Silkworm Genome Informatics Database

Gene

KWMTBOMO08457 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009396

Annotation

PREDICTED:_ankyrin_repeat_and_LEM_domain-containing_protein_2?_partial_[Bombyx_mori]

Location

Bomo_Chr14(-):9559929-9578006 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.415

CDS

ATGTCGAAGGCGGTTGTCATACCTGGCAGCAAAGATATCGGAGGAATGAGAGAGGAGCTGTCGATATCTCCCAGCGAAAAGAAAGATGGTGCCATAGGGCTCTTGCGCCGCTTTTTACGTTTCGAATCCCTAAAGCGATCGAGTCCAGTGAGTCCCACCAGCCTTGAACCTTCCGTCACGTACTATGGCGTCTATATACCGTGCGAGATCAAAAAGGGACCAGATGAAGAAGCCCTGCATGTATACGAGAACAAGGCTGACGCTCTAGAACTAGTGAAGAGATATAAACTAGCAAGATTCAAAGCATTCCGGAATCGACAAGATGCTATTTCATTTGCACTACGGGGTGCTGAGCCTGTTGACACCACAGACGGGAATGACAATTCTCTTATGGGAGAGAAGCCGTATCCATTCAAAGCGCCGTCCCCCCAGGACATGGTGTCGCTACGGAAGGCCATCGAAGCCGGACTGACCTGTACCGTGAGGGACAGGGTGTGGGACAACCCAAGGTTCTTAGTCAGCAGTGGGAACACACCAGCCATAATGCAGGAAGGATCTCGTTACAACGCATTGCACGTAGCGGCCAAGTCTATGAATGCTGAGATCTGCAATCTCATACTGACGACCGTCGGGGACCCCGCCTTCGTGCAGAAGCTGTACGGAGGCGACGCGGACCCGGAATCCTGCAAGGAATTCGCGGGCATCCTGGTGGATCGTTACCTGAACACCCCGGACAAGGCAATGAACGAGACTCCTCTTCACTTCGCCGCCAAGTTCGGTGCCGAGGAGGTGGTGGACGTGCTCACTTCCTTCCCGCAGTGCGACCTGTCCGCCGTCAACAAGTACGGAGAGCAAGCCAAAGATATAATATGCAAGCGAGCATCGGGCAGGGTGGAGGAGCGCGCGGGGCGCATGGCGACGTTGCTGCAGCAGCGCTACTACGTGCCCGTGCTGCACTGCGAGGACGGCAGCGCCGCGCCCGAGGTCGGCCGCCCCTTCACGCCCGCCGCGCCGCCGGACATAAACCCGGACCCTCTGAGTCCGCGGTACGAGATCCGCGCGTACGCCGGCCCCATGCGGGCGGAGCGCGCCGCCAGCCTGCGCGTGCGCTGGAAGACTCCGCCGCGCGCCGCCTTCCGCCTGCACGACCTCGCCAAGGGACTCGAGACCGTGGGCAGAAACCTAGCTAACGAAATGAATGTGGATTGGAAGGAATACTGGCCATTTTTGGAAACCTTTACCGATCTGAGGACTACAGAGGGACTGACACTCTTAGAGAACTATTTGAAGGCCAAGTACGAGAGCGCGTGGTCGCTCGCGTACAGTGACAGTTGCGTAGAGTCGCGGCTGGAGGACTCCTCAGTGTCCAGGATCGCGCTCAGCCTGTCCCACAACAGTCCCGTGGTCGAAACCAACCTCAGCCCCATGTCGGAACTGTGCGACGCGATGAGAACCTGCAAGATATCAAACGACCGACCCTCTCATTGGAACAGAACCGATCCGGTCAAGCAAAGGTTGTGTCGCCAGCCCCACAAGCTCGCCGCCAACGGGGACTCATCGCCCATCGCCAACCACACCGTCAGCCGGCTCCTCTGCATCGAGAGGACGTGCCAAGTGTTCGCCAAGAGGATAGCGGACGCGCTGGCGCTCTCCCTCTCCCTCCGCTCTGAGGCGAAGCACCTGCAGCACACGATCTCCACGTACATGGACGACGAGCGTTTTCAGAAGATCGACTTCGCTCTGATCCACTCGCGCCTGGCCCAGCTCGTCGTCTCCAAGCTGAAGCAGCGGACGGATGACGTCAGCACGTTACTAGAATATCTAGTGAAGCTGCGGTGTCCCAACGAGGACATCTTCAGCTCGGACGAGGAGAGGCGGCCCGGCCACCGCGCTCGCCACAAGCTGTCCCAGGTCATCGACGAGCACGTGCGCTGTCTGTCCAGCTTCGTGTGCGAGGAGCTGAACGAAGCCAAGGGCTGCAAGGGCCCCGCGGTGTCGGAGAGCGAGTGTTTGGTGCTGTGGGAGCACGCCTGCAAGTGCCTCTGCGACTGGAAGGTGGAGCTGGACCGAAGCAGCAAGAGGAACTCGTCCTTCCGGAAGAATCGCTCGACTCTGTCCACCAGTCCGAAGAGTGATAGCTTCATAAGAAGATTGAATTTTGACCATGACATCGGTGACGGTAAACTCCAGAACGTTGAATTTGAGAAGCCGGTGCTGCTGAACTCTCCAGCCGGCGACGGCGGCCCCACCCTCGTCACCGTCCAGATGGACAAGTGTCAAGTTGTCGAGGCTGAGTTATCAGAAGATGAATCGATAGCGTCGTGCAACTCTGAAGGGGAGGAGGCGTACGTCACCGCCTCCGAGCACTCCGAGGCAGAGGAGGAAATGTTCGAAGCACTAGACAGGGCTGCGGCCGAACCATTCATATACGGCGAGGAGCCCAGCAAGGCGGACCGGCTGGTGTACGACGCGCTGGCGGACTGCCGCGTGTCTCCCGACGAGTACCCCTGCGTGTACCGCTGGCGCCATGCCGTCGGACTCTACGCGCCGCGCGACAGAAACAGTTGGCGAGAGCACGAGCAGCGCGCCGAGAGCCGCACGTTCGCCGCCCCCGCGCACTGCTCCACGCCGCGGGGCGGGCCGGGGGGCGGGGCGTGGGGCACGCAGGGAGGCGGGGCGTGGGGCACGCATGGAGGCGGGGCGTGGGGCACGCATGGAGGCGGGGCATGGAGTACGCAGGGGGGCGGGGCGGGGGGCACGCCGGGGGCCTCCAGCCCCGACCGCACCATCTCGCTGCAGGTGTCGCGGTGGCTGCGCGTGACGGGCCCGAACTCGCCGCGCTCGGCCCCCGCGGTGCGGTCCGCGGGCCACAACGTCAGCTTCGGCTTCTGA

Protein

MSKAVVIPGSKDIGGMREELSISPSEKKDGAIGLLRRFLRFESLKRSSPVSPTSLEPSVTYYGVYIPCEIKKGPDEEALHVYENKADALELVKRYKLARFKAFRNRQDAISFALRGAEPVDTTDGNDNSLMGEKPYPFKAPSPQDMVSLRKAIEAGLTCTVRDRVWDNPRFLVSSGNTPAIMQEGSRYNALHVAAKSMNAEICNLILTTVGDPAFVQKLYGGDADPESCKEFAGILVDRYLNTPDKAMNETPLHFAAKFGAEEVVDVLTSFPQCDLSAVNKYGEQAKDIICKRASGRVEERAGRMATLLQQRYYVPVLHCEDGSAAPEVGRPFTPAAPPDINPDPLSPRYEIRAYAGPMRAERAASLRVRWKTPPRAAFRLHDLAKGLETVGRNLANEMNVDWKEYWPFLETFTDLRTTEGLTLLENYLKAKYESAWSLAYSDSCVESRLEDSSVSRIALSLSHNSPVVETNLSPMSELCDAMRTCKISNDRPSHWNRTDPVKQRLCRQPHKLAANGDSSPIANHTVSRLLCIERTCQVFAKRIADALALSLSLRSEAKHLQHTISTYMDDERFQKIDFALIHSRLAQLVVSKLKQRTDDVSTLLEYLVKLRCPNEDIFSSDEERRPGHRARHKLSQVIDEHVRCLSSFVCEELNEAKGCKGPAVSESECLVLWEHACKCLCDWKVELDRSSKRNSSFRKNRSTLSTSPKSDSFIRRLNFDHDIGDGKLQNVEFEKPVLLNSPAGDGGPTLVTVQMDKCQVVEAELSEDESIASCNSEGEEAYVTASEHSEAEEEMFEALDRAAAEPFIYGEEPSKADRLVYDALADCRVSPDEYPCVYRWRHAVGLYAPRDRNSWREHEQRAESRTFAAPAHCSTPRGGPGGGAWGTQGGGAWGTHGGGAWGTHGGGAWSTQGGGAGGTPGASSPDRTISLQVSRWLRVTGPNSPRSAPAVRSAGHNVSFGF

Uniprot

H9JIP5 A0A2A4JNH6 A0A437BHF6 A0A194Q5Q3 A0A2H1W7A6 A0A212EWU2 + More
A0A0N0PEE5 A0A2J7PXD2 A0A1B6ER65 A0A1B6F0K0 A0A1B6BZT8 A0A1B6DTR8 D2A2F8 A0A1W4X4X3 A0A023EY24 A0A3R7M8C3 T1J3Y4

Pubmed

19121390 26354079 22118469 18362917 19820115 25474469 + More

EMBL

BABH01032919 BABH01032920 NWSH01000906 PCG73587.1 RSAL01000059 RVE49685.1 + More
KQ459460 KPJ00684.1 ODYU01006786 SOQ48961.1 AGBW02011894 OWR45959.1 KQ459986 KPJ18820.1 NEVH01020859 PNF21001.1 GECZ01029340 JAS40429.1 GECZ01025980 JAS43789.1 GEDC01030769 JAS06529.1 GEDC01008235 JAS29063.1 KQ971338 EFA02194.1 GBBI01004724 JAC13988.1 QCYY01001746 ROT75688.1 JH431832

Proteomes

UP000005204 UP000218220 UP000283053 UP000053268 UP000007151 UP000053240 + More
UP000235965 UP000007266 UP000192223 UP000283509

PRIDE

H9JIP5

Pfam

PF00400   WD40        + More
PF01693   Cauli_VI
PF03020   LEM
PF00611   FCH
PF07653   SH3_2
PF13639   zf-RING_2
PF14604   SH3_9

Interpro

IPR002110   Ankyrin_rpt        + More
IPR035007   ANKLE2
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR017986   WD40_repeat_dom
IPR001680   WD40_repeat
IPR036322   WD40_repeat_dom_sf
IPR011320   RNase_H1_N
IPR011015   LEM/LEM-like_dom_sf
IPR003887   LEM_dom
IPR031160   F_BAR
IPR001452   SH3_domain
IPR027267   AH/BAR_dom_sf
IPR001060   FCH_dom
IPR035460   FCHSD_SH3_1
IPR036028   SH3-like_dom_sf
IPR013083   Znf_RING/FYVE/PHD
IPR001841   Znf_RING

SUPFAM

SSF48403   SSF48403        + More
SSF50978   SSF50978
SSF63451   SSF63451
SSF103657   SSF103657
SSF50044   SSF50044

Gene 3D

1.25.40.20 2.130.10.10 1.10.720.40 1.20.1270.60 3.30.40.10

CDD

cd00204 ANK
cd11761 SH3_FCHSD_1

ProteinModelPortal

H9JIP5 A0A2A4JNH6 A0A437BHF6 A0A194Q5Q3 A0A2H1W7A6 A0A212EWU2 + More
A0A0N0PEE5 A0A2J7PXD2 A0A1B6ER65 A0A1B6F0K0 A0A1B6BZT8 A0A1B6DTR8 D2A2F8 A0A1W4X4X3 A0A023EY24 A0A3R7M8C3 T1J3Y4

PDB

5AQB E-value=0.000603015, Score=106

KEGG

101744789 K21412 ankyrin repeat and LEM domain-containing protein 2 | (RefSeq) ankyrin repeat and LEM domain-c

GO

GO:0051721 GO:0007084 GO:0035307 GO:0005783 GO:0042326 GO:0016021 GO:0005515 GO:0005524 GO:0006468 GO:0003676 GO:0006182 GO:0051603 GO:0030145 GO:0006412 GO:0016876 GO:0043039

PANTHER

PTHR12349:SF4

Length:

963

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000880000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00004

outside

1 - 963

Pi

435.591919

Theta

195.603242

Tajima's D

3.731795

CLR

0.327911

CSRT

0.997350132493375

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics