SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08482
Pre Gene Modal
BGIBMGA009349
Annotation
PREDICTED:_uncharacterized_protein_K02A2.6-like_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 2.239
 

Sequence

CDS
ATGTCTTTCGGAAATTTAATTAATTTCGATCATAACTCGCAAACTTGGAAGACTTGGAGATGCAGACTCACACAGTGGTTCATCGCGAACGACATTAACGTGGTGAAAGATCCAGCAGGAGTCAAAAGACGGGCCATATTGCTTAGCACACTCAGCGAATCTACCTACAAACTGGCAGCTGATCTCGTGTTGCCTAAAGAAGTTCAAGAAGTACCATACGAAGACATAGTTAGTGCCTTGGATAATCATTTCACTCCAAAATCAGTGGGCTTTGGCGAGCGTCATCATTTTTATGCCGCCACACAACTACCCCAGGAGTCACCATCACAGTGGGCTGCGAGGCTACGAGGTCTCACTTCCCAATGTAACTTCAGCAATGTAGAAGAAGCATTAAGAGATCGATTCATTATGGGTATGCTGCCGGGCGTGGAGAAAGAAAAAATGTACGTGCAGGAGCTGGCCGGGTTGACCTTCGCCAGGGCTGTGGAGCTGACCGAGAGCTTGCGCAGCGCCCGCTCGGCTGCTGCTGCAAGCGCTGCTACCGAGGCTGTCGTTACAGAGCTGTACAAAATAGGCAAACGTTCTCCGACTAGTGTACCTCAAAGTGCAAAAGTGAAGTGTTCCGTGTGTGGTTATTCGAATCACAAAGCCGCGGAGTGTCGTTTTGCGAGTTACACTTGTAGGAAGTGCAACGAAAAAGGGCATTTGCGTAGAATGTGCAAAAGAGTCAGTTATGTTGTAACGGAGGAGAACGATGGAGGTGACGATGACGACGGTAAAGTTTATAACATTCGATCTTTTCGAGGTGAACCATTAATCGAAGCCGTGTGTGTCAATGGTATTAAAATTAACTTTGAGATTGATAGTGGGTCAGCTGTTACCGTTATGTCCCACGATACATATAACGAACATTTTAAAAACATTCCCTTATTAAGCACAAATAAGAAGTTATTAAGTTACTCCGGTGACGTGTTAGGTTGCGCCGGTCGCGCTCAGTTGTTAGTGGAGTGGCGGGGTCGCACGCGCCAGCTCGACGTGTACGTGGTGCGCGACGGTGGACCATCTTTACTGGGCCGCGACTTCATCGCGCAATTTGAACTGCAGCTAGCGCCCGTATATAAATGTGCCACTACCCGAGACACGTTGAAATTAATACAGGAACAATATCCCGCCGTGTTCTCGGACAAGCTAGGTCAATTCAACAAATATAAAGTTAATTTGAGATTAAAAGAAAATGCTCATACTATATTTTTTAAACCACGGCCGGTCGCATTTGCTCTGCGTGAAAAAGTAGAAAAAGAGATAAACCGTTTAGTGGGACTGGGAGTACTCCGACCAGTCGAGCATTCCGACTACGCGTCACCAATAGTTCCGGTACTGAAACGTGACGGTTCGGTCCGTATCTGCGCGGACTACTCTGTAACTATAAACAAGCAGTTAGTTGTGGAACAGTATCCGTTGCCTACCGTAAACGAGTTGTTTTCTAAACTATACGGAGGCCAGAAATTTACTAAATTAGATTTGTCAATGGCCTACGGACAGTTTTGTCTGGATGAAGAATCCCAAAAGGTAACTTGTATCAATACGCATAAAGGGATATTCGCGTATACGCGTTTGGTATTCGGGTTAGCTAGTGGGCCATCAATTTTCCAGCGAGCCATGGATACAGTGCTAGCGGGCCTGGACGGCACGCTGTGTTTATTGGACGATGTGCTCATAACGGGTCGCAATGACTCTGAACATCTTGAGAGACTGCATCAGGTCCTACAACGGTTGCAAGACGCAGGATTTGTTCTACAAAAGTCTAAATGTCAGTTCTTTCAAGATGAGATTAATTATTTAGGGTCTACCATTAATAAAGAGGGGCTAAGAAAATCACCCGATAAAATAGAAGCAATATTAAAGGCACCGGCGCCTACGAATGTTAGTCAACTACGATCTTTCTTAGGCTTAGTAAATTATTATAGAAATTTTGTACCGAATGCATCTTGTATTCTCGGGCCATTATACGAACTTTTAAAAAAAGAAACAAAGTGGCGTTGGTCTAAGTTACATGATAAGGCGTTTAATGAAATAAAGAAATTGTTAGCATCCGATAATGTATTGGCCCATTTTAATCCTAATGCAAATATAATTCTCACTGTAGACGCGTCGCCCAATGGAGTAGGTGCTATTCTATCACAGGTGAGTTCCGATGGCCAGGAAAAACCTATCTCTTTCGCTTCGCGCACGCTCAACGACGCCGAGAAAAGGTACTCACAAATCCAAAAGGAAGCAACCGCGATTATATTTGGTGTTCGTCGATTTCATCAATATTTGTACGGCAGGTCAAATCCATTTATACTAAGGACGGACCACAAACCGCTGCTCTCAATATTTGGCCCACAACGAGGCATCCCAGAAGTCTCGGCAAACAGACTTCAAAGATATGCAATTTTTCTTAGTGGTTATAATTATTATTATGTAATCGAGTACGTGAAGAGTGCAGATAATAGTGCGGACTATCTGTCTCGTGCGAGTCTACCGGCCGGCGCGGGCGCGTGCGGTGGTCGAGGCGGGGGGACCAGGCGCGGAGCGGGAGCGGTCGATGTCGATGCGTTCGACAGCGCCTCTTATGTTTGCTTCGCAGTGCAAGGCGCACTCCCGATATCGGTGACTGAATTACGTAACGCAACCAGCAATGATAGCATATTACGTGAAGTCATCAAATATATTCAAAACGGATGGCCTAAAAAAATTATCAACGCAGAAGTTAAGCCTTACTACTTATGTAGATTGCAACTGTCCGTTGAAAATGGTTGCGTTATGAGGGGCCATAAAGTGGTGATACCAGGAAGTTTGCGTCACCGTATTTTAACAGAGTTGCATACCTCACACATGGGCATAGTTAAAACAAAGGCTGAAGCTCGATCTCGATGTTGGTTTCCAGGCTTAGACGACGCCTTAGAAAATATGATTAGCTCATGTGAGGTGTGTATGCAGCTACGACCGACTCCGCCGCGCACTCCGGTGTGCCCGTGGGAATACCCCCCACAACCCTTTTACCGTGTACACTTAGACTTTCTAGGTCCGCTGAATGGTCGGATGTACCTGGTCCTAGTAGACGCGTACTCCAAGTGGCTTGAGGTGTACGAGATGGCTTCCACAACTACTAGTGCGGTCATTGAAAGAATGTATGAGTACATGTCCAGATACGGATTGCCTCATACGGTAGTTACGGATAACGGTGTGATATTAAAGAGAATTGGTAAAAACGTATACATTGTAAAAGACTTTAAATCTTCAATACAACTCAAGAGGCACTCTGAACAGCTGTTTTCGTGCAAAACCAAATGTGGTGCCAGTCAAACCTGGGCGGATGACTTGAGCGGTTCTATTGCTCCAACCGTTGCTAGTCCGGCAACGGGGATGATGTCGTCGCCTTGTGATGATAGTAGCGGCATCGGACCTCACACACACGACGAAGAGAGTGCAACTGAGGAGAGGGAAGAGGAGAGCGGCCGCATTGGAATCTCTAGTGCATGTGACAATCAGCCGAATCGGGAGTCACCGGAACCGAGTCACGTAACTGTCACGCGAGGAGTGCGTCGACCCGCGCAGTCTGAAGACTCTGAAGAAGGGGATCTGTTCTTCGAGGCAGAGGAGGCGAGCTTGGAGCCCCAAAATATTAGGGAGCCCAGGTTTCCTAAACGTAACCGTCCTAGGCCAATATGTCCCATCTTCGAGAGTCAAAGAACGGTAGCACTAGTCTCTCCAGAATCAATTGTCACCGAACGTAAGTTTGATACAGCAATTAGGCTATCACAAGTTGTCTCCTTTAAGCGGAGGCTAGAAGAAGGTCAATCCACATTGGATGATAAAATCTTGATAGAAACCTTGAGGAGACAGGGTGTCAAGGCACAAGATCTGATAATTGACCATGCTGTGTTCCAGGCTGTTACAAGAAGTTCCAGGCTGTTACAAGAAGTTCTAGCATCTGGCGGCATCTAG
Protein
MSFGNLINFDHNSQTWKTWRCRLTQWFIANDINVVKDPAGVKRRAILLSTLSESTYKLAADLVLPKEVQEVPYEDIVSALDNHFTPKSVGFGERHHFYAATQLPQESPSQWAARLRGLTSQCNFSNVEEALRDRFIMGMLPGVEKEKMYVQELAGLTFARAVELTESLRSARSAAAASAATEAVVTELYKIGKRSPTSVPQSAKVKCSVCGYSNHKAAECRFASYTCRKCNEKGHLRRMCKRVSYVVTEENDGGDDDDGKVYNIRSFRGEPLIEAVCVNGIKINFEIDSGSAVTVMSHDTYNEHFKNIPLLSTNKKLLSYSGDVLGCAGRAQLLVEWRGRTRQLDVYVVRDGGPSLLGRDFIAQFELQLAPVYKCATTRDTLKLIQEQYPAVFSDKLGQFNKYKVNLRLKENAHTIFFKPRPVAFALREKVEKEINRLVGLGVLRPVEHSDYASPIVPVLKRDGSVRICADYSVTINKQLVVEQYPLPTVNELFSKLYGGQKFTKLDLSMAYGQFCLDEESQKVTCINTHKGIFAYTRLVFGLASGPSIFQRAMDTVLAGLDGTLCLLDDVLITGRNDSEHLERLHQVLQRLQDAGFVLQKSKCQFFQDEINYLGSTINKEGLRKSPDKIEAILKAPAPTNVSQLRSFLGLVNYYRNFVPNASCILGPLYELLKKETKWRWSKLHDKAFNEIKKLLASDNVLAHFNPNANIILTVDASPNGVGAILSQVSSDGQEKPISFASRTLNDAEKRYSQIQKEATAIIFGVRRFHQYLYGRSNPFILRTDHKPLLSIFGPQRGIPEVSANRLQRYAIFLSGYNYYYVIEYVKSADNSADYLSRASLPAGAGACGGRGGGTRRGAGAVDVDAFDSASYVCFAVQGALPISVTELRNATSNDSILREVIKYIQNGWPKKIINAEVKPYYLCRLQLSVENGCVMRGHKVVIPGSLRHRILTELHTSHMGIVKTKAEARSRCWFPGLDDALENMISSCEVCMQLRPTPPRTPVCPWEYPPQPFYRVHLDFLGPLNGRMYLVLVDAYSKWLEVYEMASTTTSAVIERMYEYMSRYGLPHTVVTDNGVILKRIGKNVYIVKDFKSSIQLKRHSEQLFSCKTKCGASQTWADDLSGSIAPTVASPATGMMSSPCDDSSGIGPHTHDEESATEEREEESGRIGISSACDNQPNRESPEPSHVTVTRGVRRPAQSEDSEEGDLFFEAEEASLEPQNIREPRFPKRNRPRPICPIFESQRTVALVSPESIVTERKFDTAIRLSQVVSFKRRLEEGQSTLDDKILIETLRRQGVKAQDLIIDHAVFQAVTRSSRLLQEVLASGGI

Summary

EMBL
AB126055    BAD86655.1    GEZM01092768    GEZM01092767    JAV56467.1    GEZM01009753    + More
JAV94337.1    GEFM01006397    JAP69399.1    ABLF02006499    ABLF02041879    GDHC01002706    JAQ15923.1    RSAL01000130    RVE46453.1    GEDC01007675    GEDC01003661    JAS29623.1    JAS33637.1    GGMR01020219    MBY32838.1    GEDC01023506    GEDC01023205    JAS13792.1    JAS14093.1    GEZM01085308    JAV60010.1    ABLF02016687    ABLF02016690    GEZM01014356    JAV92133.1    GGMR01010825    MBY23444.1    NIVC01001377    PAA68677.1    ABLF02065955    NIVC01001652    PAA65446.1    GEZM01050895    JAV75318.1    GEGO01002490    JAR92914.1    AAZX01023237    GGMR01017626    MBY30245.1    NIVC01000183    PAA88548.1    HAEH01013823    SBR98409.1    GECU01037588    JAS70118.1    ABLF02011319    ABLF02014651    ABLF02041920    NIVC01001575    PAA66240.1    JYDP01000057    KRZ10689.1    JYDP01000208    KRZ03007.1    JYDO01000236    KRZ66548.1    JYDL01000058    KRX19511.1    ABLF02012827    ABLF02012828    ABLF02015552    ABLF02041322    GEZM01042258    JAV80005.1    JYDQ01000124    KRY14116.1    JYDQ01000346    KRY08270.1    JYDP01000327    KRZ01162.1    HAEB01010230    SBQ56757.1    ABLF02038551    ABLF02038554    ABLF02042419    JYDH01000010    KRY40903.1    KL367545    KFD65077.1    HAAD01006009    CDG72241.1    JYDN01000036    KRX62850.1    GEZM01043158    JAV79264.1    JYDN01000181    KRX54093.1    GFWV01017841    MAA42569.1    KL367490    KFD70125.1    GEDV01006828    JAP81729.1    JYDJ01000151    KRX42156.1    JYDW01000004    KRZ62956.1    JYDK01000578    KRX59539.1    JYDW01000348    KRZ48953.1    JWZT01003775    KII65574.1    KL367660    KFD60582.1    LSMT01000275    PFX21491.1    KL363234    KFD51889.1    KL363194    KFD56378.1    JARK01001666    EYB83756.1    KL367519    KFD67037.1    GFWV01009597    MAA34326.1   
Pfam
PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00078   RVT_1
PF17917   RT_RNaseH
PF00098   zf-CCHC
PF03732   Retrotrans_gag
PF05485   THAP
PF00077   RVP
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR034128   K02A2.6-like       
IPR000477   RT_dom       
IPR041577   RT_RNaseH_2       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR001995   Peptidase_A2_cat       
IPR041373   RT_RNaseH       
IPR001969   Aspartic_peptidase_AS       
IPR005162   Retrotrans_gag_dom       
IPR006612   THAP_Znf       
IPR018061   Retropepsins       
SUPFAM
SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
Gene 3D
PDB
4OL8     E-value=3.33946e-60,     Score=592

Ontologies

Topology

Length:
1329
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000640000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00003
outside
1  -  1329
 
 

Population Genetic Test Statistics

Pi
377.645852
Theta
187.138686
Tajima's D
3.830332
CLR
0
CSRT
0.997850107494625
Interpretation
Uncertain
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