Gene

KWMTBOMO08508  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009361

Annotation

PREDICTED:_ras-related_protein_Rab-30_[Papilio_polytes]

Location

Bomo_Chr14(+):11048404-11054534      View in EpiBrowser

Full name

Coronin      

Location in the cell

Cytoplasmic   Reliability : 3.759

CDS

ATGGAAGATTACAAGTTTCTATTTAAAGTTGTGCTCGTCGGGAACGCAGGTGTTGGGAAGACTTGTTTGGTGCGTCGGTTCACACAGGGTTTATTTCCGCCGGGTCAAGGTGCTACCATAGGAGTGGATTTCATGATTAAAACTGTGGAAGTTGATGGTGAGAAAGTGAAGCTTCAAATATGGGACACAGCAGGCCAAGAGAGATTCCGATCAATAACACAAAGCTACTATCGTTCAGCTCATGCATTGATACTTGTTTATGACATATCTTGTCAACCTACATTTGATTGTTTACCTGACTGGCTAAGGGAGATTGAAGAGTATGCGAATAACAAAGTGCTAAGGATATTAGTTGGTAATAAAACAGACAGAGAAGACAGAGAGATCCCCAAGCACATTGGCGAGGATTTTGCCCAGCGTCACGGCATGTACTTCTTAGAGACATCAGCCAAGGAAGCAGAGAATGTTGAAAGATTATTTATGGAAATTGCAGTGGAACTTATGGAGCAAGCAAAATGCAAGGAGCTACCGAAGTATGACGGCAGCCTCGGTCCGATCAATGGTAAGACGACGTCGGTCGGCGATGGTTCCTGTTGTCTGCGTTCTTAA

Protein

MEDYKFLFKVVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVDGEKVKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPDWLREIEEYANNKVLRILVGNKTDREDREIPKHIGEDFAQRHGMYFLETSAKEAENVERLFMEIAVELMEQAKCKELPKYDGSLGPINGKTTSVGDGSCCLRS

Similarity

Belongs to the WD repeat coronin family.

Uniprot

H9JIL1   A0A2A4JXL8   A0A3S2LGQ3   A0A194Q789   S4PC86   A0A212EKX5   + More
A0A232F6C8   E2BHI1   E9IKZ2   A0A0J7KAW0   A0A026W1J9   F4WME6   A0A195BSB0   A0A195F372   A0A158P1U8   A0A2A3ET51   V9IE86   A0A088AUH8   A0A195DC73   A0A151WJP1   A0A195D1Y9   A0A0L7R817   A0A067RAT4   A0A1B6LYE3   A0A1B6JTV1   A0A154NZY1   A0A2H1UZY6   A0A0N0U3V7   A0A0T6B1N8   D2A0S6   A0A1W4X6D1   E0W027   A0A0P4VIB8   A0A023F9Q3   A0A069DQL2   R4G8D0   A0A165VFP8   V5G812   A0A0A9WAF9   R4WDT4   K7J9T0   A0A2W1BD27   A0A1S3CUR4   A0A2P8XV94   A0A1D2NFH3   E2AZJ7   T1J1R2   U5EZD6   A0A0C9R7L5   A0A1L8DLJ4   A0A1L8DV23   A0A226CZP7   A0A034WAP7   A0A0K8V4P6   A0A0L0CK72   A0A0A1WFF7   A0A1A9XMJ8   A0A2H8TJW8   A0A2S2P8P6   J9JZP8   A0A1L8DLT1   A0A1B0BJ70   A0A1L8DV13   A0A3B0JNB8   B4JPE8   W8ATN2   A0A0M3QSZ3   B4MUE8   A0A1A9WXH6   B3N686   B4NZW9   A0A1B0FF16   A0A1A9VIT5   A0A1A9Z407   B3MKX4   B4M8Z5   Q29P35   A0A2J7QIX7   B4GJZ6   B4HY23   A0A0J9QY90   Q9VM50   B4KI94   A0A1I8M939   A0A1I8PYE5   A0A1W4VT42   A0A182TI36   V5IH10   A0A182LW79   A0A182RX39   A0A182JVU6   A0A182PE23   A0A182VRG2   A0A182SLM7   A0A182Q933   A0A182XW08   A0A182VL95   A0A182LR08   A0A182XGF2   Q7PYT1  

Pubmed

19121390    26354079    23622113    22118469    28648823    20798317    + More
21282665    24508170    30249741    21719571    21347285    24845553    18362917    19820115    20566863    27129103    25474469    26334808    25401762    26823975    23691247    20075255    28756777    29403074    27289101    25348373    26108605    25830018    17994087    24495485    18057021    17550304    15632085    23185243    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    25765539    25244985    20966253    12364791    14747013    17210077   

EMBL

BABH01027093    NWSH01000476    PCG76132.1    RSAL01000133    RVE46332.1    KQ459337    + More
KPJ01398.1    GAIX01005572    JAA86988.1    AGBW02014173    OWR42146.1    NNAY01000869    OXU26132.1    GL448301    EFN84834.1    GL764026    EFZ18672.1    LBMM01010320    KMQ87543.1    KK107488    QOIP01000012    EZA49898.1    RLU16303.1    GL888217    EGI64790.1    KQ976418    KYM89477.1    KQ981855    KYN34831.1    ADTU01001111    KZ288192    PBC34319.1    JR041426    AEY59443.1    KQ980989    KYN10491.1    KQ983036    KYQ48093.1    KQ976948    KYN06930.1    KQ414636    KOC67025.1    KK852773    KDR16816.1    GEBQ01011271    JAT28706.1    GECU01005134    JAT02573.1    KQ434778    KZC04430.1    ODYU01000049    SOQ34160.1    KQ435850    KOX70871.1    LJIG01016306    KRT80997.1    KQ971338    EFA01642.2    DS235855    EEB18983.1    GDKW01002093    JAI54502.1    GBBI01000500    JAC18212.1    GBGD01002997    JAC85892.1    ACPB03005971    GAHY01001187    JAA76323.1    KT984790    AMZ00342.1    GALX01002206    JAB66260.1    GBHO01040124    GBHO01040121    GBRD01001477    GDHC01021717    GDHC01005932    JAG03480.1    JAG03483.1    JAG64344.1    JAP96911.1    JAQ12697.1    AK417829    BAN21044.1    AAZX01005171    KZ150432    PZC70896.1    PYGN01001295    PSN35930.1    LJIJ01000062    ODN03835.1    GL444248    EFN61130.1    JH431789    GANO01000987    JAB58884.1    GBYB01008792    JAG78559.1    GFDF01006758    JAV07326.1    GFDF01003808    JAV10276.1    LNIX01000048    OXA38094.1    GAKP01007198    JAC51754.1    GDHF01018402    GDHF01016304    GDHF01011278    JAI33912.1    JAI36010.1    JAI41036.1    JRES01000300    KNC32612.1    GBXI01017082    GBXI01008760    JAC97209.1    JAD05532.1    GFXV01002611    MBW14416.1    GGMR01013214    MBY25833.1    ABLF02026358    GFDF01006757    JAV07327.1    JXJN01015339    GFDF01003807    JAV10277.1    OUUW01000006    SPP82363.1    CH916372    EDV98778.1    GAMC01014355    JAB92200.1    CP012523    ALC38013.1    CH963857    EDW76074.1    CH954177    EDV59173.1    KQS70662.1    KQS70663.1    CM000157    EDW87796.1    KRJ97412.1    KRJ97413.1    CCAG010000397    CH902620    EDV30632.1    KPU72963.1    KPU72964.1    CH940654    EDW57671.1    CH379058    EAL34458.2    KRT03543.1    NEVH01013570    PNF28544.1    CH479184    EDW36962.1    CH480818    EDW51953.1    CM002910    KMY88687.1    KMY88688.1    KMY88689.1    AE014134    AY071080    AAF52477.1    AAL48702.1    AAN10612.1    AAN10613.1    AFH03600.1    CH933807    EDW12387.1    KRG03221.1    KRG03222.1    KRG03223.1    GANP01005752    JAB78716.1    AXCM01001046    AXCN02000239    AAAB01008987    EAA01022.5   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000007151    UP000215335    + More
UP000008237    UP000036403    UP000053097    UP000279307    UP000007755    UP000078540    UP000078541    UP000005205    UP000242457    UP000005203    UP000078492    UP000075809    UP000078542    UP000053825    UP000027135    UP000076502    UP000053105    UP000007266    UP000192223    UP000009046    UP000015103    UP000002358    UP000079169    UP000245037    UP000094527    UP000000311    UP000198287    UP000037069    UP000092443    UP000007819    UP000092460    UP000268350    UP000001070    UP000092553    UP000007798    UP000091820    UP000008711    UP000002282    UP000092444    UP000078200    UP000092445    UP000007801    UP000008792    UP000001819    UP000235965    UP000008744    UP000001292    UP000000803    UP000009192    UP000095301    UP000095300    UP000192221    UP000075902    UP000075883    UP000075900    UP000075881    UP000075885    UP000075920    UP000075901    UP000075886    UP000076408    UP000075903    UP000075882    UP000076407    UP000007062   

PRIDE

H9JIL1    Q9VM50    V5IH10   

Pfam

PF00071   Ras        + More
PF12894   ANAPC4_WD40
PF00400   WD40
PF08953   DUF1899
PF02213   GYF

Interpro

IPR005225   Small_GTP-bd_dom        + More
IPR027417   P-loop_NTPase       
IPR001806   Small_GTPase       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR015048   DUF1899       
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR024977   Apc4_WD40_dom       
IPR015505   Coronin       
IPR036322   WD40_repeat_dom_sf       
IPR027331   CORO7       
IPR019775   WD40_repeat_CS       
IPR041820   Rab30       
IPR003169   GYF       
IPR035445   GYF-like_dom_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF50978   SSF50978       
SSF55277   SSF55277       

Gene 3D

2.130.10.10     3.30.1490.40    

CDD

cd04114  Rab30
cd00072  GYF

ProteinModelPortal

H9JIL1   A0A2A4JXL8   A0A3S2LGQ3   A0A194Q789   S4PC86   A0A212EKX5   + More
A0A232F6C8   E2BHI1   E9IKZ2   A0A0J7KAW0   A0A026W1J9   F4WME6   A0A195BSB0   A0A195F372   A0A158P1U8   A0A2A3ET51   V9IE86   A0A088AUH8   A0A195DC73   A0A151WJP1   A0A195D1Y9   A0A0L7R817   A0A067RAT4   A0A1B6LYE3   A0A1B6JTV1   A0A154NZY1   A0A2H1UZY6   A0A0N0U3V7   A0A0T6B1N8   D2A0S6   A0A1W4X6D1   E0W027   A0A0P4VIB8   A0A023F9Q3   A0A069DQL2   R4G8D0   A0A165VFP8   V5G812   A0A0A9WAF9   R4WDT4   K7J9T0   A0A2W1BD27   A0A1S3CUR4   A0A2P8XV94   A0A1D2NFH3   E2AZJ7   T1J1R2   U5EZD6   A0A0C9R7L5   A0A1L8DLJ4   A0A1L8DV23   A0A226CZP7   A0A034WAP7   A0A0K8V4P6   A0A0L0CK72   A0A0A1WFF7   A0A1A9XMJ8   A0A2H8TJW8   A0A2S2P8P6   J9JZP8   A0A1L8DLT1   A0A1B0BJ70   A0A1L8DV13   A0A3B0JNB8   B4JPE8   W8ATN2   A0A0M3QSZ3   B4MUE8   A0A1A9WXH6   B3N686   B4NZW9   A0A1B0FF16   A0A1A9VIT5   A0A1A9Z407   B3MKX4   B4M8Z5   Q29P35   A0A2J7QIX7   B4GJZ6   B4HY23   A0A0J9QY90   Q9VM50   B4KI94   A0A1I8M939   A0A1I8PYE5   A0A1W4VT42   A0A182TI36   V5IH10   A0A182LW79   A0A182RX39   A0A182JVU6   A0A182PE23   A0A182VRG2   A0A182SLM7   A0A182Q933   A0A182XW08   A0A182VL95   A0A182LR08   A0A182XGF2   Q7PYT1  

PDB

2EW1     E-value=4.99266e-74,     Score=703

KEGG

101737287    K07917 Ras-related protein Rab-30 | (RefSeq) ras-related protein Rab-30

GO

GO:0003924   GO:0005525   GO:0005794   GO:0006886   GO:0006888   GO:0005802   GO:0032482   GO:0000139   GO:0005789   GO:0004767   GO:0005768   GO:0007391   GO:0045202   GO:0007390   GO:0046529   GO:0008258   GO:0031410   GO:0016192   GO:0031982   GO:0007264   GO:0006413   GO:0005760   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10856   PTHR10856:SF20  

Length:

202

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0981599999999999

Exp number, first 60 AAs:

0.09713

Total prob of N-in:

0.05626

outside

1  -  202

 

 

Pi

228.167681

Theta

157.324321

Tajima's D

1.277145

CLR

0.294586

CSRT

0.739113044347783

Interpretation

Uncertain