Gene

KWMTBOMO08499

Annotation

PREDICTED:_hemicentin-1-like_[Bombyx_mori]

Location

Bomo_Chr14(-):10908855-10915203      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.858

CDS

ATGCACAACGATTTGACACAGTTAAGGGAGGGGGCGGAAATGATCCTGAACACCGCTTTGGACGAAAGCAACATCATTGATAACTTCGTATTTGTGCCATTCCACGACCCTGGAGTGGGGCCTCCGACGGTTACAAAGAGCAAAGACGTTTTTAAGACAGCTCTGAACGTGGTCAATGTGTACGGCGGCGGGGACTGCCCCGAAAACTCATTGGGTGGTATTATGATGGCACTCACGGTTAGCCATCCGAGGTCCTTTCTTTATGTGATGACTGATGCCACAGCCGCCGACCATAGACTCGTCGGGAAAGTACTCGATTTAGTTCAGCGGAAACAAAGTCAGGTAGTTTTTGTGTTGACCGGCCATTGCGATGACCTTCACAAACCCACGTACCAGGTGTACCAGCAGATAGCAGCTGCCAGCTCCGGACAAGTCTTCAATCTGAACAAAACAAGCGTTCACGAGGTACTAAATTTCGTGAAGAGTTCATTGAAAGGCAATACCGTAAATCTAGTTTCTGCGGTCAAAACGGCGGGACATAACTACACTAAAGTGATTCCAGTGGACAAATCAGTTGGAGAAGTAACGGTATCGGTGTCTGGTGTCAAGCCTCATATCAAGGTGGTCAATCCGAACGATGAAGAATTGACTGGACCACCCAAACTCGTGAAAATACTAGATCTGTCGGAGATCATGGTGGTGAAAGTTTTAGATCCAGAACCAGGTACTTGGAGCATATCAGTGGGCAGCGAGAAGGACTACTCCGTTAAAGTAGTTGGCCTCTCCAATCTCACTTTCAACTACGGCTTCTCGTTGCAAAGACCGACTTCTATGGCTGAGACCGGTTACAGACCATTGAAAAGGACCTACAACCACATGATGCTATCGCTGTCAGAAACAGATGTTCCTATATATTTAGAGTACGCCGAGATCGTCGATTTGGAAGGAAGGACTTTGTTTGAAGTGCCATTGAAATCGGATACAGAGAATAACTTGTACTGGGCTGATGCATTTGTACCGCCAGACGACTTCTTTTATATCGCTTAA

Protein

MHNDLTQLREGAEMILNTALDESNIIDNFVFVPFHDPGVGPPTVTKSKDVFKTALNVVNVYGGGDCPENSLGGIMMALTVSHPRSFLYVMTDATAADHRLVGKVLDLVQRKQSQVVFVLTGHCDDLHKPTYQVYQQIAAASSGQVFNLNKTSVHEVLNFVKSSLKGNTVNLVSAVKTAGHNYTKVIPVDKSVGEVTVSVSGVKPHIKVVNPNDEELTGPPKLVKILDLSEIMVVKVLDPEPGTWSISVGSEKDYSVKVVGLSNLTFNYGFSLQRPTSMAETGYRPLKRTYNHMMLSLSETDVPIYLEYAEIVDLEGRTLFEVPLKSDTENNLYWADAFVPPDDFFYIA

Uniprot

A0A194Q7A1   A0A2W1BAW8   A0A2A4JKA5   A0A2H1VCZ4   A0A3S2L5P2   A0A0N1PJS4   + More
A0A067QUP4   A0A2J7RQ45   A0A1B6L2U6   A0A1B6G1I6   A0A2P8XSR2   A0A1B6K6Y1   K1R2P7   A0A1B6CH72   A0A1B6BY94   A0A147AX48   A0A087U6Q6   E0VC72   A0A3P8SLR6   A0A0S7HR86   A0A0B1PN64   A0A1S3IRE7   A0A1S3KCR7   A0A0N5DYA2   V8P2G0   A0A0V1FI33   A0A3Q1B6M5   A0A3Q1FDM7   A0A3Q0S5R1   A0A0V1DY64   A0A0V1IE20   A0A3B4Z1V9   A0A401SH78   A0A0V1HBR0   A0A0V1MLS9   H3ADQ7   A0A1D5PQF5   A0A1D5PWR7   A0A3Q3AIK5   A0A1D5PMN5   A0A1L8GNR0   A0A1D5PY27   E7EY71   A0A0V1DJB6   A0A0V1A256   A0A0V0S0I9   A0A0V0VTL5   A0A0V1BJK0   A0A0V1NX02   A0A0V1KWX8   A0A0V1NWI7   A0A3S2PS86   A0A0V1DI53   A0A0V0S0T3   A0A0V1BJH5   W5M259   A0A0V1KVS9   A0A0V0WXR7   A0A0V1BK67   A0A0V0VU77   A0A0V0U9F2   A0A3Q2V180   A0A3B4G3M3   A0A0V0U8D7   A0A0V1A1Z7   A0A2I0LRH0   A0A1V4JZI6   I3JUM9   A0A2I4B518   G3NWN1   A0A1V4JZF2   F6RHB6   F6RH77   A0A3Q2CT39   A0A2U9C6G6   A0A1S3WC56   A0A3B4UEA3   A0A3Q1K5W9   A0A2D0T6P7   A0A3P9NWC9   F6QWR8   A0A3Q3W3C5   A0A1U7UYH7   A0A087Y670   A0A3B4WM49   A0A3Q3GE37   A0A3Q2GH42   E7F3V2   A0A1V4J6Y1   A0A3B3ZKJ4   U3JFF0   D7PS98   A0A1W5AD91   A0A151MI75   H3D7B6   A0A151MI82   A0A1U7S3W1   A0A3B3RV35   A0A146WQT6   A0A146WR83  

Pubmed

26354079    28756777    24845553    29403074    22992520    20566863    + More
26383154    24297900    30297745    9215903    15592404    27762356    23594743    23371554    25186727    20431018    17495919    25463417    20419147    22293439    15496914    29240929   

EMBL

KQ459337    KPJ01408.1    KZ150210    PZC72208.1    NWSH01001280    PCG71863.1    + More
ODYU01001865    SOQ38661.1    RSAL01000133    RVE46324.1    KQ459928    KPJ19296.1    KK852989    KDR12788.1    NEVH01001348    PNF42950.1    GEBQ01022123    JAT17854.1    GECZ01013596    JAS56173.1    PYGN01001410    PSN35037.1    GECU01000753    JAT06954.1    JH819016    EKC40013.1    GEDC01024593    JAS12705.1    GEDC01031072    JAS06226.1    GCES01003306    JAR83017.1    KK118472    KFM73045.1    DS235048    EEB10978.1    GBYX01437713    JAO43639.1    KN538420    KHJ41250.1    AZIM01000955    ETE68709.1    JYDT01000085    KRY85687.1    JYDR01000166    JYDS01000219    JYDV01000017    KRY66519.1    KRZ21050.1    KRZ42040.1    KRY66520.1    KRZ21051.1    KRZ42039.1    BEZZ01000266    GCC29769.1    JYDP01000098    KRZ07696.1    JYDO01000076    KRZ72618.1    AFYH01199621    AFYH01199622    AFYH01199623    AFYH01199624    AFYH01199625    AFYH01199626    AFYH01199627    AFYH01199628    AFYH01199629    AFYH01199630    AADN05000650    CM004472    OCT85460.1    BX548021    JYDI01000002    KRY61123.1    JYDQ01000041    KRY18897.1    JYDL01000051    KRX20240.1    JYDN01000009    KRX66814.1    JYDH01000036    KRY37114.1    JYDM01000086    KRZ88323.1    JYDW01000225    KRZ51458.1    KRZ88322.1    CM012445    RVE68435.1    KRY61124.1    KRX20239.1    KRY37111.1    AHAT01021685    AHAT01021686    AHAT01021687    AHAT01021688    AHAT01021689    AHAT01021690    AHAT01021691    AHAT01021692    AHAT01021693    AHAT01021694    KRZ51459.1    JYDK01000041    KRX80456.1    KRY37112.1    KRX66813.1    JYDJ01000043    KRX47395.1    KRX47397.1    KRY18895.1    AKCR02000123    PKK20021.1    LSYS01005418    OPJ77523.1    AERX01012991    AERX01012992    AERX01012993    AERX01012994    AERX01012995    OPJ77524.1    AAMC01026251    AAMC01026252    AAMC01026253    AAMC01026254    AAMC01026255    AAMC01026256    AAMC01026257    CP026254    AWP10692.1    AYCK01004151    AYCK01004152    AYCK01004153    CR391979    CR457445    LSYS01008925    OPJ67775.1    AGTO01020941    GU936668    ADI46645.1    AKHW03006099    KYO24216.1    KYO24217.1    GCES01054797    JAR31526.1    GCES01054796    JAR31527.1   

Proteomes

UP000053268    UP000218220    UP000283053    UP000053240    UP000027135    UP000235965    + More
UP000245037    UP000005408    UP000054359    UP000009046    UP000265080    UP000085678    UP000046395    UP000054995    UP000257160    UP000257200    UP000261340    UP000054632    UP000054805    UP000054826    UP000261400    UP000287033    UP000055024    UP000054843    UP000008672    UP000000539    UP000186698    UP000000437    UP000054653    UP000054783    UP000054630    UP000054681    UP000054776    UP000054924    UP000054721    UP000018468    UP000054673    UP000055048    UP000264840    UP000261460    UP000053872    UP000190648    UP000005207    UP000192220    UP000007635    UP000008143    UP000265020    UP000246464    UP000079721    UP000261420    UP000265040    UP000221080    UP000242638    UP000002280    UP000261620    UP000189704    UP000028760    UP000261360    UP000261660    UP000261520    UP000016665    UP000192224    UP000050525    UP000007303    UP000189705    UP000261540   

PRIDE

A0A1D5PWR7   

Pfam

PF00047   ig        + More
PF07679   I-set
PF07645   EGF_CA
PF00090   TSP_1
PF13895   Ig_2
PF13519   VWA_2
PF07474   G2F
PF12662   cEGF

Interpro

IPR036179   Ig-like_dom_sf        + More
IPR000742   EGF-like_dom       
IPR003598   Ig_sub2       
IPR018097   EGF_Ca-bd_CS       
IPR013032   EGF-like_CS       
IPR036383   TSP1_rpt_sf       
IPR000884   TSP1_rpt       
IPR000152   EGF-type_Asp/Asn_hydroxyl_site       
IPR013098   Ig_I-set       
IPR036465   vWFA_dom_sf       
IPR001881   EGF-like_Ca-bd_dom       
IPR013151   Immunoglobulin       
IPR013783   Ig-like_fold       
IPR007110   Ig-like_dom       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR003599   Ig_sub       
IPR013106   Ig_V-set       
IPR009138   Neural_cell_adh       
IPR002035   VWF_A       
IPR026823   cEGF       
IPR009017   GFP       
IPR006605   G2_nidogen/fibulin_G2F       
IPR032984   Hemicentin-2       
IPR006573   NHR_dom       

SUPFAM

SSF57184   SSF57184        + More
SSF48726   SSF48726       
SSF53300   SSF53300       
SSF82895   SSF82895       
SSF54511   SSF54511       

Gene 3D

2.20.100.10     2.60.40.10     3.40.50.410    

CDD

cd00255  nidG2

ProteinModelPortal

A0A194Q7A1   A0A2W1BAW8   A0A2A4JKA5   A0A2H1VCZ4   A0A3S2L5P2   A0A0N1PJS4   + More
A0A067QUP4   A0A2J7RQ45   A0A1B6L2U6   A0A1B6G1I6   A0A2P8XSR2   A0A1B6K6Y1   K1R2P7   A0A1B6CH72   A0A1B6BY94   A0A147AX48   A0A087U6Q6   E0VC72   A0A3P8SLR6   A0A0S7HR86   A0A0B1PN64   A0A1S3IRE7   A0A1S3KCR7   A0A0N5DYA2   V8P2G0   A0A0V1FI33   A0A3Q1B6M5   A0A3Q1FDM7   A0A3Q0S5R1   A0A0V1DY64   A0A0V1IE20   A0A3B4Z1V9   A0A401SH78   A0A0V1HBR0   A0A0V1MLS9   H3ADQ7   A0A1D5PQF5   A0A1D5PWR7   A0A3Q3AIK5   A0A1D5PMN5   A0A1L8GNR0   A0A1D5PY27   E7EY71   A0A0V1DJB6   A0A0V1A256   A0A0V0S0I9   A0A0V0VTL5   A0A0V1BJK0   A0A0V1NX02   A0A0V1KWX8   A0A0V1NWI7   A0A3S2PS86   A0A0V1DI53   A0A0V0S0T3   A0A0V1BJH5   W5M259   A0A0V1KVS9   A0A0V0WXR7   A0A0V1BK67   A0A0V0VU77   A0A0V0U9F2   A0A3Q2V180   A0A3B4G3M3   A0A0V0U8D7   A0A0V1A1Z7   A0A2I0LRH0   A0A1V4JZI6   I3JUM9   A0A2I4B518   G3NWN1   A0A1V4JZF2   F6RHB6   F6RH77   A0A3Q2CT39   A0A2U9C6G6   A0A1S3WC56   A0A3B4UEA3   A0A3Q1K5W9   A0A2D0T6P7   A0A3P9NWC9   F6QWR8   A0A3Q3W3C5   A0A1U7UYH7   A0A087Y670   A0A3B4WM49   A0A3Q3GE37   A0A3Q2GH42   E7F3V2   A0A1V4J6Y1   A0A3B3ZKJ4   U3JFF0   D7PS98   A0A1W5AD91   A0A151MI75   H3D7B6   A0A151MI82   A0A1U7S3W1   A0A3B3RV35   A0A146WQT6   A0A146WR83  

KEGG

105841280    no KO assigned | (RefSeq) hemicentin-1-like

GO

GO:0005509   GO:0007155   GO:0016020   GO:0016021   GO:0071711   GO:0033334   GO:0009617   GO:0030054   GO:0005938   GO:0005604   GO:0008307   GO:0030198   GO:0006936   GO:0031430   GO:0055008   GO:0030241   GO:0030018   GO:0030017   GO:0090497   GO:0035122   GO:0055003   GO:0005865   GO:0048739   GO:0045214   GO:0051015   GO:0071688   GO:0043589   GO:0030240   GO:0051371   GO:0007157   GO:0038023   GO:0007156   GO:0005913   GO:0050839   GO:0042803  

PANTHER

PTHR45889:SF4  

Length:

348

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0370900000000001

Exp number, first 60 AAs:

0.00586

Total prob of N-in:

0.02233

outside

1  -  348

 

 

Pi

294.796469

Theta

168.403111

Tajima's D

2.791352

CLR

0.254821

CSRT

0.967751612419379

Interpretation

Uncertain