Silkworm Genome Informatics Database

Gene

KWMTBOMO08489

Pre Gene Modal

BGIBMGA009345

Annotation

PREDICTED:_E3_ubiquitin-protein_ligase_SH3RF1?_partial_[Bombyx_mori]

Location

Bomo_Chr14(-):10748516-10763293 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.82

CDS

ATGTCGGTCTCTACACCGGCGACGTCACAGGGCAACTACCAGAACATGGCAACGATGACCCAATCCCACCCCAACTACCCGACAGCGATGCTGGTCCAACAGCCGCAGACGCTGGGCCCCCACGCGGGCCTGCTCTCGACGCCGCCGCGGAACATTCTCGAACAGCAGTCGAAGCACGCGATAGATCTGATACACTTTAGCAACAAGGGCCACGGCGTGCTGGGCCTGCAGAGCGTGTCCCGCATCGGCGACGTCAACTACGACAGGACGCGCGTCAAGTTCGACTACAATTCGACTCCCGCGGACTCGACGTACCAAAACGTGCGCCCCCCCGTCTCCAACAACCCCAGCTCGGACTCCAGTTCCAGTATGAACACTCCGTCGGTGGGCGTCAGTTCCAACACCACGCCCAACACCAGCTCTGACACGAGCACCTGTGAGAGCAACGAGCCCAGCCTGCCGAGTTCCCCGGACAACAACACCGACCGGACCACCGCGGTCAACGGGCCCGACCCGGATCCTGACCGACGCGAACCTTCACTAAACACCTCGATGGGAATATTGAGCCTGAACGAGAGCTCCACCGCAACAAACACGTCGCTCAACGTCAGCCTGCCCCCTTCAGAGAGTCCCAAACCGAACGCTTCGAATGAAGAGGTACAGGAAACGGAAGAAGTCAGACTAGACGCCCCGTCTTCCAGCAAAGTAGTGATCCGATCGAGCGGGCCGGACTCCCTGCTGAACTTCGGGCTCGGTCTGCAGGCGGCGCTGTCGCCATCTCAAGGCCAGGAGGGGAACTACGTGGTGTCGAGATCGCACAGAGACCCTCACAGGGAGAGGGAGAAAAGACACAGTCTCACGCCCTCGACGCATTTGCAGGCCAATCATAATACGCCGAATAGACATTCAGCGGAGATAGTGGCGACCAGTCTGCTGGACGCGGCGCCGGTCGGGGGGCCGTGCGGGGGGTTGGGCGGGGGGACGGACGCGCGCGCCCGGCGGCGGCGCCGCTCCCGCAGCAGCGAGCGCCCGCTCCCCGCGCACTACGTAGCGCTGTACCCCTACCACCCGCAGAAACCGGACGAACTAGAACTCACCAAAGGAGTGGTGTACACCGTGACGGAGCGATGTCGCGACGGCTGGTACAAAGGATTTTCGGAGCGAAGTCAACGGGCTGGAGTGTTCCCCGGGAACTACGTAGCGCCGCACCGAGCCAAGCACGACAAGAGCGTAGTGAGTACGGTGGGCACGGTGCCGAGCCTGAAGGCGATGACGTCAGGGCCTCCCCCTCCCCCGGACGCCCCGCCGCGGGCCCCCTCTCCCTCCCCGCTGCTCTCTGCGGCACAGCCTTTGACGTACCCTTGGAATTCGACGACGCTATGTATGCAACAAACAACGCCTAGATCTGAAAAGTCGAGGGACAAAACGAAAGCGGAGAAGTCTTCTATATCGAGCGGCGTCAGTCTCATGAAGCGTTGGGCGGCCATGAAGAAGTGCAAGTCTCCGCCGCCGGCCGCAGCGTACAGCATCGACAACCCCGTGTTCGAGGACGGGCCCTCGCGCTTGCTAGACGTGCCGCTGCACCCGCACCACGTCAGGTCGGGGTCGTGCCCCTCGCAGCTGCTGCGTGCGCTCCCCGCCGCCGACAGACGACTCCGCGCCCCCGCCGCACCACTCGCGCACAGATCTACAAATGAGAGTCCGTGGCAAACTCAGCACAGGAAATCGCAATCTCTCGACGTCACCGCCGCTAGGAAAGACAGACACCATTCGCAAACCGTTAAAGAAAGATACCGCTGTATAGTTCCGTACCCTCCCAACTCGGAGTATGAGTTAGAATTGAAAGTGGACGACATAGTGATAGTGTCGAAGAAGCGCGGCGACGGCTGGTACAAGGGAACGTTGCAACGCACAGGTCGCACCGGTCTATTCCCGGCCTCGTTTGTGCAAAGCTGCCCTCACGAATGA

Protein

MSVSTPATSQGNYQNMATMTQSHPNYPTAMLVQQPQTLGPHAGLLSTPPRNILEQQSKHAIDLIHFSNKGHGVLGLQSVSRIGDVNYDRTRVKFDYNSTPADSTYQNVRPPVSNNPSSDSSSSMNTPSVGVSSNTTPNTSSDTSTCESNEPSLPSSPDNNTDRTTAVNGPDPDPDRREPSLNTSMGILSLNESSTATNTSLNVSLPPSESPKPNASNEEVQETEEVRLDAPSSSKVVIRSSGPDSLLNFGLGLQAALSPSQGQEGNYVVSRSHRDPHREREKRHSLTPSTHLQANHNTPNRHSAEIVATSLLDAAPVGGPCGGLGGGTDARARRRRRSRSSERPLPAHYVALYPYHPQKPDELELTKGVVYTVTERCRDGWYKGFSERSQRAGVFPGNYVAPHRAKHDKSVVSTVGTVPSLKAMTSGPPPPPDAPPRAPSPSPLLSAAQPLTYPWNSTTLCMQQTTPRSEKSRDKTKAEKSSISSGVSLMKRWAAMKKCKSPPPAAAYSIDNPVFEDGPSRLLDVPLHPHHVRSGSCPSQLLRALPAADRRLRAPAAPLAHRSTNESPWQTQHRKSQSLDVTAARKDRHHSQTVKERYRCIVPYPPNSEYELELKVDDIVIVSKKRGDGWYKGTLQRTGRTGLFPASFVQSCPHE

Uniprot

H9JIJ5 A0A2H1VB15 A0A194Q7P6 A0A3S2PAZ2 A0A2A4JVA7 A0A212EYG7 + More
A0A2W1BHC0 A0A0N0P9I2 A0A0L7LJJ2 A0A212FC75

Pubmed

19121390 26354079 22118469 28756777 26227816

EMBL

BABH01027061 BABH01027062 BABH01027063 BABH01027064 BABH01027065 ODYU01001596 + More
SOQ38040.1 KQ459337 KPJ01414.1 RSAL01000133 RVE46318.1 NWSH01000509 PCG75967.1 AGBW02011520 OWR46532.1 KZ150210 PZC72200.1 KQ459390 KPJ01118.1 JTDY01000869 KOB75617.1 AGBW02009209 OWR51346.1

Proteomes

UP000005204 UP000053268 UP000283053 UP000218220 UP000007151 UP000037510 + More

PRIDE

H9JIJ5

Pfam

PF07653   SH3_2        + More
PF00018   SH3_1
PF14604   SH3_9
PF00097   zf-C3HC4

Interpro

IPR001452   SH3_domain        + More
IPR028502   SH3RF1/SH3RF3
IPR036028   SH3-like_dom_sf
IPR035816   SH3RF1/SH3RF3_SH3_4
IPR013083   Znf_RING/FYVE/PHD
IPR017907   Znf_RING_CS
IPR001841   Znf_RING
IPR018957   Znf_C3HC4_RING-type

SUPFAM

SSF50044 SSF50044

Gene 3D

3.30.40.10

CDD

cd11785 SH3_SH3RF_C

ProteinModelPortal

H9JIJ5 A0A2H1VB15 A0A194Q7P6 A0A3S2PAZ2 A0A2A4JVA7 A0A212EYG7 + More
A0A2W1BHC0 A0A0N0P9I2 A0A0L7LJJ2 A0A212FC75

PDB

2LJ0 E-value=3.08724e-11, Score=167

KEGG

101735906 K12171 E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase SH3RF1

GO

GO:0016874 GO:0046872 GO:0005515 GO:0008270 GO:0015074 GO:0006370 GO:0019012 GO:0051603 GO:0030145 GO:0006412 GO:0016876 GO:0043039

PANTHER

PTHR14167:SF62

Length:

655

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00373

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.00041

outside

1 - 655

Pi

212.006022

Theta

23.689126

Tajima's D

0.818928

CLR

0.894779

CSRT

0.615969201539923

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics