Gene

KWMTBOMO08475

Pre Gene Modal

BGIBMGA009757

Annotation

Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Exaiptasia_pallida]

Location

Bomo_Chr14(+):10556727-10562451      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.943

CDS

ATGAGTTTCATAGGTTATAAAGCTAAAGTTGAGAATTTATTGTCAAAGATAATTAAAACTCTAAGAAACGATGAAAGTTATTTAAAGAATTCAGGTATTAATCATCAAAAAGCTAATTCATATACACCAGAACAAAATGGACTCTGTGAGAGGATGAACCGAACAATTGTACAAAATAGAATTGTGAAAACTGGATTAAACAACCGCACACCATATGAGGTATGGACAGGCTATCCTGAGGATGTTAAGGGATACCGTATATACAATCCTGCAACACAGAGCATCACAACAAGTCGAGATGTTATATTTATAGAAGAAAATAACTTTGATGAACAGAAGAAAAAATGTATTTTTCTGAGAACATTACCGAAAAGGCACAGAAAGCAACCTGACAGATATGGATATATGTGTACAGAAGAATGTAACAATCCGGTCAAAGATGAATTGACATTAGAAGAGGCACTGGAAGTACCAGAAAAAGAGCACTGGGAACAGGCTATCAAAGAAGAGCTGAAAAGTTTTGAAGACAACAAGGCATGGAATATTGTTGACGTTCCTGTAAGTAGCAACATTGTAAAGTGCAAGTGGGTTCTTAACCCTTAA

Protein

MSFIGYKAKVENLLSKIIKTLRNDESYLKNSGINHQKANSYTPEQNGLCERMNRTIVQNRIVKTGLNNRTPYEVWTGYPEDVKGYRIYNPATQSITTSRDVIFIEENNFDEQKKKCIFLRTLPKRHRKQPDRYGYMCTEECNNPVKDELTLEEALEVPEKEHWEQAIKEELKSFEDNKAWNIVDVPVSSNIVKCKWVLNP

Similarity

Belongs to the terpene synthase family.

Uniprot

A0A1Y1N668   A0A212F7V4   A0A1Y1NAZ7   A0A438JYX4   A0A2N9IBB7   A0A2N9FQZ7   + More
A0A1Y1N932   A0A2N9I9F7   A0A2N9HZR4   A0A2N9FL83   A0A2N9IB18   A0A2N9GD91   R7QQY8   A0A2N9HZS3   A0A1R3GTE9   A0A355BEE2   A0A2N9FGL6   A0A2N9FZX5   A0A2N9GG47   A0A2N9FZ01   A0A438IDK1   A0A396GW39   A0A2N9FEH3   A0A2N9F5X3   A0A2N9G795   A0A2N9EYD8   A0A2N9I0K6   A0A2N9I1P0   A0A2N9EZR3   A5AWN8   Q2RAY7   A0A445I3R1   A0A2N9J5Y1   A0A1Y1N6L8   A0A151SW32   A0A1Y1N664   A0A2N9IGN4   A0A2N9ISP1   A0A1R3G121   A0A2N9G604   A0A2N9H7C1   A0A2N9H173   A0A2N9H4R5   A0A438JJ21   A0A2N9HJF5   A0A2A4JFB7   A0A2N9FVE8   A0A2N9FRN5   A0A1R3HQR7   A0A438IE89   A0A438HJF5   A0A438JT24   A0A2Z6N7E5   A0A2U1L1L3   A5AU78   A0A2N9HKJ8   A0A2N9I807   A0A151RMC4   A5AUN1   A0A1R3J4N4   A0A151SMG1   V5GAG2   A0A438CLS0   A0A151R1S6   A0A438DX60   A0A151T355   A0A2N9ILQ6   A0A438FI75   A0A0J7K724   A0A2N9ER43   A0A2N9IR42   Q8W5F4   A0A438FCQ3   A0A2N9HXG0   Q2QLK1   A0A438HYI4   A0A2N9HIB6   A0A2N9EK88   A0A182HBD9   A0A2I0X5W4   A5BGM4   A0A2Z6N1U2   A5ACQ7   A0A251SDS7   A0A438DQ73   Q8H7M2   A0A2A4JA71   A0A2A4J959   A0A438CUN0   A0A438H4J7   A0A438BPX1   A0A438I2F6   A0A438JRV4  

Pubmed

28004739    22118469    30458008    23503846    30148503    30397259    + More
16188032    22057054    29703587    26483478    26754549    28902843    28538728    16109971   

EMBL

GEZM01011856    JAV93393.1    AGBW02009826    OWR49812.1    GEZM01011855    JAV93396.1    + More
QGNW01000022    RVX14147.1    OIVN01005223    SPD21434.1    OIVN01001060    SPC89349.1    GEZM01011857    JAV93390.1    OIVN01005059    SPD20680.1    OIVN01004420    SPD17230.1    OIVN01000958    SPC87933.1    OIVN01005186    SPD21283.1    OIVN01001762    SPC97349.1    HG002088    CDF39896.1    OIVN01004423    SPD17240.1    AWWV01013476    OMO61385.1    DNYX01000353    HBK84078.1    OIVN01000823    SPC86071.1    OIVN01001636    SPC96106.1    OIVN01001850    SPC98251.1    OIVN01001309    SPC92453.1    QGNW01000119    RVW94747.1    PSQE01000007    RHN45312.1    OIVN01000786    SPC85548.1    OIVN01000569    SPC82281.1    OIVN01001879    SPC98517.1    OIVN01000418    SPC79865.1    OIVN01004456    SPD17553.1    OIVN01004603    SPD18338.1    OIVN01000434    SPC80131.1    AM438353    CAN62929.1    DP000010    ABA91380.1    QZWG01000011    RZB80697.1    OIVN01006381    SPD31869.1    GEZM01011858    GEZM01011854    JAV93389.1    CM003612    KYP58997.1    GEZM01011859    JAV93384.1    OIVN01005657    SPD23465.1    OIVN01006233    SPD28466.1    AWWV01015696    OMO51785.1    OIVN01001514    SPC94830.1    OIVN01002925    SPD07540.1    OIVN01003023    SPD08257.1    OIVN01002812    SPD06621.1    QGNW01000039    RVX08961.1    OIVN01003558    SPD12118.1    NWSH01001791    PCG70130.1    OIVN01001202    SPC91100.1    OIVN01001091    SPC89740.1    AWWV01011373    OMO72757.1    QGNW01000116    RVW95066.1    QGNW01000215    RVW84529.1    QGNW01000028    RVX12113.1    DF973357    GAU27529.1    PKPP01012128    PWA42899.1    AM435764    CAN73802.1    OIVN01003580    SPD12253.1    OIVN01004957    SPD20159.1    KQ483659    KYP43625.1    AM436225    CAN80469.1    AWWV01008599    OMO89770.1    CM003613    KYP55941.1    GALX01001351    JAB67115.1    QGNW01002178    RVW24162.1    KQ484205    KYP36517.1    QGNW01001464    RVW40116.1    CM003610    KYP61490.1    OIVN01006079    SPD25029.1    QGNW01000881    RVW59667.1    LBMM01012321    KMQ86283.1    OIVN01000256    SPC77150.1    OIVN01006160    SPD26619.1    AC091749    AAL31082.1    QGNW01001025    RVW57769.1    OIVN01004262    SPD16359.1    DP000011    ABA99612.1    QGNW01000163    RVW89517.1    OIVN01003498    SPD11675.1    OIVN01000147    SPC75223.1    JXUM01031868    KQ560938    KXJ80258.1    KZ502133    PKU83305.1    AM458858    CAN74536.1    DF973696    GAU37926.1    AM423324    CAN66588.1    CM007903    OTF97009.1    QGNW01001534    RVW37574.1    AC126222    DP000009    AAN64998.1    ABF95728.1    NWSH01002292    PCG68656.1    PCG68657.1    PCG68658.1    QGNW01001976    RVW26891.1    QGNW01000280    RVW79506.1    QGNW01002673    RVW12910.1    QGNW01000151    RVW90885.1    QGNW01000030    RVX11676.1   

Proteomes

UP000007151    UP000288805    UP000012073    UP000188268    UP000265566    UP000289340    + More
UP000075243    UP000218220    UP000245207    UP000036403    UP000069940    UP000249989    UP000233837    UP000215914   

Pfam

PF13976   gag_pre-integrs        + More
PF00665   rve
PF07727   RVT_2
PF00098   zf-CCHC
PF13961   DUF4219
PF01397   Terpene_synth
PF03936   Terpene_synth_C
PF07714   Pkinase_Tyr
PF00182   Glyco_hydro_19
PF05991   NYN_YacP
PF08387   FBD
PF13456   RVT_3
PF03171   2OG-FeII_Oxy
PF00646   F-box

Interpro

IPR001878   Znf_CCHC        + More
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR013103   RVT_2       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR036397   RNaseH_sf       
IPR025724   GAG-pre-integrase_dom       
IPR025314   DUF4219       
IPR008949   Isoprenoid_synthase_dom_sf       
IPR005630   Terpene_synthase_metal-bd       
IPR008930   Terpenoid_cyclase/PrenylTrfase       
IPR034741   Terpene_cyclase-like_1_C       
IPR036965   Terpene_synth_N_sf       
IPR001906   Terpene_synth_N       
IPR011009   Kinase-like_dom_sf       
IPR001245   Ser-Thr/Tyr_kinase_cat_dom       
IPR008271   Ser/Thr_kinase_AS       
IPR000719   Prot_kinase_dom       
IPR023346   Lysozyme-like_dom_sf       
IPR000726   Glyco_hydro_19_cat       
IPR010298   DUF901       
IPR032675   LRR_dom_sf       
IPR036047   F-box-like_dom_sf       
IPR006566   FBD       
IPR002156   RNaseH_domain       
IPR005123   Oxoglu/Fe-dep_dioxygenase       
IPR027443   IPNS-like       
IPR001810   F-box_dom       
IPR017451   F-box-assoc_interact_dom       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF48576   SSF48576       
SSF48239   SSF48239       
SSF56112   SSF56112       
SSF53955   SSF53955       
SSF81383   SSF81383       

Gene 3D

3.30.420.10     1.10.600.10     1.50.10.130     3.80.10.10     2.60.120.330    

CDD

cd00325  chitinase_glyco_hydro_19

ProteinModelPortal

A0A1Y1N668   A0A212F7V4   A0A1Y1NAZ7   A0A438JYX4   A0A2N9IBB7   A0A2N9FQZ7   + More
A0A1Y1N932   A0A2N9I9F7   A0A2N9HZR4   A0A2N9FL83   A0A2N9IB18   A0A2N9GD91   R7QQY8   A0A2N9HZS3   A0A1R3GTE9   A0A355BEE2   A0A2N9FGL6   A0A2N9FZX5   A0A2N9GG47   A0A2N9FZ01   A0A438IDK1   A0A396GW39   A0A2N9FEH3   A0A2N9F5X3   A0A2N9G795   A0A2N9EYD8   A0A2N9I0K6   A0A2N9I1P0   A0A2N9EZR3   A5AWN8   Q2RAY7   A0A445I3R1   A0A2N9J5Y1   A0A1Y1N6L8   A0A151SW32   A0A1Y1N664   A0A2N9IGN4   A0A2N9ISP1   A0A1R3G121   A0A2N9G604   A0A2N9H7C1   A0A2N9H173   A0A2N9H4R5   A0A438JJ21   A0A2N9HJF5   A0A2A4JFB7   A0A2N9FVE8   A0A2N9FRN5   A0A1R3HQR7   A0A438IE89   A0A438HJF5   A0A438JT24   A0A2Z6N7E5   A0A2U1L1L3   A5AU78   A0A2N9HKJ8   A0A2N9I807   A0A151RMC4   A5AUN1   A0A1R3J4N4   A0A151SMG1   V5GAG2   A0A438CLS0   A0A151R1S6   A0A438DX60   A0A151T355   A0A2N9ILQ6   A0A438FI75   A0A0J7K724   A0A2N9ER43   A0A2N9IR42   Q8W5F4   A0A438FCQ3   A0A2N9HXG0   Q2QLK1   A0A438HYI4   A0A2N9HIB6   A0A2N9EK88   A0A182HBD9   A0A2I0X5W4   A5BGM4   A0A2Z6N1U2   A5ACQ7   A0A251SDS7   A0A438DQ73   Q8H7M2   A0A2A4JA71   A0A2A4J959   A0A438CUN0   A0A438H4J7   A0A438BPX1   A0A438I2F6   A0A438JRV4  

KEGG

101737012    K12393 AP-1 complex subunit mu | (RefSeq) AP-1 complex subunit mu-1

GO

GO:0003676   GO:0008270   GO:0015074   GO:0000943   GO:0000287   GO:0010333   GO:0003964   GO:0004672   GO:0005524   GO:0006032   GO:0016998   GO:0004568   GO:0004523   GO:0016491   GO:0016021   GO:0005515   GO:0006182   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR11439  

Length:

200

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.09904

outside

1  -  200

 

 

Pi

217.884105

Theta

145.875319

Tajima's D

1.499313

CLR

0.472827

CSRT

0.791260436978151

Interpretation

Uncertain