Gene

KWMTBOMO08503  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009359

Annotation

AP-1_complex_subunit_mu-1_[Papilio_xuthus]

Location

Bomo_Chr14(+):11016174-11017886      View in EpiBrowser

Location in the cell

Golgi   Reliability : 3.264

CDS

ATGTCTTCTTCGGCTATATACATACTAGATGTCAAAGGTAAAGTTCTCATTTCGAGAAATTACCGTGGTGATGTTGATCTGGGTGTGATCGACAAATTCATGCCTTTACTGATGGAAAAGGAAGAAGAGGGAATGTTAACGCCTTTATTACAGACTAGTGAATGTACATTCGCCTATATCAAAACCAACAACTTGTACATTGTATCAACCACAAAGAAAAATGCTAATATTGCACTTGTGTTTGTATTCTTGTACAAAATTGTTGAAGTTATGACTGAGTACTTCAAAGAATTAGAGGAAGAAAGCATTCGAGACAACTTTGTGGTTATCTACGAGCTACTTGACGAACTCATAGACTTTGGATACCCTCAGACCACTGATAGCAAAATTCTACAAGAATACATCACCCAAGAAGGTCATAAACTTGAAATGCAGCCCAAAATACCCATGGCAGTTACCAATGCTGTGTCGTGGAGGTCCGAAGGCATAAAATATAGAAAGAATGAAGTCTTCTTAGATGTTATCGAGTCTGTAAATTTATTAGCCAACTCAAATGGTAATGTACTGAGGAGTGAGATTGTTGGAGCTATTAAAATGAGAGTGTACTTGTCTGGTATGCCAGAATTACGTTTAGGCTTAAACGATAAGGTCTTATTTGAAAGTACCGGCAGAGGAAAATCAAAGTCTGTGGAGTTAGAAGATGTGAAGTTCCATCAATGTGTTAGATTATCACGTTTTGAAAATGATAGGACCATCTCATTTATACCCCCTGATGGTGAATTTGAATTGATGTCATACCGACTCAACACTCATGTAAAACCTCTGATTTGGATAGAGTCTGTTATTGAGCGTCATGCTCATTCAAGAGTTGAATACATGATAAAGGCTAAGTCTCAGTTTAAGAGACGATCAACTGCGAATAACGTTGAAATCATTATACCCGTTCCTGCTGATGCTGATTCACCAAAATTCAAGACAACAATTGGTAGCGTTAAATATACACCAGAACAAAATGCGATCACATGGTCAATCAAATCATTTCCAGGAGGCAAGGAGTACTTAATGAGAGCTCATTTTGGTCTGCCTTCTGTTGAATGTGAGGAAGTTGATGGAAAGCCCCCAATTCAAGTAAAATTTGAAATACCGTATTTCACAACTTCTGGAATTCAAGTAAGATATCTGAAAATTATTGAAAAAAGTGGATACCAAGCCCTACCTTGGGTAAGGTACATTACTCAGAATGGTGATTATCAGTTAAGAACAAATTAA

Protein

MSSSAIYILDVKGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAKSQFKRRSTANNVEIIIPVPADADSPKFKTTIGSVKYTPEQNAITWSIKSFPGGKEYLMRAHFGLPSVECEEVDGKPPIQVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGDYQLRTN

Similarity

Belongs to the adaptor complexes medium subunit family.

Uniprot

A0A194Q782   A0A2W1B235   A0A2A4JWH7   A0A0N1ICB4   S4PE66   A0A212EKY2   + More
I4DJC5   A0A0L7L7E3   A0A1B6LT94   A0A1B6FF13   A0A0T6BG22   H9JIK9   A0A1B6CJD8   A0A1W4X626   A0A1Y1NI13   A0A2J7QMU4   A0A2J7QMY1   D7EIL0   A0A0K8TTJ0   A0A0P4VZC3   R4G4C8   A0A2R7X799   A0A224XD59   A0A023FAR0   A0A069DTP8   J3JW23   A0A0A9YQD1   T1E8Q4   A0A1Q3FCQ2   A0A2M4AET0   A0A182MCA1   A0A182PTP9   A0A182QP26   A0A182V538   A0A182N388   W5JJB2   A0A182KG05   A0A182U493   A0A182W1Q8   B0XEY9   A0A084WNT9   A0A182J4I7   A0A182WXD8   A0A182LQ92   Q7Q2W7   A0A182FBQ7   A0A182RVE7   A0A182HY14   Q16S47   A0A023ERX9   U5EMT5   E0VCL1   A0A1B0CLT9   A0A1S3DRR3   A0A1L8DVQ0   A0A1B0D9R8   A0A2M4BPR5   Q173K2   K7IUN8   A0A232F2G8   A0A0L7QYW5   A0A2A3E7B3   V9IJ79   A0A087ZV20   E9J5F4   A0A1J1IL99   A0A151IBD3   A0A154P3V9   A0A0J7KNX8   E2BMK0   E2AN72   A0A195BSA0   A0A158NV92   A0A026WQL8   A0A151J1E6   A0A195FX11   A0A0L0C9L2   A0A1L8ECW1   A0A1I8PXG6   T1J6Q9   A0A3B0JP30   T1D419   B4K659   B4M4B2   Q295J6   B4GDS5   A0A336KHC5   B4NB34   T1PB43   A0A0M4ER13   A0A1A9XW96   A0A1A9VFL4   A0A1B0BL73   D3TMQ4   B4QWK7   B4PUQ5   B4HJY3   B3NZQ4   A0A1W4VMV4   B3M2F9  

Pubmed

26354079    28756777    23622113    22118469    22651552    26227816    + More
19121390    28004739    18362917    19820115    26369729    27129103    25474469    26334808    22516182    23537049    25401762    26823975    20920257    23761445    24438588    20966253    12364791    14747013    17210077    17510324    24945155    26483478    20566863    20075255    28648823    21282665    20798317    21347285    24508170    30249741    26108605    24330624    17994087    18057021    15632085    25315136    20353571    17550304   

EMBL

KQ459337    KPJ01402.1    KZ150432    PZC70892.1    NWSH01000476    PCG76136.1    + More
KQ459928    KPJ19300.1    GAIX01003291    JAA89269.1    AGBW02014173    OWR42142.1    AK401393    BAM18015.1    JTDY01002447    KOB71403.1    GEBQ01013110    JAT26867.1    GECZ01021075    JAS48694.1    LJIG01000650    KRT86290.1    BABH01027089    BABH01027090    BABH01027091    BABH01027092    GEDC01023692    JAS13606.1    GEZM01001852    JAV97491.1    NEVH01013202    PNF29914.1    PNF29913.1    KQ971307    EFA12022.1    GDAI01000348    JAI17255.1    GDKW01001706    JAI54889.1    ACPB03006269    GAHY01001480    JAA76030.1    KK858185    PTY27667.1    GFTR01006079    JAW10347.1    GBBI01000583    JAC18129.1    GBGD01001589    JAC87300.1    APGK01026024    BT127441    KB740612    KB632373    AEE62403.1    ENN79999.1    ERL93769.1    GBHO01009763    GBRD01003248    GDHC01008174    JAG33841.1    JAG62573.1    JAQ10455.1    GAMD01002568    JAA99022.1    GFDL01009753    JAV25292.1    GGFK01005936    MBW39257.1    AXCM01000696    AXCN02001122    ADMH02001015    GGFL01004206    ETN64452.1    MBW68384.1    DS232883    EDS26337.1    ATLV01024718    KE525359    KFB51883.1    AXCP01005858    AAAB01008966    EAA13067.4    APCN01004467    CH477683    EAT37288.1    JXUM01141942    GAPW01001633    KQ569335    JAC11965.1    KXJ68657.1    GANO01000876    JAB58995.1    DS235059    EEB11117.1    AJWK01017609    GFDF01003576    JAV10508.1    AJVK01028425    AJVK01028426    GGFJ01005770    MBW54911.1    CH477422    EAT41228.1    AAZX01002620    NNAY01001217    OXU24699.1    KQ414687    KOC63742.1    KZ288345    PBC27590.1    JR050102    AEY61178.1    GL768153    EFZ11942.1    CVRI01000054    CRK99854.1    KQ978106    KYM96960.1    KQ434804    KZC06024.1    LBMM01004968    KMQ91949.1    GL449234    EFN83071.1    GL441103    EFN65114.1    KQ976417    KYM89895.1    ADTU01027039    KK107128    QOIP01000006    EZA58320.1    RLU22016.1    KQ980575    KYN15482.1    KQ981193    KYN45190.1    JRES01000819    KNC28139.1    GFDG01002317    JAV16482.1    JH431883    OUUW01000008    SPP83885.1    GALA01001133    JAA93719.1    CH933806    EDW14109.1    KRG00866.1    CH940652    EDW59473.1    KRF78884.1    CM000070    EAL28715.1    CH479182    EDW34586.1    UFQS01000376    UFQT01000376    SSX03342.1    SSX23708.1    CH964232    EDW80998.1    KA645952    AFP60581.1    CP012526    ALC46872.1    JXJN01016236    CCAG010001933    EZ422706    ADD18982.1    CM000364    EDX13611.1    CM000160    EDW96672.1    CH480815    EDW42867.1    CH954181    EDV49764.1    CH902617    EDV43412.1    KPU80266.1   

Proteomes

UP000053268    UP000218220    UP000053240    UP000007151    UP000037510    UP000005204    + More
UP000192223    UP000235965    UP000007266    UP000015103    UP000019118    UP000030742    UP000075883    UP000075885    UP000075886    UP000075903    UP000075884    UP000000673    UP000075881    UP000075902    UP000075920    UP000002320    UP000030765    UP000075880    UP000076407    UP000075882    UP000007062    UP000069272    UP000075900    UP000075840    UP000008820    UP000069940    UP000249989    UP000009046    UP000092461    UP000079169    UP000092462    UP000002358    UP000215335    UP000053825    UP000242457    UP000005203    UP000183832    UP000078542    UP000076502    UP000036403    UP000008237    UP000000311    UP000078540    UP000005205    UP000053097    UP000279307    UP000078492    UP000078541    UP000037069    UP000095300    UP000268350    UP000009192    UP000008792    UP000001819    UP000008744    UP000007798    UP000095301    UP000092553    UP000092443    UP000078200    UP000092460    UP000092444    UP000000304    UP000002282    UP000001292    UP000008711    UP000192221    UP000007801   

PRIDE

H9JIK9   

Pfam

PF00928   Adap_comp_sub        + More
PF01217   Clat_adaptor_s
PF18136   DNApol_Exo
PF00476   DNA_pol_A

Interpro

IPR018240   Clathrin_mu_CS        + More
IPR001392   Clathrin_mu       
IPR011012   Longin-like_dom_sf       
IPR028565   MHD       
IPR036168   AP2_Mu_C_sf       
IPR022775   AP_mu_sigma_su       
IPR002297   DNA-dir_DNA_pol_A_mt       
IPR012337   RNaseH-like_sf       
IPR001098   DNA-dir_DNA_pol_A_palm_dom       
IPR041336   DNApol_Exo       

SUPFAM

SSF49447   SSF49447        + More
SSF64356   SSF64356       
SSF53098   SSF53098       

ProteinModelPortal

A0A194Q782   A0A2W1B235   A0A2A4JWH7   A0A0N1ICB4   S4PE66   A0A212EKY2   + More
I4DJC5   A0A0L7L7E3   A0A1B6LT94   A0A1B6FF13   A0A0T6BG22   H9JIK9   A0A1B6CJD8   A0A1W4X626   A0A1Y1NI13   A0A2J7QMU4   A0A2J7QMY1   D7EIL0   A0A0K8TTJ0   A0A0P4VZC3   R4G4C8   A0A2R7X799   A0A224XD59   A0A023FAR0   A0A069DTP8   J3JW23   A0A0A9YQD1   T1E8Q4   A0A1Q3FCQ2   A0A2M4AET0   A0A182MCA1   A0A182PTP9   A0A182QP26   A0A182V538   A0A182N388   W5JJB2   A0A182KG05   A0A182U493   A0A182W1Q8   B0XEY9   A0A084WNT9   A0A182J4I7   A0A182WXD8   A0A182LQ92   Q7Q2W7   A0A182FBQ7   A0A182RVE7   A0A182HY14   Q16S47   A0A023ERX9   U5EMT5   E0VCL1   A0A1B0CLT9   A0A1S3DRR3   A0A1L8DVQ0   A0A1B0D9R8   A0A2M4BPR5   Q173K2   K7IUN8   A0A232F2G8   A0A0L7QYW5   A0A2A3E7B3   V9IJ79   A0A087ZV20   E9J5F4   A0A1J1IL99   A0A151IBD3   A0A154P3V9   A0A0J7KNX8   E2BMK0   E2AN72   A0A195BSA0   A0A158NV92   A0A026WQL8   A0A151J1E6   A0A195FX11   A0A0L0C9L2   A0A1L8ECW1   A0A1I8PXG6   T1J6Q9   A0A3B0JP30   T1D419   B4K659   B4M4B2   Q295J6   B4GDS5   A0A336KHC5   B4NB34   T1PB43   A0A0M4ER13   A0A1A9XW96   A0A1A9VFL4   A0A1B0BL73   D3TMQ4   B4QWK7   B4PUQ5   B4HJY3   B3NZQ4   A0A1W4VMV4   B3M2F9  

PDB

6DFF     E-value=0,     Score=1871

KEGG

101737012    K12393 AP-1 complex subunit mu | (RefSeq) AP-1 complex subunit mu-1

PATHWAY

04142    Lysosome - Bombyx mori (domestic silkworm)

GO

GO:0030131   GO:0006886   GO:0016192   GO:0005760   GO:0003887   GO:0003677   GO:0006260   GO:2001136   GO:0048749   GO:0008565   GO:0035976   GO:0030121   GO:0033363   GO:0006810   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR10267  

Length:

422

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.429770000000001

Exp number, first 60 AAs:

0.00256

Total prob of N-in:

0.02448

outside

1  -  422

 

 

Pi

215.324213

Theta

196.079965

Tajima's D

0.221661

CLR

1.918511

CSRT

0.43682815859207

Interpretation

Uncertain