Gene

KWMTBOMO08458  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009395

Annotation

PREDICTED:_WD_repeat-containing_protein_18_[Plutella_xylostella]

Location

Bomo_Chr14(-):9581208-9582616      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.446 PlasmaMembrane   Reliability : 1.735

CDS

ATGGCAAATTTACTTGAATTACTGGTTACCGCTGACTGCAACAATCCTTTGTGGACAGCAAGCATCTGGGATTCACATATCGGTACGAATCTCATGACGTACAAAGGTGGAGGTACTGCCGAATCAAAAACGCTTTCTTTCATCGGTAACGATTATATAGCAGCAGTAGAAAAGACTAAACCAATATTACACATATGGCCCTTGAATTCACATCAGCCGGTCCAAGGAATGCGGTTTATTTTACCCGGAAAAGCGAGTGCCTTGTCTATAACCCGAGACGGCTCCTACATATGTGCTGGAATCGAAGAGAAAATCTACTTGTGGCAGACTGCGTCGGGAAATCTGTTGACTATAATCAGCCGTCACTATCAGAAAGTTGTATCATTAAAATTCACACCAGATGGAAAGTATTTCATATCAGCGGCTGAAGATGGAATGGTAATGGTTTGGTCGCTTGCATCTGTGGCAGCACATCCAGAAATCGATCTTGTGACGCAGTCGTCTGCTGGCCAACATGACCCAGTTCATATCTTCTCTGATCATTCTCTACCTGTAACTGATTTGTTTATAAGTAAATTTGGTATGCATGGACGTCTGTGTACTGTGTCTAGTGATAGGACTTGTAAAATATATGATCTATCTACTGGAGAGATGTTATTGAATCTAGTCTTTGATGTTCCTCTGTCGGCTGTCACTATGGATGTTTTAGAATTGAATGTGTTTGTTGGAAGCAATGAAGGTAAAATATATCAGTTCAGCCTTGCCCATCCACCTAGGAGCAGAGATTTATTGATCAATTCTGAAAACGGATCTCCGGTCTTCACGTTACATACTAAAGCTATAACATGTCTCTCTGTCTCATTAGATGGTGAAACTCTCATGTCAGGTTCCAATGATGAGCATGTTATACTATGGCACATACCTAGTCGACAGCCAATTAGAACTATAAGACACAAAGGGCCAATTACAAATGGATTTTTTACTGTAAACCTTCCAGCTATTTTTCAATCTGAATTTTGTCCTGACATTGTTCTACATAGTTTGGAGAGGACACTTGAAAAAGATTCTGATGAAGCTACTGAAATAGAAGTCTTGATAAATAAGAAAATTAGTTTTTGGCCAGAACAAAATTCTTATGAAATCAAAGAAATAATACAACAAACTGAGACTTCATTTATGGGACAAGAAAAGAAATGGAAAAATGAAATAGAAACTTTAAAGGCAGTAAATGCAAAACTTTATGCATTTTCTATAAATAAAGCAATAGATGCAGTTCCATTAGTGAATGAATCAATTATAAAAAAGGCTAAAAAGAAGAAAAACAATAAGAAAAATAAGTAA

Protein

MANLLELLVTADCNNPLWTASIWDSHIGTNLMTYKGGGTAESKTLSFIGNDYIAAVEKTKPILHIWPLNSHQPVQGMRFILPGKASALSITRDGSYICAGIEEKIYLWQTASGNLLTIISRHYQKVVSLKFTPDGKYFISAAEDGMVMVWSLASVAAHPEIDLVTQSSAGQHDPVHIFSDHSLPVTDLFISKFGMHGRLCTVSSDRTCKIYDLSTGEMLLNLVFDVPLSAVTMDVLELNVFVGSNEGKIYQFSLAHPPRSRDLLINSENGSPVFTLHTKAITCLSVSLDGETLMSGSNDEHVILWHIPSRQPIRTIRHKGPITNGFFTVNLPAIFQSEFCPDIVLHSLERTLEKDSDEATEIEVLINKKISFWPEQNSYEIKEIIQQTETSFMGQEKKWKNEIETLKAVNAKLYAFSINKAIDAVPLVNESIIKKAKKKKNNKKNK

Uniprot

H9JIP4   A0A2A4JPA1   A0A2H1W7A6   A0A0L7LB43   S4PEZ2   A0A194Q7B3   + More
A0A0N1PHC8   A0A212EWU2   A0A067RMJ8   A0A2J7PNM0   A0A2J7RSA7   A0A182G866   B0WSI0   Q16HG2   A0A1S4G142   A0A1Q3F1G0   A0A1J1HNN8   E0V9A7   A0A0L0CJ24   A0A087ZUL9   A0A2A3ET14   A0A154P879   A0A0A1X0R4   A0A1A9VEK2   A0A1I8M9B2   W8C4L3   A0A232FAG9   A0A0M9A2A2   A0A3Q0J3P3   K7ISF3   A0A034VFH4   D3TS49   A0A1B0FEZ0   F4X3R1   A0A1I8P2U0   A0A0K8WE85   A0A1B0APM6   A0A158P035   A0A195E037   A0A0L7R356   A0A1S3IZC0   C3YQL5   A0A0J7L526   A0A2H8TZS8   A0A195F353   E9IT01   A0A2M4AMP6   A0A1L8DC06   A0A2M4CSA1   A0A1B0CSY7   A0A1L8DCA2   A0A2M4CSQ3   A0A1A8FNN5   A0A1B6C927   A0A0C9QZS8   A0A2M4BNX7   A0A2M4BNU6   A0A1A8PRY2   A0A1A8QK52   A0A1A8IJV3   E2AYH7   A0A195CQP2   A0A3P9D1B0   A0A3P8QJ79   A0A2M4BNT1   A0A151XJW0   J9K534   A0A2U9C1B0   I3JA47   A0A1A8B3S2   A0A1A8CP30   A0A3B4G3I6   A0A3Q2V6E5   A0A026WP58   A0A2S2PES9   B3MXH7   A0A3B5ADH4   B3P9N3   A0A310SG52   A0A2U9C2W2   B4Q1L2   A0A3Q1CUJ0   A0A2I4DD27   A0A3Q3MC66   A0A0N7ZPI6   A0A3P8S136   A0A164Q6L8   B4I9J9   A0A3Q3RB18   W5UJ28   Q9W550   B4N279   A0A1A7YTQ1   F1LR39   A0A182YC96   Q8SX33   A0A1W4ZKL7   A0A3B4G3K8  

Pubmed

19121390    26227816    23622113    26354079    22118469    24845553    + More
26483478    17510324    20566863    26108605    25830018    25315136    24495485    28648823    20075255    25348373    20353571    21719571    21347285    18563158    21282665    20798317    25186727    24508170    30249741    17994087    17550304    23127152    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15057822    15632090    25244985   

EMBL

BABH01032921    NWSH01000906    PCG73586.1    ODYU01006786    SOQ48961.1    JTDY01001864    + More
KOB72693.1    GAIX01004277    JAA88283.1    KQ459337    KPJ01432.1    KQ459986    KPJ18818.1    AGBW02011894    OWR45959.1    KK852536    KDR21830.1    NEVH01023953    PNF17916.1    NEVH01000263    PNF43726.1    JXUM01047489    KQ561521    KXJ78295.1    DS232072    EDS33910.1    CH478175    EAT33685.1    GFDL01013717    JAV21328.1    CVRI01000014    CRK89661.1    DS234991    EEB09963.1    JRES01000333    KNC32227.1    KZ288185    PBC34868.1    KQ434839    KZC08053.1    GBXI01009962    JAD04330.1    GAMC01009526    JAB97029.1    NNAY01000561    OXU27655.1    KQ435758    KOX75825.1    GAKP01018407    JAC40545.1    EZ424251    ADD20527.1    CCAG010003465    GL888624    EGI58858.1    GDHF01003149    JAI49165.1    JXJN01001491    ADTU01005289    KQ979955    KYN18483.1    KQ414663    KOC65307.1    GG666543    EEN57371.1    LBMM01000566    KMQ98052.1    GFXV01007456    MBW19261.1    KQ981856    KYN34514.1    GL765434    EFZ16264.1    GGFK01008733    MBW42054.1    GFDF01010086    JAV03998.1    GGFL01004032    MBW68210.1    AJWK01026782    GFDF01010087    JAV03997.1    GGFL01004033    MBW68211.1    HAEB01013222    HAEC01003627    SBQ59749.1    GEDC01027364    GEDC01022028    GEDC01002003    JAS09934.1    JAS15270.1    JAS35295.1    GBYB01001220    JAG70987.1    GGFJ01005532    MBW54673.1    GGFJ01005533    MBW54674.1    HAEF01015180    HAEG01009153    SBR83749.1    HAEH01012007    HAEI01016153    SBR93703.1    HAED01011170    HAEE01015330    SBQ97468.1    GL443910    EFN61512.1    KQ977394    KYN03063.1    GGFJ01005531    MBW54672.1    KQ982074    KYQ60490.1    ABLF02036171    CP026254    AWP10405.1    AERX01026330    AERX01026331    AERX01026332    AERX01026333    HADY01022861    HAEJ01001599    SBP61346.1    HADZ01017591    SBP81532.1    KK107139    QOIP01000003    EZA57842.1    RLU24786.1    GGMR01015331    MBY27950.1    CH902630    EDV38442.1    CH954183    EDV45529.1    KQ768090    OAD53219.1    AWP10403.1    CM000162    EDX01453.1    GDIP01225249    JAI98152.1    LRGB01002451    KZS07477.1    CH480825    EDW43880.1    JT416284    AHH41996.1    AE014298    BT133493    AAF45681.1    AFI71923.1    CH963925    EDW78468.1    HADW01008945    HADX01011339    SBP33571.1    AABR07055844    CH474029    EDL89362.1    AY094880    AAM11233.1   

Proteomes

UP000005204    UP000218220    UP000037510    UP000053268    UP000053240    UP000007151    + More
UP000027135    UP000235965    UP000069940    UP000249989    UP000002320    UP000008820    UP000183832    UP000009046    UP000037069    UP000005203    UP000242457    UP000076502    UP000078200    UP000095301    UP000215335    UP000053105    UP000079169    UP000002358    UP000092444    UP000007755    UP000095300    UP000092460    UP000005205    UP000078492    UP000053825    UP000085678    UP000001554    UP000036403    UP000078541    UP000092461    UP000000311    UP000078542    UP000265160    UP000265100    UP000075809    UP000007819    UP000246464    UP000005207    UP000261460    UP000264840    UP000053097    UP000279307    UP000007801    UP000261400    UP000008711    UP000002282    UP000257160    UP000192220    UP000261640    UP000265080    UP000076858    UP000001292    UP000261600    UP000000803    UP000007798    UP000002494    UP000076408    UP000192224   

PRIDE

H9JIP4    Q9W550    F1LR39    Q8SX33   

Pfam

PF00400   WD40        + More
PF14077   WD40_alt
PF12894   ANAPC4_WD40

Interpro

IPR011047   Quinoprotein_ADH-like_supfam        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR035007   ANKLE2       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR002110   Ankyrin_rpt       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR026987   Wdr18_C_dom       
IPR024977   Apc4_WD40_dom       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF48403   SSF48403       

Gene 3D

2.130.10.10     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

H9JIP4   A0A2A4JPA1   A0A2H1W7A6   A0A0L7LB43   S4PEZ2   A0A194Q7B3   + More
A0A0N1PHC8   A0A212EWU2   A0A067RMJ8   A0A2J7PNM0   A0A2J7RSA7   A0A182G866   B0WSI0   Q16HG2   A0A1S4G142   A0A1Q3F1G0   A0A1J1HNN8   E0V9A7   A0A0L0CJ24   A0A087ZUL9   A0A2A3ET14   A0A154P879   A0A0A1X0R4   A0A1A9VEK2   A0A1I8M9B2   W8C4L3   A0A232FAG9   A0A0M9A2A2   A0A3Q0J3P3   K7ISF3   A0A034VFH4   D3TS49   A0A1B0FEZ0   F4X3R1   A0A1I8P2U0   A0A0K8WE85   A0A1B0APM6   A0A158P035   A0A195E037   A0A0L7R356   A0A1S3IZC0   C3YQL5   A0A0J7L526   A0A2H8TZS8   A0A195F353   E9IT01   A0A2M4AMP6   A0A1L8DC06   A0A2M4CSA1   A0A1B0CSY7   A0A1L8DCA2   A0A2M4CSQ3   A0A1A8FNN5   A0A1B6C927   A0A0C9QZS8   A0A2M4BNX7   A0A2M4BNU6   A0A1A8PRY2   A0A1A8QK52   A0A1A8IJV3   E2AYH7   A0A195CQP2   A0A3P9D1B0   A0A3P8QJ79   A0A2M4BNT1   A0A151XJW0   J9K534   A0A2U9C1B0   I3JA47   A0A1A8B3S2   A0A1A8CP30   A0A3B4G3I6   A0A3Q2V6E5   A0A026WP58   A0A2S2PES9   B3MXH7   A0A3B5ADH4   B3P9N3   A0A310SG52   A0A2U9C2W2   B4Q1L2   A0A3Q1CUJ0   A0A2I4DD27   A0A3Q3MC66   A0A0N7ZPI6   A0A3P8S136   A0A164Q6L8   B4I9J9   A0A3Q3RB18   W5UJ28   Q9W550   B4N279   A0A1A7YTQ1   F1LR39   A0A182YC96   Q8SX33   A0A1W4ZKL7   A0A3B4G3K8  

PDB

5AFU     E-value=2.3694e-10,     Score=158

KEGG

101742973    K14829 pre-rRNA-processing protein IPI3 | (RefSeq) WD repeat-containing protein 18

GO

GO:0051721   GO:0035307   GO:0007084   GO:0016787   GO:0097344   GO:0005656   GO:0030174   GO:0006364   GO:0016021   GO:0007368   GO:0070121   GO:0005515   GO:0005524   GO:0006468   GO:0003676   GO:0006182   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12349:SF4  

Length:

446

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.05491

Exp number, first 60 AAs:

0.00106

Total prob of N-in:

0.00380

outside

1  -  446

 

 

Pi

259.912861

Theta

231.53385

Tajima's D

0.479335

CLR

0.100176

CSRT

0.504074796260187

Interpretation

Uncertain