SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08505  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA009359
Annotation
PREDICTED:_DNA_polymerase_subunit_gamma-1?_mitochondrial_[Papilio_xuthus]
Full name
DNA polymerase subunit gamma-1, mitochondrial       + More
Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial      
Alternative Name
Mitochondrial DNA polymerase catalytic subunit
Location in the cell
Mitochondrial   Reliability : 1.49
 

Sequence

CDS
ATGAATTGCTGTTCAGCGAGCGAGCCGACCTGGATGACGGCGAGCAACGCGCACCGGGAGCGCGTGGGCTCGGAGCTGCGGGCGGCCGTGCAGGCGCCGCCCTCCGCGCGCCTCGTGGGGGCCGACGTGGACTCGCAGGAGCTGTGGATCGCGTCGTTGCTGGGAGACAGCTCGCTGGGTGTGTGCGGGGGCACGGCGCTGGGCTGGGCCGTGCTGGCGGGGGACCGCGCGCGCCACACCGACCTGCACTCGCTCACGGCCGCCGCGAGTGGCATCTCCCGGGACCACGCTAAGGTCATCAACTACGCACGGATCTACGGAGCCGGTCAAAGCTTCGCGGAGAGACTACTGAAACAGTTCAATCCGACTATGACGATATCCGAAGCCAAGAGCAAGGCGGCTAAGATGTTCGCGACTACCAAGGGCAAGCGGGTCTACACGTTGAAGAAGCAATACATGGAGGGGTTCATGGACGAAGACTTGGAAGGCCAGGCGCTCGAGATGAACAGTTACCAGGCGACGAGGCTCGCCAAGCTGACAGGGAGGCCAGTGGAGGAAATGTTCGACAGGCCCAAGTGGGTGGGCGGCACCGAGTCCGAAATGTTTAACAAACTGGAGGAGATCGCTGACTCGGCGGCGCCCCGCACGGCGTTCCTGTGGGCGCGGCTGTCCCGCGCGCTGGAGCGGGCCGCGCCGCGCTGGGCCGCCACGCGCCTCAACTGGGCCGTGCAGAGCGCCGCCGCCGACTTCCTGCACCTCATGCTGGTCAGCATGGCGCATCTAGCTCCCGAAGCCAGGTTCTGTCTGAGTTTCCACGATGAGGTTCGTTACTTGGTCCCCGAGGAGCGGAAGTACGAGGCGGCCCTGGCACTACAGATCACTAACTTACTCACGAGAGCATTCTGTTCGCAAAGGGTCGGCATTAACGATTTGCCACTCTCGGTGGCGTTCTTCACGTCAGTCGAAGTCGACCAAGTGCTGAGGAAGGAATCCAACAACAGCTGCGTGACGCCGTCGAACCCTCACGGCTTGGAGAAAGGATACGGAATTCCGAATGGCGAATCCTTGAACATATTCGATGTGTTGGAAAAATGTAAAATAAAATCTAAATAA
Protein
MNCCSASEPTWMTASNAHRERVGSELRAAVQAPPSARLVGADVDSQELWIASLLGDSSLGVCGGTALGWAVLAGDRARHTDLHSLTAAASGISRDHAKVINYARIYGAGQSFAERLLKQFNPTMTISEAKSKAAKMFATTKGKRVYTLKKQYMEGFMDEDLEGQALEMNSYQATRLAKLTGRPVEEMFDRPKWVGGTESEMFNKLEEIADSAAPRTAFLWARLSRALERAAPRWAATRLNWAVQSAAADFLHLMLVSMAHLAPEARFCLSFHDEVRYLVPEERKYEAALALQITNLLTRAFCSQRVGINDLPLSVAFFTSVEVDQVLRKESNNSCVTPSNPHGLEKGYGIPNGESLNIFDVLEKCKIKSK

Summary

Description
Involved in the replication of mitochondrial DNA. Has both 5'-3' DNA polymerase and 3'-5' exonuclease activity.
Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Catalytic Activity
a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)
ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate
Cofactor
Mg(2+)
Subunit
Heterotrimer composed of a catalytic subunit and a homodimer of accessory subunits.
Subunit of the heterotrimeric GatCAB amidotransferase (AdT) complex, composed of A, B and C subunits.
Similarity
Belongs to the adaptor complexes medium subunit family.
Belongs to the DNA polymerase type-A family.
Belongs to the GatC family.
Keywords
Complete proteome   Direct protein sequencing   DNA replication   DNA-binding   DNA-directed DNA polymerase   Magnesium   Mitochondrion   Nucleotidyltransferase   Reference proteome   Transferase   Transit peptide  
Feature
chain  DNA polymerase subunit gamma-1, mitochondrial
EC Number
2.7.7.7
6.3.5.-
EMBL
BABH01027089    BABH01027090    BABH01027091    BABH01027092    KQ459928    KPJ19301.1    + More
NWSH01000476    PCG76135.1    KQ459337    KPJ01401.1    RSAL01000133    RVE46330.1    ODYU01000420    SOQ35160.1    GAIX01003902    JAA88658.1    ODYU01000421    SOQ35164.1    CH902432    EAT32219.1    AJVK01031300    KQ971339    EFA02782.2    GAMC01004758    JAC01798.1    KI210427    ERL96259.1    GDHF01019621    JAI32693.1    GEBQ01009189    JAT30788.1    KK853147    KDR10711.1    GBYB01007807    JAG77574.1    GBXI01016784    JAC97507.1    PYGN01000603    PSN43497.1    AJWK01005375    KZ288192    PBC34303.1    GFDL01015383    JAV19662.1    CP012523    ALC39545.1    NEVH01026401    PNF14199.1    GGFK01005043    MBW38364.1    JXUM01134030    JXUM01134031    JXUM01134032    JXUM01134033    KQ568063    KXJ69158.1    PNF14200.1    ADMH02000150    ETN67597.1    GEDC01018080    JAS19218.1    DS232201    EDS37252.1    KK107488    QOIP01000012    EZA49914.1    RLU15840.1    FX985751    BBA93638.1    KQ977720    KYN00492.1    KQ414572    KOC71332.1    APGK01046987    APGK01046988    APGK01046989    KB741073    ENN74383.1    APCN01003967    GL764026    EFZ18754.1    GL437116    EFN71060.1    CH963920    EDW77737.2    GL888002    EGI69294.1    AAAB01008846    EAA06413.5    AXCN02001308    GL448228    EFN85052.1    LBMM01002131    KMQ95236.1    KQ976418    KYM89500.1    CH479195    EDW27333.1    KQ980275    KYN17013.1    CH379061    EAL33303.3    GEZM01076844    JAV63600.1    GEZM01076843    JAV63602.1    U60298    U62547    AE014134    AY089226    BT044244    OUUW01000006    SPP82538.1    KQ981855    KYN34859.1    ADTU01001055    CM000157    EDW88356.1    CH954177    EDV58633.1    CM002910    KMY90165.1    CH480818    EDW51682.1    ATLV01023390    KE525342    KFB49058.1    GECU01016954    GECU01003061    JAS90752.1    JAT04646.1    CCAG010008798    CH902620    KPU73732.1    EDV32004.2    KQ435850    KOX70898.1    CH933807    EDW13493.1    CH916368    EDW03213.1    CH940654    EDW57540.1    UFQS01000392    UFQT01000392    SSX03542.1    SSX23907.1    JXJN01015380    JXJN01009687    CM000361    EDX04974.1    KK854446    PTY15917.1    GDHC01006809    JAQ11820.1    CVRI01000053    CRK99798.1    AAZX01001283    AAZX01009390    AAZX01011810    AAZX01015834    GECL01002696    JAP03428.1    ABLF02039531    ACPB03005539    GFTR01008473    JAW07953.1    GBGD01000281    JAC88608.1    HAEC01001336    SBQ69413.1    GANP01005848    JAB78620.1   
Pfam
PF18136   DNApol_Exo        + More
PF00928   Adap_comp_sub
PF01217   Clat_adaptor_s
PF00476   DNA_pol_A
PF01176   eIF-1a
PF03129   HGTP_anticodon
PF02686   Glu-tRNAGln
Interpro
IPR011012   Longin-like_dom_sf        + More
IPR002297   DNA-dir_DNA_pol_A_mt       
IPR028565   MHD       
IPR018240   Clathrin_mu_CS       
IPR012337   RNaseH-like_sf       
IPR001098   DNA-dir_DNA_pol_A_palm_dom       
IPR001392   Clathrin_mu       
IPR022775   AP_mu_sigma_su       
IPR036168   AP2_Mu_C_sf       
IPR041336   DNApol_Exo       
IPR019760   DNA-dir_DNA_pol_A_CS       
IPR006196   RNA-binding_domain_S1_IF1       
IPR001253   TIF_eIF-1A       
IPR012340   NA-bd_OB-fold       
IPR036621   Anticodon-bd_dom_sf       
IPR004154   Anticodon-bd       
IPR003837   Asp/Glu-ADT_csu       
IPR036113   Asp/Glu-ADT_sf_sub_c       
SUPFAM
SSF53098   SSF53098        + More
SSF49447   SSF49447       
SSF64356   SSF64356       
SSF50249   SSF50249       
SSF141000   SSF141000       
Gene 3D
PDB
3IKM     E-value=1.91177e-102,     Score=951

Ontologies

Topology

Subcellular location
Mitochondrion  
Length:
370
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
1.00258
Exp number, first 60 AAs:
0.4104
Total prob of N-in:
0.04234
outside
1  -  370
 
 

Population Genetic Test Statistics

Pi
238.488308
Theta
153.222244
Tajima's D
1.710939
CLR
0.320284
CSRT
0.829308534573271
Interpretation
Uncertain
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