTGCCAATTTAGAGCACGTAGAACTATCAGAAACTCCTGTTTTAACACTCCCTCCTCCTCCACCAGAGTTTGTTTCACTTTAG

Protein

MSMRVAWVRWYWVVILTTCAARTASDWLDCSHIATCKCKWSSGKKTATCVSGDLRRPPTLSSDIQVLDLHDNPLRSLPQEVFSNIGLLNLQRLNLRATSLRSLHADAFLELRILIEVDLGDNDLAHLPKDIFRGNERLRLVVLSNNPLTTLIADQFPPLPHLRILLLDGCRLRSIHTNALRNLKSLETIDLRRNQLSFLRLITFSLPALKTVALSGNPWKCDCRLREFKDWFLESNLGTEELFCVEPLKQTGSKWRQVPSENMSCPPEVKSSTLIVRAEVGMAASFGCWVHGLPKPKVTWLFDGVDVHNSSIDCDMEEIETVIEEDSEERVPGSVRWVNITLLNVTSNAAGEWTCVAKSIAGDARAIISLVLPRSQTATARTAPGIPQLLGVVFGALSILATLGFIGAVACWKLRRRSVPPSRSFTDQEKRLIDASVVVSCDRSIGNMASPCDFELTEQSLGDDQPRTCSFDPVHITIEGTPGAFPPPPAEFAVPVPYGNIFISVQVSGRGESGKYPDLLSGGATLPRRNRSCCGAPAYDNMGPRVTATGSSTWSLPGANLEHVELSETPVLTLPPPPPEFVSL

Uniprot

A0A2W1BLB4   A0A2A4K9Z8   A0A0L7LA24   A0A194Q786   A0A0N0PB35   A0A2H1VLJ7   + More
A0A212F4S8   A0A2A4K9T7   A0A2W1BFD8   A0A0L7LFL0   H9JII6   A0A194RJN9   A0A194Q8V2   D1ZZM3   A0A1W4XGW3   A0A1S3D2D1   A0A2R7WTA1   N6TG30   U4UPJ5   N6TSK3   A0A067QTN0   A0A0T6B3T3   A0A2J7PG78   T1ID69   J9K4B7   A0A2S2PTV6   A0A2H8TNW6   A0A2S2R7J8   E0VGJ7   A0A0C9Q5G2   A0A2A3EUI0   A0A087ZUM4   A0A2P8ZPB5   A0A0L7R398   A0A0M9A4K9   A0A154P804   E2AYH5   A0A310SE10   A0A1B0D6N8   A0A195F2V7   E2BYJ8   A0A151XJA2   A0A158P037   F4X3R4   A0A0J7P084   A0A182GJN4   A0A026WRW2   W8BGG8   B0XEQ6   A0A182K5Q4   Q17L59   A0A182XDU1   A0A182XXT8   A0A182U583   A0A1A9W199   Q7QFF0   A0A2C9GPR6   A0A182UXE7   A0A1A9YQB6   A0A1B0BLI9   A0A0K8V7H5   A0A182RMX3   A0A182IN95   A0A182W5H6   A0A1A9ULQ3   A0A182MWI9   A0A1B0A1F8   A0A182SGP7   A0A1B0FI23   A0A084VX68   A0A182Q5P7   A0A1I8MGN2   A0A1J1IQ56   A0A1I8Q759   A0A0L0C883   K7ISF4   A0A195E055   A0A182PBJ1   A0A195CQZ4   A0A336M660   A0A336LE96   A0A195BGP3   A0A182N194   W5JRT2   A0A182FJ78   B4M0Y9   A0A0M3QXI3   B3P521   B4QSP5   B4PNF9   B4N8S2   B4IJ14   A0A0B4KHL5   Q9V9V6   B4KCH7   Q297R4   B4G2X2  

Pubmed

28756777    26227816    26354079    22118469    19121390    18362917    + More
19820115    23537049    24845553    20566863    29403074    20798317    21347285    21719571    26483478    24508170    30249741    24495485    17510324    25244985    12364791    14747013    17210077    24438588    25315136    26108605    20075255    20920257    23761445    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085   

EMBL

KZ150185    PZC72463.1    NWSH01000018    PCG80734.1    JTDY01002017    KOB72317.1    + More
KQ459337    KPJ01393.1    KQ461056    KPJ09928.1    ODYU01003222    SOQ41688.1    AGBW02010318    OWR48741.1    PCG80735.1    PCG80736.1    PZC72465.1    JTDY01001333    KOB74165.1    BABH01027129    KQ460297    KPJ16161.1    KPJ01395.1    KQ971338    EFA02390.1    KK855489    PTY22793.1    APGK01029141    KB740725    ENN79349.1    KB632308    ERL91945.1    APGK01002864    KB734997    ENN83469.1    KK853033    KDR12250.1    LJIG01016129    KRT81527.1    NEVH01025635    PNF15333.1    ACPB03002840    ABLF02041079    GGMR01020196    MBY32815.1    GFXV01003369    GFXV01003806    GFXV01007561    MBW15174.1    MBW15611.1    MBW19366.1    GGMS01016735    MBY85938.1    DS235147    EEB12503.1    GBYB01009278    JAG79045.1    KZ288185    PBC34866.1    PYGN01000004    PSN58346.1    KQ414663    KOC65309.1    KQ435758    KOX75823.1    KQ434839    KZC08055.1    GL443910    EFN61510.1    KQ768090    OAD53216.1    AJVK01012101    KQ981856    KYN34512.1    GL451483    EFN79232.1    KQ982074    KYQ60492.1    ADTU01005290    GL888624    EGI58861.1    LBMM01000566    KMQ98050.1    JXUM01068626    KQ562510    KXJ75749.1    KK107139    QOIP01000003    EZA57844.1    RLU24780.1    GAMC01008713    JAB97842.1    DS232855    EDS26165.1    CH477218    EAT47436.1    AAAB01008846    EAA06629.5    APCN01001309    JXJN01016400    GDHF01017749    GDHF01011331    JAI34565.1    JAI40983.1    AXCM01009331    CCAG010018193    ATLV01017851    KE525195    KFB42562.1    AXCN02001237    CVRI01000057    CRL02373.1    JRES01000755    KNC28648.1    KQ979955    KYN18481.1    KQ977394    KYN03065.1    UFQT01000589    SSX25520.1    UFQS01004090    UFQT01004090    SSX16168.1    SSX35494.1    KQ976490    KYM83344.1    ADMH02000610    ETN65635.1    CH940650    EDW67400.2    CP012526    ALC45973.1    CH954182    EDV52935.1    CM000364    EDX15142.1    CM000160    EDW99241.2    CH964232    EDW81523.2    CH480846    EDW50967.1    AE014297    AGB96529.1    BT100194    AAF57176.1    ACY40028.1    CH933806    EDW14796.2    CM000070    EAL28141.4    CH479179    EDW24167.1   

Proteomes

UP000218220    UP000037510    UP000053268    UP000053240    UP000007151    UP000005204    + More
UP000007266    UP000192223    UP000079169    UP000019118    UP000030742    UP000027135    UP000235965    UP000015103    UP000007819    UP000009046    UP000242457    UP000005203    UP000245037    UP000053825    UP000053105    UP000076502    UP000000311    UP000092462    UP000078541    UP000008237    UP000075809    UP000005205    UP000007755    UP000036403    UP000069940    UP000249989    UP000053097    UP000279307    UP000002320    UP000075881    UP000008820    UP000076407    UP000076408    UP000075902    UP000091820    UP000007062    UP000075840    UP000075903    UP000092443    UP000092460    UP000075900    UP000075880    UP000075920    UP000078200    UP000075883    UP000092445    UP000075901    UP000092444    UP000030765    UP000075886    UP000095301    UP000183832    UP000095300    UP000037069    UP000002358    UP000078492    UP000075885    UP000078542    UP000078540    UP000075884    UP000000673    UP000069272    UP000008792    UP000092553    UP000008711    UP000000304    UP000002282    UP000007798    UP000001292    UP000000803    UP000009192    UP000001819    UP000008744   

PRIDE

H9JII6    Q9V9V6   

Pfam

PF13855   LRR_8        + More
PF07679   I-set
PF00560   LRR_1
PF02770   Acyl-CoA_dh_M
PF00441   Acyl-CoA_dh_1

Interpro

IPR032675   LRR_dom_sf        + More
IPR000483   Cys-rich_flank_reg_C       
IPR007110   Ig-like_dom       
IPR013783   Ig-like_fold       
IPR036179   Ig-like_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR013098   Ig_I-set       
IPR003599   Ig_sub       
IPR003598   Ig_sub2       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR036250   AcylCo_DH-like_C       
IPR037069   AcylCoA_DH/ox_N_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF47203   SSF47203       
SSF56645   SSF56645       

Gene 3D

2.60.40.10     3.80.10.10     1.10.540.10    

ProteinModelPortal

A0A2W1BLB4   A0A2A4K9Z8   A0A0L7LA24   A0A194Q786   A0A0N0PB35   A0A2H1VLJ7   + More
A0A212F4S8   A0A2A4K9T7   A0A2W1BFD8   A0A0L7LFL0   H9JII6   A0A194RJN9   A0A194Q8V2   D1ZZM3   A0A1W4XGW3   A0A1S3D2D1   A0A2R7WTA1   N6TG30   U4UPJ5   N6TSK3   A0A067QTN0   A0A0T6B3T3   A0A2J7PG78   T1ID69   J9K4B7   A0A2S2PTV6   A0A2H8TNW6   A0A2S2R7J8   E0VGJ7   A0A0C9Q5G2   A0A2A3EUI0   A0A087ZUM4   A0A2P8ZPB5   A0A0L7R398   A0A0M9A4K9   A0A154P804   E2AYH5   A0A310SE10   A0A1B0D6N8   A0A195F2V7   E2BYJ8   A0A151XJA2   A0A158P037   F4X3R4   A0A0J7P084   A0A182GJN4   A0A026WRW2   W8BGG8   B0XEQ6   A0A182K5Q4   Q17L59   A0A182XDU1   A0A182XXT8   A0A182U583   A0A1A9W199   Q7QFF0   A0A2C9GPR6   A0A182UXE7   A0A1A9YQB6   A0A1B0BLI9   A0A0K8V7H5   A0A182RMX3   A0A182IN95   A0A182W5H6   A0A1A9ULQ3   A0A182MWI9   A0A1B0A1F8   A0A182SGP7   A0A1B0FI23   A0A084VX68   A0A182Q5P7   A0A1I8MGN2   A0A1J1IQ56   A0A1I8Q759   A0A0L0C883   K7ISF4   A0A195E055   A0A182PBJ1   A0A195CQZ4   A0A336M660   A0A336LE96   A0A195BGP3   A0A182N194   W5JRT2   A0A182FJ78   B4M0Y9   A0A0M3QXI3   B3P521   B4QSP5   B4PNF9   B4N8S2   B4IJ14   A0A0B4KHL5   Q9V9V6   B4KCH7   Q297R4   B4G2X2  

PDB

4P91     E-value=6.32493e-19,     Score=233

KEGG

101742773    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 24-like

GO

GO:0016021   GO:0050660   GO:0016627   GO:0005030   GO:0043121   GO:0048167   GO:0061174   GO:0005887   GO:0030424   GO:0005515   GO:0007264   GO:0006413   GO:0005760   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

SignalP

Position:   1 - 23,         Likelihood:  0.975812

 

 

Length:

584

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

25.11503

Exp number, first 60 AAs:

2.81002

Total prob of N-in:

0.25089

outside

1  -  389

TMhelix

390  -  412

inside

413  -  584

 

 

Pi

286.427273

Theta

239.204728

Tajima's D

0.883493

CLR

0

CSRT

0.621218939053047

Interpretation

Uncertain