Gene

KWMTBOMO08509  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009362

Annotation

PREDICTED:_coronin-7_[Bombyx_mori]

Location

Bomo_Chr14(+):11060894-11080848      View in EpiBrowser

Full name

Coronin      

Location in the cell

Nuclear   Reliability : 3.29

CDS

ATGGCGTGGAGATTTAAAGCATCAAAGTATAAAAATGCGGCGCCTATCGTGCCCAAGCCCGAAGCTTGCATTCGTGATGTATGCGTAGGTTCATACCAGACTTATGGGAACAACATTTGTGCATCTGCTGCCTTTATGGCCTTCAACTGGGAACATGTTGGATCAAGCATGGCTGTTTTGCCTCTGGACGACTGTGGCAGGAAAAGCAAGACAATGCCTCTACTCCACGCCCATTCTGATACCATAACCGATATGGAGTTTTCTCCGTTCCACGATGGGTTATTGCTGACCGGATCTCAGGATTCTTTGGTAAAAGTTTGGCACATACCCCCTGAAGGACTTAAAGAGTCTCTGTCGACTCCGGAGTGCTCCCTCTCACAGAAGCAAAGAAGAGTTGAGAATGTCGGCTTTCATCCAGTTGCTGATGGCCTGATTCATGTTGCATCAGGACATGAGTTGTCTCTGTGGGATTTAACTCAGCAGAAGGAGGCGTTTGTAAACAGGGATCATTCTGAAGTTATTCAGTCAACATCTTGGAAGAAAGATGGCAAGCTACTAGCAACATCATGCAAAGACAAGAAAGTGAGGATATTAGACCCGAGGGCCGCCGCGCCCATTCTGGATGTGGCCAACAGCCATCAGAACATCAAGGATAGCAGGATCGTGTGGTTGGGAGATCAGGATCGGATATTGACTACTGGTTTCGACTCAGCTCGCCTCAGACAGATTATAATACGTGACGTCCGTAATTTCTCTCAACCTCAGAAAACATTGGAGCTTGATTGTTCCACCGGAATACTGATGCCACTGTTTGATGCTGACACCAATATGCTGTTTTTGGCTGGGAAGGGTGACACCACCATACTATACATGGAGCTCACCGATAAAGAACCATATCTAATTGAGGGGTTGAGGCATTCAGGAGAACAAACCAAAGGTGCTTGCCTGGTACCAAAGCGAGCTCTCCGGGTCATGGAAGGTGAAGTCAACCGAGTACTGCAATTGACCGGGTCTTCTGTAGTACCGATAATGTATCAAGTACCCAGGAAGAGCTACCGCGAGTACCACGCGGACCTGTACCCTGACACGGCGGGCACGCTCACGTACCTCAGCGCCCCCATGTGGCTGGACAGTCTGGATCACCCAGTACCCAACATTTCTTTGAACCCAGCGGATAATAACTGCACCCAGATACATCGCGGTGATTTAGATAAAGTAGTGAAGGCGATTTTGTCAATGCCGCCATTAAAAAAGACCGAAGCCAAAAAGACTGCCGTGTCTCCTCGCATCGAAGACTTGAAGCCGTTACCGAAGACTCTACCGACACCAGACCCAGAAGAAGACCGCATCGATTTCGTGAACGTTAAAGACCTCATCAAAGGTATGGAGAGGCAGACCAAAGAACCAAAAGAGACGAATGGCTTCAGCAAGAAGATCACGGATAACGGACACGAGAACTCCACAAAGAGTTACGAGTGCGAACAAAACGAGACGACCGATGAGAAGACTGGGAAGACCGAGAAGACCGTCGATAAATCGGACAGCATCGAGTCCCCGGAGGGTTCCATGTCGAGGAGCAACAGCCTGGTCAACGGCGCGCCGACCCAGGCCCCGAAGCCGCTGCCCAGGTCCTCCATATCCGAGCCCGGCTCTGCGGACGAGCCCTCTGAAGTTCCCAAACCCAAACCCAGGACGACCGCCTCTCAGATATCTGGATACAAGCCCCGCCTGGGACCGAAGCCGTTCTCGGCGTCGTCGGGCAGCGAAGAGTTTTCGTTCGACAAGGTGTTCTCCGTGCCGACTGTGCCCGGACTCAAATCTGATGCAGTCACTTCACCGGCATCCACGGAGGCGACCACCCCGGTCTCCGCACCGCTGGTGAAGGACTCGTCCGAAGAGAAAGATAAGTCTCTCTCCCCGACTAGCGATATGGATAATCAGCCCAGCAAAGAGGAGTATATAAATGGAAAATCTGACACGAGTCTTGAAGAAGAGGTGAATTCATCTGATTCCGGCTACAGACCGAAGACGCCCAGCACCGCGGAGAGGAGGAAGATGTTCGAGTCCACTGAGTGCGGCGCGGGGGTGCAGTCGATAGCGGACCGGCGCCGCGCCTACGAGCTGCGCTCCCTCAGCGCGCTGGAGCCGCCCCCCTCGCCCTCGCCCGCGCCCCCCTCCCCCGCGCCACTCAGACGTAGAGACTCGCTGAAGTCCCGCAAGAGTCCTGACCGGGAGGAGAAACGTTCTTCAGTACCTAACGTTACTACCAAGAGAACTTCAACTGTCTTCGGTAAAGTGTCCAAGTTTCGACATTTGAAGGGCACGCCGGGACACAAGTCCACTCAAGTCGAGAACATCAAGAACATCAGCCGGCAGATCTCCGGAGAGTGCAACGGATTTTATGCGAACGGCGTGCGGTGCGCCGTCCCGCTGGCGGGCGGGGGCGGGCGGCTCGGCGTAGTGGAGCTGCCCGCGGGCGCCAGCCCAGTGTCGCGCGGCGCCGCCCCCCCGCCCGGCGGCCTGCACCCCCCCGCGGTGCTGCATCCCGCGGCGCTGCAGGACTGGTGTTGGGACCCCTTCAGGGACGACCGGCTCATGGTCGCGTGCGACGACGGTCTCATCAGGGAGTGGATCATACCAGAGAACGGTCTTCAAGAATCAACAAACGAACCAAATCGCATATTCTCGGCTCATCCAGACAAAATCTACATTATACGTTTCCACCCCACGGCCTCCGACATCCTGACCACGGCCGCCCACGATCTCACCGTCAAGATCTGGGACCTCAGCGTCGACGAACCGAAGGCGGAAATTGTATTGACCGGTCACACCGAACAAATATACGCTCTAGACTGGTCACCCTGCGGAGAACATTTGGCTACACTGTGTAAAGATGGCTTAATTAGGGTGTACGCCCCCCGCTCGTCTGCGTCCCCGCTGCGCAGCGGGGCGGGCCCGGCGGGGTCGCGGGGGGGCCGCCTGGTGTGGGCGCTCGGGGGGACGCATCTAGTCGTCACCGGCTTCGACAAAGTGTCGGAGCGGCAGATCCTGCTGTACAGCGCGACACAGCTGGAGGCGCCGCTGTGCACGCTGGGGCTGGACGTGTCTCCAGCTGTTCTGCAGCCTCACCTGGACCACGACTCCGCCACGCTGTTCCTCACGGGCCGGGGTGACTCCACCATCTACTGCTACGAGGTGACGGGCGAGGCGCCGCACCTGTGCGCGCTGTCCCACCACCGCTGCGCCACGCTGCACCAGGGGATCTGCTTCCTGCAGAAAAATCTTGTCGCTGTCGAGAAGGTCGAATTCGCTCGCGCTTTGAGACTTACGAATGGCAACATCGAGCCCCTGTCGTTCACGGTGCCCAGGATAAAGAGCGAGCTGTTCCAGGACGACCTGTTCCCGGCGACGCTGGTGACGTGGCAGCCCTGGCAGGGCGCGCAGGGCTGGCTGCAGGGCCGCCCCGCGCCCCCCCGCCACCGCAGCCTGCAGCCGCCCGGCATGCCTGCACGTGCGTAG

Protein

MAWRFKASKYKNAAPIVPKPEACIRDVCVGSYQTYGNNICASAAFMAFNWEHVGSSMAVLPLDDCGRKSKTMPLLHAHSDTITDMEFSPFHDGLLLTGSQDSLVKVWHIPPEGLKESLSTPECSLSQKQRRVENVGFHPVADGLIHVASGHELSLWDLTQQKEAFVNRDHSEVIQSTSWKKDGKLLATSCKDKKVRILDPRAAAPILDVANSHQNIKDSRIVWLGDQDRILTTGFDSARLRQIIIRDVRNFSQPQKTLELDCSTGILMPLFDADTNMLFLAGKGDTTILYMELTDKEPYLIEGLRHSGEQTKGACLVPKRALRVMEGEVNRVLQLTGSSVVPIMYQVPRKSYREYHADLYPDTAGTLTYLSAPMWLDSLDHPVPNISLNPADNNCTQIHRGDLDKVVKAILSMPPLKKTEAKKTAVSPRIEDLKPLPKTLPTPDPEEDRIDFVNVKDLIKGMERQTKEPKETNGFSKKITDNGHENSTKSYECEQNETTDEKTGKTEKTVDKSDSIESPEGSMSRSNSLVNGAPTQAPKPLPRSSISEPGSADEPSEVPKPKPRTTASQISGYKPRLGPKPFSASSGSEEFSFDKVFSVPTVPGLKSDAVTSPASTEATTPVSAPLVKDSSEEKDKSLSPTSDMDNQPSKEEYINGKSDTSLEEEVNSSDSGYRPKTPSTAERRKMFESTECGAGVQSIADRRRAYELRSLSALEPPPSPSPAPPSPAPLRRRDSLKSRKSPDREEKRSSVPNVTTKRTSTVFGKVSKFRHLKGTPGHKSTQVENIKNISRQISGECNGFYANGVRCAVPLAGGGGRLGVVELPAGASPVSRGAAPPPGGLHPPAVLHPAALQDWCWDPFRDDRLMVACDDGLIREWIIPENGLQESTNEPNRIFSAHPDKIYIIRFHPTASDILTTAAHDLTVKIWDLSVDEPKAEIVLTGHTEQIYALDWSPCGEHLATLCKDGLIRVYAPRSSASPLRSGAGPAGSRGGRLVWALGGTHLVVTGFDKVSERQILLYSATQLEAPLCTLGLDVSPAVLQPHLDHDSATLFLTGRGDSTIYCYEVTGEAPHLCALSHHRCATLHQGICFLQKNLVAVEKVEFARALRLTNGNIEPLSFTVPRIKSELFQDDLFPATLVTWQPWQGAQGWLQGRPAPPRHRSLQPPGMPARA

Similarity

Belongs to the WD repeat coronin family.

Uniprot

A0A437B8C4   A0A2A4JVU7   A0A2H1UZY6   A0A194Q776   A0A195E5Y7   A0A151ILV8   + More
A0A026WIY7   A0A195EUQ7   E2BLK3   A0A151HYK4   A0A151WWT7   E2AJP3   A0A1I8MS29   A0A0K8UVX9   A0A0L7R304   A0A1I8MS41   A0A3L8DYQ3   A0A1I8PG46   A0A1S4FM51   A0A1I8PFV7   D1ZZH3   A0A1B0B3W2   A0A1A9XVI4   A0A0J7NL61   A0A194RFD0   A0A1B0CN23   A0A146LYG7   T1I6B9   A0A310SE16   F4W4C8  

Pubmed

26354079    24508170    20798317    25315136    30249741    18362917    + More
19820115    26823975    21719571   

EMBL

RSAL01000133    RVE46333.1    NWSH01000476    PCG76131.1    ODYU01000049    SOQ34160.1    + More
KQ459337    KPJ01397.1    KQ979608    KYN20501.1    KQ977085    KYN05872.1    KK107182    EZA56007.1    KQ981965    KYN31886.1    GL449033    EFN83440.1    KQ976717    KYM76777.1    KQ982685    KYQ52340.1    GL440062    EFN66327.1    GDHF01021593    GDHF01002876    JAI30721.1    JAI49438.1    KQ414663    KOC65257.1    QOIP01000003    RLU25079.1    KQ971338    EFA02370.1    JXJN01008092    LBMM01003731    KMQ93195.1    KQ460297    KPJ16164.1    AJWK01019673    AJWK01019674    AJWK01019675    AJWK01019676    AJWK01019677    AJWK01019678    AJWK01019679    GDHC01006953    JAQ11676.1    ACPB03001807    KQ760801    OAD58963.1    GL887513    EGI70941.1   

Proteomes

UP000283053    UP000218220    UP000053268    UP000078492    UP000078542    UP000053097    + More
UP000078541    UP000008237    UP000078540    UP000075809    UP000000311    UP000095301    UP000053825    UP000279307    UP000095300    UP000007266    UP000092460    UP000092443    UP000036403    UP000053240    UP000092461    UP000015103    UP000007755   

Pfam

PF08953   DUF1899        + More
PF00400   WD40
PF12894   ANAPC4_WD40
PF00071   Ras

Interpro

IPR027331   CORO7        + More
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR015505   Coronin       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR015048   DUF1899       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR024977   Apc4_WD40_dom       
IPR005225   Small_GTP-bd_dom       
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR041820   Rab30       
IPR011044   Quino_amine_DH_bsu       
IPR011990   TPR-like_helical_dom_sf       

SUPFAM

SSF50978   SSF50978        + More
SSF52540   SSF52540       
SSF48452   SSF48452       
SSF50969   SSF50969       

Gene 3D

2.130.10.10     1.25.40.10    

CDD

cd04114  Rab30

ProteinModelPortal

A0A437B8C4   A0A2A4JVU7   A0A2H1UZY6   A0A194Q776   A0A195E5Y7   A0A151ILV8   + More
A0A026WIY7   A0A195EUQ7   E2BLK3   A0A151HYK4   A0A151WWT7   E2AJP3   A0A1I8MS29   A0A0K8UVX9   A0A0L7R304   A0A1I8MS41   A0A3L8DYQ3   A0A1I8PG46   A0A1S4FM51   A0A1I8PFV7   D1ZZH3   A0A1B0B3W2   A0A1A9XVI4   A0A0J7NL61   A0A194RFD0   A0A1B0CN23   A0A146LYG7   T1I6B9   A0A310SE16   F4W4C8  

PDB

2B4E     E-value=4.23687e-55,     Score=548

KEGG

101742193    K18619 coronin-7 | (RefSeq) coronin-7

GO

GO:0005794   GO:0003924   GO:0005525   GO:0051015   GO:0007015   GO:0005515   GO:0007264   GO:0006413   GO:0005760   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10856:SF20   PTHR10856  

Length:

1172

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.23093

Exp number, first 60 AAs:

0.22377

Total prob of N-in:

0.01108

outside

1  -  1172

 

 

Pi

273.570815

Theta

180.836825

Tajima's D

1.826553

CLR

0.220149

CSRT

0.854407279636018

Interpretation

Uncertain