Gene

KWMTBOMO08506

Pre Gene Modal

BGIBMGA009360

Annotation

translation_initiation_factor_1a_[Bombyx_mori]

Location

Bomo_Chr14(+):11039284-11040114      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.383

CDS

ATGTCAAAAGTGTCTAAAAGAAAGCATGTTATGAATGAAGCTCTTTGGGACGATTACGAATTGCCAAAAGACAATCAGAACATCGTTAAAGTTGTTAAAAGTAAAGGAAATAATTTACACGAGATTACTACACCAACAGGCGAAGAATATCTAGTTTCAATGCCAACTAAATTCCGTAAAAACATATGGGTTAAACGCGGAGATTACATATTAGTTGAACCAATCCCTGAAGGAGACAAAGTTAAGGCTGAAATTGTTAAAATAATGAATAAAGACTCAATAAAATTCTATAAAGAAAACAATGTATGGCCTAAACAGTTTGAGGACAATAAATCTGAAAATAAACCAAACGAAGACTTATTTGAAAATACAAATAGGAAAAACATTATAACATATGTGAGTGATAGTGACTCTACTAGCAGTGATCAAAGTGACAGTGAACAAGAAAATTAA

Protein

MSKVSKRKHVMNEALWDDYELPKDNQNIVKVVKSKGNNLHEITTPTGEEYLVSMPTKFRKNIWVKRGDYILVEPIPEGDKVKAEIVKIMNKDSIKFYKENNVWPKQFEDNKSENKPNEDLFENTNRKNIITYVSDSDSTSSDQSDSEQEN

Uniprot

H9JIL0   Q1HQA3   A0A2A4JWW7   A0A2W1BA73   A0A194Q8V5   A0A0L7KWG7   + More
A0A0N0PEA6   A0A3S2LX72   S4PA48   A0A1E1W9Z2   A0A212EKY1   A0A1E1WV33   A0A2H1UZW9   A0A2H1V2V0   D2A2U4   A0A067QN25   A0A2P8YGW7   A0A2H1V473   T1JA27   A0A0K8TL12   A0A1Y1KQB4   A0A195BRB6   A0A158P1C3   A0A1Y1KT27   A0A0M8ZTZ3   F4W9B1   A0A0L7RKI8   A0A195CIC4   A0A151J3L2   A0A151X943   V5HM78   Q4PMA4   A0A154NXU3   A0A0L0BZS8   A0A0K8R9K3   A0A023FEB8   A0A131XTT5   A0A1W4WZ81   A0A182YIJ9   A0A2L2Y285   U5EJ62   A0A0P5X5B8   A0A0P5LQ97   G3MPP8   A0A023FH58   V5IGG9   A0A1E1XUY2   A0A1S3JD80   A0A023GHF9   A0A182N8M1   A0A1B0AV39   A0A1A9Y5M5   A0A293M3S7   L7M686   A0A182R7S9   A0A182WA81   A0A182M4A4   A0A2R5LDR9   E9HGJ3   A0A1A9ZPS2   E2A681   A0A088AV74   A0A0J7NS11   A0A3Q3JJ16   A0A182SRP8   A0A087UT12   A0A224YWN7   A0A131YCE3   A0A182QV49   B0W733   A7UV64   A0A023GIC3   A0A182TW82   A0A0P5V5T7   A0A1B6DJW6   A0A023FGX0   A0A131XHI0   A0A2A3ES16   A0A3Q2YKG4   A0A182PQ40   A0A1S4H382   A0A182KJN7   A0A182I0M3   T1GP01   A0A1A9VJB8   A0A1I8MCG8   A0A1Q3FDG8   A0A182IT34   A0A182UZJ8   A0A2M3Z973   A0A1E1WXY0   A0A182XB27   A0A0K8WD17   A0A3Q3M6K1   A0A210PJE6   A0A2M4C2G9   B4JB59   A0A195F2R0   A0A182JQH7   A0A1I8NXV7  

Pubmed

19121390    28756777    26354079    26227816    23622113    22118469    + More
18362917    19820115    24845553    29403074    26369729    28004739    21347285    21719571    25765539    16431279    26108605    25244985    26561354    22216098    29209593    25576852    21292972    20798317    28797301    26830274    12364791    28049606    20966253    25315136    28503490    28812685    17994087   

EMBL

BABH01027092    DQ443149    ABF51238.1    NWSH01000476    PCG76134.1    KZ150432    + More
PZC70894.1    KQ459337    KPJ01400.1    JTDY01005024    KOB67465.1    KQ459928    KPJ19302.1    RSAL01000133    RVE46331.1    GAIX01003409    JAA89151.1    GDQN01007373    JAT83681.1    AGBW02014173    OWR42144.1    GDQN01000216    JAT90838.1    ODYU01000049    SOQ34158.1    ODYU01000420    SOQ35163.1    KQ971339    EFA02783.1    KK853147    KDR10712.1    PYGN01000603    PSN43497.1    SOQ35162.1    JH431981    GDAI01002745    JAI14858.1    GEZM01076842    JAV63603.1    KQ976418    KYM89501.1    ADTU01001055    GEZM01076844    GEZM01076843    JAV63601.1    KQ435850    KOX70897.1    GL888002    EGI69293.1    KQ414572    KOC71333.1    KQ977720    KYN00491.1    KQ980275    KYN17014.1    KQ982402    KYQ56854.1    GANP01009770    JAB74698.1    DQ066223    AAY66860.1    KQ434778    KZC04372.1    JRES01001109    KNC25491.1    GADI01005983    JAA67825.1    GBBK01004156    JAC20326.1    GEFM01006054    JAP69742.1    IAAA01005445    LAA02273.1    GANO01002354    JAB57517.1    GDIP01077269    LRGB01001880    JAM26446.1    KZS10120.1    GDIQ01166742    GDIQ01010087    JAK84983.1    JO843849    AEO35466.1    GBBK01004103    JAC20379.1    GANP01006707    JAB77761.1    GFAA01000508    JAU02927.1    GBBM01002990    JAC32428.1    JXJN01003955    GFWV01008906    MAA33635.1    GACK01006371    JAA58663.1    AXCM01000013    GGLE01003493    MBY07619.1    GL732642    EFX69139.1    GL437116    EFN71061.1    LBMM01002131    KMQ95235.1    KK121460    KFM80501.1    GFPF01010881    MAA22027.1    GEDV01011524    JAP77033.1    AXCN02001856    DS231851    EDS37307.1    AAAB01008980    EDO63458.1    GBBM01002918    JAC32500.1    GDIP01119945    JAL83769.1    GEDC01011309    JAS25989.1    GBBK01004082    JAC20400.1    GEFH01001587    JAP66994.1    KZ288192    PBC34304.1    APCN01005220    CAQQ02068843    CAQQ02068844    GFDL01009445    JAV25600.1    GGFM01004323    MBW25074.1    GFAC01007567    JAT91621.1    GDHF01003327    JAI48987.1    NEDP02076550    OWF36609.1    GGFJ01010343    MBW59484.1    CH916368    EDW03951.1    KQ981855    KYN34860.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000037510    UP000053240    UP000283053    + More
UP000007151    UP000007266    UP000027135    UP000245037    UP000078540    UP000005205    UP000053105    UP000007755    UP000053825    UP000078542    UP000078492    UP000075809    UP000076502    UP000037069    UP000192223    UP000076408    UP000076858    UP000085678    UP000075884    UP000092460    UP000092443    UP000075900    UP000075920    UP000075883    UP000000305    UP000092445    UP000000311    UP000005203    UP000036403    UP000261600    UP000075901    UP000054359    UP000075886    UP000002320    UP000007062    UP000075902    UP000242457    UP000264820    UP000075885    UP000075882    UP000075840    UP000015102    UP000078200    UP000095301    UP000075880    UP000075903    UP000076407    UP000261640    UP000242188    UP000001070    UP000078541    UP000075881    UP000095300   

PRIDE

H9JIL0    Q1HQA3   

Pfam

PF01176   eIF-1a        + More
PF18136   DNApol_Exo
PF00476   DNA_pol_A

Interpro

IPR012340   NA-bd_OB-fold        + More
IPR001253   TIF_eIF-1A       
IPR006196   RNA-binding_domain_S1_IF1       
IPR039294   EIF1AD       
IPR019760   DNA-dir_DNA_pol_A_CS       
IPR041336   DNApol_Exo       
IPR002297   DNA-dir_DNA_pol_A_mt       
IPR012337   RNaseH-like_sf       
IPR001098   DNA-dir_DNA_pol_A_palm_dom       

SUPFAM

SSF50249   SSF50249        + More
SSF53098   SSF53098       

ProteinModelPortal

H9JIL0   Q1HQA3   A0A2A4JWW7   A0A2W1BA73   A0A194Q8V5   A0A0L7KWG7   + More
A0A0N0PEA6   A0A3S2LX72   S4PA48   A0A1E1W9Z2   A0A212EKY1   A0A1E1WV33   A0A2H1UZW9   A0A2H1V2V0   D2A2U4   A0A067QN25   A0A2P8YGW7   A0A2H1V473   T1JA27   A0A0K8TL12   A0A1Y1KQB4   A0A195BRB6   A0A158P1C3   A0A1Y1KT27   A0A0M8ZTZ3   F4W9B1   A0A0L7RKI8   A0A195CIC4   A0A151J3L2   A0A151X943   V5HM78   Q4PMA4   A0A154NXU3   A0A0L0BZS8   A0A0K8R9K3   A0A023FEB8   A0A131XTT5   A0A1W4WZ81   A0A182YIJ9   A0A2L2Y285   U5EJ62   A0A0P5X5B8   A0A0P5LQ97   G3MPP8   A0A023FH58   V5IGG9   A0A1E1XUY2   A0A1S3JD80   A0A023GHF9   A0A182N8M1   A0A1B0AV39   A0A1A9Y5M5   A0A293M3S7   L7M686   A0A182R7S9   A0A182WA81   A0A182M4A4   A0A2R5LDR9   E9HGJ3   A0A1A9ZPS2   E2A681   A0A088AV74   A0A0J7NS11   A0A3Q3JJ16   A0A182SRP8   A0A087UT12   A0A224YWN7   A0A131YCE3   A0A182QV49   B0W733   A7UV64   A0A023GIC3   A0A182TW82   A0A0P5V5T7   A0A1B6DJW6   A0A023FGX0   A0A131XHI0   A0A2A3ES16   A0A3Q2YKG4   A0A182PQ40   A0A1S4H382   A0A182KJN7   A0A182I0M3   T1GP01   A0A1A9VJB8   A0A1I8MCG8   A0A1Q3FDG8   A0A182IT34   A0A182UZJ8   A0A2M3Z973   A0A1E1WXY0   A0A182XB27   A0A0K8WD17   A0A3Q3M6K1   A0A210PJE6   A0A2M4C2G9   B4JB59   A0A195F2R0   A0A182JQH7   A0A1I8NXV7  

PDB

2DGY     E-value=8.9884e-23,     Score=258

KEGG

732886    K15025 probable RNA-binding protein EIF1AD | (RefSeq) translation initiation factor 1a

GO

GO:0003743   GO:0006260   GO:0003677   GO:0003887   GO:0005760   GO:0003723   GO:0006413   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR21641   PTHR10267  

Length:

150

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.51843

inside

1  -  150

 

 

Pi

231.250467

Theta

190.432802

Tajima's D

0.674542

CLR

0

CSRT

0.566371681415929

Interpretation

Uncertain