SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08511
Annotation
PREDICTED:_uncharacterized_protein_LOC105389192_[Plutella_xylostella]
Location in the cell
PlasmaMembrane   Reliability : 4.89
 

Sequence

CDS
ATGACCAAACCGATTCCCTACAACACGTTATCGTCGACTTCTAGTTTGGGCAAAAAATACTGTCACTGCCTTCCACTGAGGATTTGTTGCTTCATCCTTGGTTACCTGACCATGTTCACCAATGTCTGCAATACCGGGCTGTTGTTTACTCTGACCACTTACATTGGAGCTGATACCAGTACCTTACCCGCCCTGCAGTCCTCGGAGACGCCCCTCATCAGTGGGATCGAAGTCGTGCTTCTGATGACAGTAATAAATGCTGCATGGTTGCTTGTCAACATCGCTTGTGTGGTCGGACTACACAGGAGGCGACCTGGTAACATCAAGTTCTACGTCCTCTTCGCAGCCTGCCGCCTCGTCCTGGTCTTTGCTGGGCTAGTGTACCTGACAATAACCGTCAGGAGTCCAGCTTTAATGTTACACCGCTTGGACATTGTTGTAGCATCTTTCTTCATCATGGTGTACAATACCTACGCCAGACAGCTGGAGAATGAGAAGCAGCAAATTCAAGCCCGACCTGAAAACCAGATCAGGGACGTCTCATTCATCGATCCTCGCACAATGGACGACAAGAAACTCATTCTGACTTAA
Protein
MTKPIPYNTLSSTSSLGKKYCHCLPLRICCFILGYLTMFTNVCNTGLLFTLTTYIGADTSTLPALQSSETPLISGIEVVLLMTVINAAWLLVNIACVVGLHRRRPGNIKFYVLFAACRLVLVFAGLVYLTITVRSPALMLHRLDIVVASFFIMVYNTYARQLENEKQQIQARPENQIRDVSFIDPRTMDDKKLILT

Summary

Ontologies

Topology

Length:
196
Number of predicted TMHs:
4
Exp number of AAs in TMHs:
87.91718
Exp number, first 60 AAs:
23.55388
Total prob of N-in:
0.99517
POSSIBLE N-term signal
sequence
inside
1  -  32
TMhelix
33  -  55
outside
56  -  74
TMhelix
75  -  97
inside
98  -  109
TMhelix
110  -  132
outside
133  -  136
TMhelix
137  -  159
inside
160  -  196
 
 

Population Genetic Test Statistics

Pi
183.546517
Theta
162.945104
Tajima's D
0.323085
CLR
0
CSRT
0.460726963651817
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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