Gene

KWMTBOMO08515  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009336

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_24-like_[Amyelois_transitella]

Location

Bomo_Chr14(-):11406621-11429571      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.473

CDS

ATGGGCATTCGAGTATGCGTTATTTGGTTGCTTGTGCTCATGACCATCGCCCCGACCGGAAGCGATTGGCTGACCTGTGGCAACATACCAGGATGCAACTGCAAATGGTCCTCGGGAAAGAAAACGGCATCATGCTCCTCGCTGGGATTAAAAACACCTCCAGAATTGGAATCGGACATTCAAGTTCTTGACTTGCACGGGAATCCACTCGAAACATTAGGAAAAGATGCTTTCCTGAGAGTGAATATGATAAACCTACAAAAGGTCAATCTGAGCTCGACATGTTTACGGACACTGCATTCAAACGCATTCAATCACCTTCGGATATTAATTGAATTAGATCTATCCCAGAACGAACTGACTCAGCTATCCCCTGACCTATTCAAGGCCACAGAACGTTTGAGAGTCCTAATACTTAACGATAACCCTCTAACGACGCTCGTCGCCGAGCAATTTCCTCCGTTGAGATATTTGAAGAAACTTGAAATTTCACGTTGTAAACTTCGCTCAGTGAGCTCGTTCGCTTTCACGAATTTAAGAGCATTGGAATCGGTCAATATCCAACAAAATTATCTAACGCACCTGCATCAAAGTACTTTCAATCTACCCCTCATGAATACTCTCTCCCTGTCGGATAATCCTTGGTATTGTGATTGTGGACTGCGCGAATTCCACGACTGGTTCGTGAGTAGTAATTTGGGTAATGAAGAAGTTTTATGTCTCGGTCCGGAAAGTAAAGCAAATATTTCATGGAGTGCTCTGAAGCGTGAAGATTTCTTCTGTTCACCATCTGTACTTACTTCACCTACCGTCATAAGAACTGAAGTGGGAGCAGACATCAGCTTTGGGTGTTTTGTTCGCGGTGATCCCAAGCCCGTGGTAACTTGGTCACTTAATCGTGCTGATGTATTTAACAACATTGAAAACGGTGAAATCACTATTCATAGATACGATATAGATAATTTTAATGAGTACACAGACTATTACTTAAACAAAAGTTCACAGTGGGTTAACATAAGTATAAGTAATATTACCAACGATTTAGCCGGTGAATGGAAGTGTAGTGCCAAAAGTTCTGTAGGAGATGCTTCAACCTACTTGACTATTCTTTTACCTAAAGCTAGGACAGCTAGAACAGCGACTGCTAGGGTAGTACCCGACTATTCTGCATTTTTCCTGATCGCGGGGTCCATGTTAGCTATGACAGGAGTAGGATTTGTATCGGCGTATATCTGCTGGAAGACTAGACGCCGAAGAATCCCACCTAGCAGAAGTTTCACTGACCAAGAGAAGAAACTTTTAGATTCCTCATTGGCTGCAAGCTGTGACAGAGCAAGTGGAGATATGAGCTTGTCTTATGGATTTGAAATGTTAGATAGATCCATGTCTTTGGACAGCGAAGACAATAGATGCTTAGAACCGGTCCAAATTACAGTAGAAGGTCCACCGGGATCCTTCCCTCCCCCGCCTGCGGAGTTCGCCTTGCCGGCACCATATGGGAATATTTTTATATCAGTCCAAGTTTCTGGTCACAACGATGAATACCCTGATTTATTGGGTGGTGGAACAACATTACCTAGGCGGAATACGACATGTTTCTTGAAGTCTACTTATGATAATATGGGTCCTAGGATTACGGCAGCCGGTAGTTCGACGTGGTCTTTGCCGGGTGCTAATGACAAAAATACTGTCAAAGAGAATCTCTTGACGACGCCTCTGTCTAACTTTTCTACTGAATTTACCGCTTTGTAA

Protein

MGIRVCVIWLLVLMTIAPTGSDWLTCGNIPGCNCKWSSGKKTASCSSLGLKTPPELESDIQVLDLHGNPLETLGKDAFLRVNMINLQKVNLSSTCLRTLHSNAFNHLRILIELDLSQNELTQLSPDLFKATERLRVLILNDNPLTTLVAEQFPPLRYLKKLEISRCKLRSVSSFAFTNLRALESVNIQQNYLTHLHQSTFNLPLMNTLSLSDNPWYCDCGLREFHDWFVSSNLGNEEVLCLGPESKANISWSALKREDFFCSPSVLTSPTVIRTEVGADISFGCFVRGDPKPVVTWSLNRADVFNNIENGEITIHRYDIDNFNEYTDYYLNKSSQWVNISISNITNDLAGEWKCSAKSSVGDASTYLTILLPKARTARTATARVVPDYSAFFLIAGSMLAMTGVGFVSAYICWKTRRRRIPPSRSFTDQEKKLLDSSLAASCDRASGDMSLSYGFEMLDRSMSLDSEDNRCLEPVQITVEGPPGSFPPPPAEFALPAPYGNIFISVQVSGHNDEYPDLLGGGTTLPRRNTTCFLKSTYDNMGPRITAAGSSTWSLPGANDKNTVKENLLTTPLSNFSTEFTAL

Uniprot

H9JII6   A0A2W1BFD8   A0A2A4K9T7   A0A0L7LFL0   A0A194RJN9   A0A194Q8V2   + More
A0A0L7LA24   A0A194Q786   A0A0N0PB35   A0A2A4K9Z8   A0A2W1BLB4   A0A2H1VLJ7   A0A212F4S8   D1ZZM3   A0A1W4XGW3   A0A2R7WTA1   A0A0T6B3T3   A0A2J7PG78   U4UPJ5   N6TG30   N6TSK3   T1ID69   A0A067QTN0   A0A1S3D2D1   E0VGJ7   J9K4B7   A0A2H8TNW6   A0A2S2PTV6   A0A087ZUM4   A0A0C9Q5G2   A0A154P804   A0A2A3EUI0   A0A2S2R7J8   A0A310SE10   A0A0L7R398   A0A0M9A4K9   E2BYJ8   E2AYH5   F4X3R4   A0A158P037   A0A2P8ZPB5   A0A1J1IQ56   A0A151XJA2   A0A195F2V7   A0A0J7P084   A0A084VX68   A0A026WRW2   A0A1B0D6N8   W8BGG8   A0A182IN95   A0A182GJN4   A0A336M660   A0A336LE96   A0A182U583   B0XEQ6   A0A2C9GPR6   Q7QFF0   A0A182UXE7   A0A182XDU1   A0A182Q5P7   A0A0L0C883   A0A182MWI9   A0A182K5Q4   A0A182W5H6   A0A182RMX3   A0A182XXT8   A0A182SGP7   W5JRT2   Q17L59   A0A1A9YQB6   A0A1B0BLI9   A0A1B0A1F8   A0A1B0FI23   K7ISF4   A0A182FJ78   A0A1I8MGN2   A0A1A9W199   A0A1A9ULQ3   A0A182PBJ1   A0A1I8Q759   A0A0K8V7H5   A0A195E055   A0A182N194   A0A195BGP3   B3P521   B4PNF9   B4QSP5   A0A0B4KHL5   A0A195CQZ4   B4IJ14   Q9V9V6   Q297R4   B4G2X2  

Pubmed

19121390    28756777    26227816    26354079    22118469    18362917    + More
19820115    23537049    24845553    20566863    20798317    21719571    21347285    29403074    24438588    24508170    30249741    24495485    26483478    12364791    14747013    17210077    26108605    25244985    20920257    23761445    17510324    20075255    25315136    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085   

EMBL

BABH01027129    KZ150185    PZC72465.1    NWSH01000018    PCG80735.1    PCG80736.1    + More
JTDY01001333    KOB74165.1    KQ460297    KPJ16161.1    KQ459337    KPJ01395.1    JTDY01002017    KOB72317.1    KPJ01393.1    KQ461056    KPJ09928.1    PCG80734.1    PZC72463.1    ODYU01003222    SOQ41688.1    AGBW02010318    OWR48741.1    KQ971338    EFA02390.1    KK855489    PTY22793.1    LJIG01016129    KRT81527.1    NEVH01025635    PNF15333.1    KB632308    ERL91945.1    APGK01029141    KB740725    ENN79349.1    APGK01002864    KB734997    ENN83469.1    ACPB03002840    KK853033    KDR12250.1    DS235147    EEB12503.1    ABLF02041079    GFXV01003369    GFXV01003806    GFXV01007561    MBW15174.1    MBW15611.1    MBW19366.1    GGMR01020196    MBY32815.1    GBYB01009278    JAG79045.1    KQ434839    KZC08055.1    KZ288185    PBC34866.1    GGMS01016735    MBY85938.1    KQ768090    OAD53216.1    KQ414663    KOC65309.1    KQ435758    KOX75823.1    GL451483    EFN79232.1    GL443910    EFN61510.1    GL888624    EGI58861.1    ADTU01005290    PYGN01000004    PSN58346.1    CVRI01000057    CRL02373.1    KQ982074    KYQ60492.1    KQ981856    KYN34512.1    LBMM01000566    KMQ98050.1    ATLV01017851    KE525195    KFB42562.1    KK107139    QOIP01000003    EZA57844.1    RLU24780.1    AJVK01012101    GAMC01008713    JAB97842.1    JXUM01068626    KQ562510    KXJ75749.1    UFQT01000589    SSX25520.1    UFQS01004090    UFQT01004090    SSX16168.1    SSX35494.1    DS232855    EDS26165.1    APCN01001309    AAAB01008846    EAA06629.5    AXCN02001237    JRES01000755    KNC28648.1    AXCM01009331    ADMH02000610    ETN65635.1    CH477218    EAT47436.1    JXJN01016400    CCAG010018193    GDHF01017749    GDHF01011331    JAI34565.1    JAI40983.1    KQ979955    KYN18481.1    KQ976490    KYM83344.1    CH954182    EDV52935.1    CM000160    EDW99241.2    CM000364    EDX15142.1    AE014297    AGB96529.1    KQ977394    KYN03065.1    CH480846    EDW50967.1    BT100194    AAF57176.1    ACY40028.1    CM000070    EAL28141.4    CH479179    EDW24167.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000192223    UP000235965    UP000030742    UP000019118    UP000015103    UP000027135    UP000079169    UP000009046    UP000007819    UP000005203    UP000076502    UP000242457    UP000053825    UP000053105    UP000008237    UP000000311    UP000007755    UP000005205    UP000245037    UP000183832    UP000075809    UP000078541    UP000036403    UP000030765    UP000053097    UP000279307    UP000092462    UP000075880    UP000069940    UP000249989    UP000075902    UP000002320    UP000075840    UP000007062    UP000075903    UP000076407    UP000075886    UP000037069    UP000075883    UP000075881    UP000075920    UP000075900    UP000076408    UP000075901    UP000000673    UP000008820    UP000092443    UP000092460    UP000092445    UP000092444    UP000002358    UP000069272    UP000095301    UP000091820    UP000078200    UP000075885    UP000095300    UP000078492    UP000075884    UP000078540    UP000008711    UP000002282    UP000000304    UP000000803    UP000078542    UP000001292    UP000001819    UP000008744   

PRIDE

H9JII6    Q9V9V6   

Pfam

PF13855   LRR_8        + More
PF07679   I-set
PF00560   LRR_1
PF02770   Acyl-CoA_dh_M
PF00441   Acyl-CoA_dh_1

Interpro

IPR013783   Ig-like_fold        + More
IPR000483   Cys-rich_flank_reg_C       
IPR007110   Ig-like_dom       
IPR013098   Ig_I-set       
IPR032675   LRR_dom_sf       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR036179   Ig-like_dom_sf       
IPR003599   Ig_sub       
IPR003598   Ig_sub2       
IPR009100   AcylCoA_DH/oxidase_NM_dom       
IPR006091   Acyl-CoA_Oxase/DH_cen-dom       
IPR009075   AcylCo_DH/oxidase_C       
IPR036250   AcylCo_DH-like_C       
IPR037069   AcylCoA_DH/ox_N_sf       

SUPFAM

SSF48726   SSF48726        + More
SSF47203   SSF47203       
SSF56645   SSF56645       

Gene 3D

2.60.40.10     3.80.10.10     1.10.540.10    

ProteinModelPortal

H9JII6   A0A2W1BFD8   A0A2A4K9T7   A0A0L7LFL0   A0A194RJN9   A0A194Q8V2   + More
A0A0L7LA24   A0A194Q786   A0A0N0PB35   A0A2A4K9Z8   A0A2W1BLB4   A0A2H1VLJ7   A0A212F4S8   D1ZZM3   A0A1W4XGW3   A0A2R7WTA1   A0A0T6B3T3   A0A2J7PG78   U4UPJ5   N6TG30   N6TSK3   T1ID69   A0A067QTN0   A0A1S3D2D1   E0VGJ7   J9K4B7   A0A2H8TNW6   A0A2S2PTV6   A0A087ZUM4   A0A0C9Q5G2   A0A154P804   A0A2A3EUI0   A0A2S2R7J8   A0A310SE10   A0A0L7R398   A0A0M9A4K9   E2BYJ8   E2AYH5   F4X3R4   A0A158P037   A0A2P8ZPB5   A0A1J1IQ56   A0A151XJA2   A0A195F2V7   A0A0J7P084   A0A084VX68   A0A026WRW2   A0A1B0D6N8   W8BGG8   A0A182IN95   A0A182GJN4   A0A336M660   A0A336LE96   A0A182U583   B0XEQ6   A0A2C9GPR6   Q7QFF0   A0A182UXE7   A0A182XDU1   A0A182Q5P7   A0A0L0C883   A0A182MWI9   A0A182K5Q4   A0A182W5H6   A0A182RMX3   A0A182XXT8   A0A182SGP7   W5JRT2   Q17L59   A0A1A9YQB6   A0A1B0BLI9   A0A1B0A1F8   A0A1B0FI23   K7ISF4   A0A182FJ78   A0A1I8MGN2   A0A1A9W199   A0A1A9ULQ3   A0A182PBJ1   A0A1I8Q759   A0A0K8V7H5   A0A195E055   A0A182N194   A0A195BGP3   B3P521   B4PNF9   B4QSP5   A0A0B4KHL5   A0A195CQZ4   B4IJ14   Q9V9V6   Q297R4   B4G2X2  

PDB

6F2O     E-value=1.77711e-16,     Score=212

KEGG

101737940    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 24-like

GO

GO:0016021   GO:0050660   GO:0016627   GO:0043121   GO:0048167   GO:0005030   GO:0061174   GO:0005887   GO:0030424   GO:0005515   GO:0007264   GO:0006413   GO:0005760   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

SignalP

Position:   1 - 21,         Likelihood:  0.998657

 

 

Length:

583

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

31.6422099999999

Exp number, first 60 AAs:

9.10939

Total prob of N-in:

0.45421

outside

1  -  387

TMhelix

388  -  410

inside

411  -  583

 

 

Pi

280.496717

Theta

188.91171

Tajima's D

1.423441

CLR

0.230218

CSRT

0.767311634418279

Interpretation

Uncertain