Gene

KWMTBOMO08490

Pre Gene Modal

BGIBMGA009345

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_SH3RF1?_partial_[Bombyx_mori]

Location

Bomo_Chr14(-):10763845-10766653      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 0.895

CDS

ATGTTTCCAATCACTTTTGTGCAGGTCGTCGTACAATTGCCGGCGGCGACGGCGCTCTGCAAAGCGCTCTACGACTTCCGAATGTCAGCCCCCGACGAGGAAGGGTGTCTCGCTTTTGATAAAGGAGCTATAATAACGGTGCACCGTCGCGTCGACGACAACTGGGCCGAGGGTAGACTAGAGAACCGAGTCGGCATCTTCCCTATAGCGTTCGTTGAACTCAACCAGGCGGCCAGGCAGCTTATAAACTGGTAA

Protein

MFPITFVQVVVQLPAATALCKALYDFRMSAPDEEGCLAFDKGAIITVHRRVDDNWAEGRLENRVGIFPIAFVELNQAARQLINW

Uniprot

H9JIJ5   A0A2A4JVA7   A0A2W1BHC0   A0A2H1VB15   A0A194Q7P6   A0A3S2PAZ2   + More
A0A0N1IB78   A0A2Z5U744   A0A212FC75   A0A0A9YFI5   A0A0A9ZHG1   A0A146MBF6   A0A146LV86   A0A1Y1N013   A0A1Y1N334   A0A1Y1MWB4   A0A1Y1MXV0   A0A1Y1N137   A0A067QV46   V5H0E8   U4UW46   K7IZH8   A0A232ESB6   A0A0C9QEH9   A0A1B6C9R0   E9GFR4   A0A1B6DS57   A0A0C9RY64   A0A3Q0JL21   A0A2H8TR23   A0A1B6KK74   A0A2S2PMP5   A0A2H8TKI8   A0A0M8ZRM1   A0A0L0CHA6   A0A0L7QL56   A0A0P6H3H7   A0A0P5V892   J9JMA6   A0A0P5V6K0   A0A0N8A0C7   F4X8N0   A0A0P5RKL3   A0A0P4YLU6   A0A0P5CKM4   A0A0P5BC70   A0A195FCY5   A0A0P5YEQ6   A0A195DRF7   A0A158NBJ3   A0A026W697   A0A0P5US48   A0A195B9Q5   A0A2A3ER31   E2C3Z2   A0A0P5B857   A0A0P6H3Y2   A0A0P6H6H7   A0A0J7L9L3   A0A0N8DAB1   A0A0P5N6N3   A0A0P6BQU1   A0A0P5KL42   A0A2S2QRC7   T1PL82   E2AZ51   A0A1I8MQE9   A0A088AV15   A0A0P5MWP8   A0A0P5Y7A9   A0A0P5ZJJ1   A0A0P6CQX0   A0A1W4X521   A0A1W4WU68   A0A0P5Z3Y7   A0A0P4YVR2   N6TU36   A0A2P8Y085   A0A154PMB9   A0A336MVK6   A0A336MQM2   T1J1Q5   A0A3R7PCN7   A0A147BPY9   L7M9F8   A0A1A9XWU8   A0A1B0BAZ8   A0A0N7ZAR9   A0A0P4W3I8   D2A024   A0A023EYG9   A0A1A9WDT5   A0A1B6HZK8   A0A1B6GN62   U5EPL2   E0VCK3   W8BDM8   A0A2M4CZA9   A0A2M4BDP8   A0A2M4AL44  

Pubmed

19121390    28756777    26354079    22118469    25401762    26823975    + More
28004739    24845553    23537049    20075255    28648823    21292972    26108605    21719571    21347285    24508170    30249741    20798317    25315136    29403074    29652888    25576852    18362917    19820115    25474469    20566863    24495485   

EMBL

BABH01027061    BABH01027062    BABH01027063    BABH01027064    BABH01027065    NWSH01000509    + More
PCG75967.1    KZ150210    PZC72200.1    ODYU01001596    SOQ38040.1    KQ459337    KPJ01414.1    RSAL01000133    RVE46318.1    KQ460144    KPJ17464.1    AP017487    BBB06748.1    AGBW02009209    OWR51346.1    GBHO01011777    JAG31827.1    GBHO01001924    JAG41680.1    GDHC01002064    JAQ16565.1    GDHC01007008    JAQ11621.1    GEZM01018916    GEZM01018914    JAV89965.1    GEZM01018911    JAV89967.1    GEZM01018915    JAV89964.1    GEZM01018910    JAV89968.1    GEZM01018912    JAV89966.1    KK853227    KDR09658.1    GALX01002153    JAB66313.1    KB632390    ERL94486.1    NNAY01002453    OXU21241.1    GBYB01012868    JAG82635.1    GEDC01027071    JAS10227.1    GL732542    EFX81681.1    GEDC01008794    JAS28504.1    GBYB01012866    JAG82633.1    GFXV01004247    MBW16052.1    GEBQ01028119    JAT11858.1    GGMR01018112    MBY30731.1    GFXV01002735    MBW14540.1    KQ435883    KOX69695.1    JRES01000408    KNC31621.1    KQ414934    KOC59261.1    GDIQ01035304    JAN59433.1    GDIP01104180    JAL99534.1    ABLF02033982    ABLF02033992    GDIP01104181    JAL99533.1    GDIP01194921    GDIP01193534    JAJ28481.1    GL888932    EGI57299.1    GDIQ01118480    JAL33246.1    GDIP01226968    JAI96433.1    GDIP01168770    JAJ54632.1    GDIP01186925    JAJ36477.1    KQ981673    KYN38251.1    GDIP01092590    GDIP01060634    GDIP01050895    LRGB01001348    JAM43081.1    KZS12865.1    KQ980581    KYN15392.1    ADTU01011118    KK107453    QOIP01000004    EZA50569.1    RLU23826.1    GDIP01109178    JAL94536.1    KQ976540    KYM81261.1    KZ288192    PBC34225.1    GL452364    EFN77378.1    GDIP01188975    JAJ34427.1    GDIQ01024455    JAN70282.1    GDIQ01033713    JAN61024.1    LBMM01000150    KMR04725.1    GDIP01053359    JAM50356.1    GDIQ01150359    JAL01367.1    GDIP01011118    JAM92597.1    GDIQ01182515    GDIQ01182514    JAK69211.1    GGMS01011088    MBY80291.1    KA648875    AFP63504.1    GL444081    EFN61288.1    GDIQ01152417    JAK99308.1    GDIP01075136    JAM28579.1    GDIP01056283    JAM47432.1    GDIQ01088381    JAN06356.1    GDIP01049282    JAM54433.1    GDIP01232919    JAI90482.1    APGK01054573    KB741250    ENN71906.1    PYGN01001092    PSN37671.1    KQ434954    KZC12614.1    UFQS01002855    UFQT01002855    SSX14768.1    SSX34160.1    UFQS01001439    UFQT01001439    SSX10899.1    SSX30577.1    JH431789    QCYY01000894    ROT82025.1    GEGO01002590    JAR92814.1    GACK01005251    JAA59783.1    JXJN01011233    GDRN01095054    GDRN01095053    JAI59616.1    GDRN01095058    JAI59614.1    KQ971338    EFA02827.2    GBBI01004565    JAC14147.1    GECU01027589    JAS80117.1    GECZ01005887    JAS63882.1    GANO01000127    JAB59744.1    DS235055    EEB11109.1    GAMC01018676    GAMC01018675    JAB87879.1    GGFL01006469    MBW70647.1    GGFJ01002038    MBW51179.1    GGFK01008146    MBW41467.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000283053    UP000053240    UP000007151    + More
UP000027135    UP000030742    UP000002358    UP000215335    UP000000305    UP000079169    UP000053105    UP000037069    UP000053825    UP000007819    UP000007755    UP000078541    UP000076858    UP000078492    UP000005205    UP000053097    UP000279307    UP000078540    UP000242457    UP000008237    UP000036403    UP000000311    UP000095301    UP000005203    UP000192223    UP000019118    UP000245037    UP000076502    UP000283509    UP000092443    UP000092460    UP000007266    UP000091820    UP000009046   

PRIDE

H9JIJ5   

Pfam

PF07653   SH3_2        + More
PF00018   SH3_1
PF14604   SH3_9
PF00097   zf-C3HC4
PF13639   zf-RING_2

Interpro

IPR001452   SH3_domain        + More
IPR028502   SH3RF1/SH3RF3       
IPR036028   SH3-like_dom_sf       
IPR035816   SH3RF1/SH3RF3_SH3_4       
IPR013083   Znf_RING/FYVE/PHD       
IPR017907   Znf_RING_CS       
IPR001841   Znf_RING       
IPR018957   Znf_C3HC4_RING-type       
IPR028511   SH3RF2       

SUPFAM

SSF50044   SSF50044       

Gene 3D

3.30.40.10    

CDD

cd11785  SH3_SH3RF_C

ProteinModelPortal

H9JIJ5   A0A2A4JVA7   A0A2W1BHC0   A0A2H1VB15   A0A194Q7P6   A0A3S2PAZ2   + More
A0A0N1IB78   A0A2Z5U744   A0A212FC75   A0A0A9YFI5   A0A0A9ZHG1   A0A146MBF6   A0A146LV86   A0A1Y1N013   A0A1Y1N334   A0A1Y1MWB4   A0A1Y1MXV0   A0A1Y1N137   A0A067QV46   V5H0E8   U4UW46   K7IZH8   A0A232ESB6   A0A0C9QEH9   A0A1B6C9R0   E9GFR4   A0A1B6DS57   A0A0C9RY64   A0A3Q0JL21   A0A2H8TR23   A0A1B6KK74   A0A2S2PMP5   A0A2H8TKI8   A0A0M8ZRM1   A0A0L0CHA6   A0A0L7QL56   A0A0P6H3H7   A0A0P5V892   J9JMA6   A0A0P5V6K0   A0A0N8A0C7   F4X8N0   A0A0P5RKL3   A0A0P4YLU6   A0A0P5CKM4   A0A0P5BC70   A0A195FCY5   A0A0P5YEQ6   A0A195DRF7   A0A158NBJ3   A0A026W697   A0A0P5US48   A0A195B9Q5   A0A2A3ER31   E2C3Z2   A0A0P5B857   A0A0P6H3Y2   A0A0P6H6H7   A0A0J7L9L3   A0A0N8DAB1   A0A0P5N6N3   A0A0P6BQU1   A0A0P5KL42   A0A2S2QRC7   T1PL82   E2AZ51   A0A1I8MQE9   A0A088AV15   A0A0P5MWP8   A0A0P5Y7A9   A0A0P5ZJJ1   A0A0P6CQX0   A0A1W4X521   A0A1W4WU68   A0A0P5Z3Y7   A0A0P4YVR2   N6TU36   A0A2P8Y085   A0A154PMB9   A0A336MVK6   A0A336MQM2   T1J1Q5   A0A3R7PCN7   A0A147BPY9   L7M9F8   A0A1A9XWU8   A0A1B0BAZ8   A0A0N7ZAR9   A0A0P4W3I8   D2A024   A0A023EYG9   A0A1A9WDT5   A0A1B6HZK8   A0A1B6GN62   U5EPL2   E0VCK3   W8BDM8   A0A2M4CZA9   A0A2M4BDP8   A0A2M4AL44  

PDB

3IQL     E-value=3.85164e-10,     Score=148

KEGG

101735906    K12171 E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase SH3RF1

GO

GO:0016874   GO:0046872   GO:0005515   GO:0008270   GO:0015074   GO:0006370   GO:0019012   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR14167:SF62   PTHR14167:SF60  

Length:

84

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.549709999999999

Exp number, first 60 AAs:

0.54536

Total prob of N-in:

0.10803

outside

1  -  84

 

 

Pi

279.820181

Theta

174.466186

Tajima's D

2.221513

CLR

0.092296

CSRT

0.914954252287386

Interpretation

Uncertain