Gene

KWMTBOMO08454  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009397

Annotation

ELL_complex_EAP30_subunit_[Bombyx_mori]

Location

Bomo_Chr14(-):9531623-9534666      View in EpiBrowser

Full name

Vacuolar-sorting protein SNF8      

Location in the cell

Cytoplasmic   Reliability : 2.529

CDS

ATGCGACGCCGCGCAGGTGTAGGTGCAATCCAAAAACACAGATTGGAACAAGAGAAATATAAAGAAAAGGGCACAGAAATACAAGAAAACCAATTCCAGCAGATGTCGAAACAACTGGAAGTGTTTAGGGAAAATTTGGAAGATTTTGCATCAAAACACAAGAGTGAAATAAAGAAGAATGCTCAGTTCAGAAGGCAATTTCAGGAAATGTGTGCTGCCATCGGTGTGGATCCACTGGCTTCGGGGAAAGGATTCTGGTCTGTTCTTGGTATTGGTGATTTTTACTATGAGCTAGGAGTGCAAATAGTAGAGGTGTGCTTGGCTACCAACTACAAGAATGGAGGTCTCATAACTTTAGAGGAATTACGTTCCAGACTTATAGCTTCTCGTGGCCGAGCAAAGAAGCATCAAGACATCACAAATGAAGATCTGCTAGCGGCAGTGAAAAAACTAAGGATATTTGGAAATGGGTTTACTGTAGTTCCGATCAGTAAAGGCAAATGGCTGGTTCAATCGGTGCCTGGTGAATTAAACATGGATCAAACACTAGTTCTTCAGAAGGCCAGTGGACTTGGAACAGCGTGGGTCTCTGTTAGTGTTCTCACTAGCGACCTCGGTTGGACTGAAATCAGAGCCGAGAATGCTTTGAACCATATGGTGAGAGAAGGTCTCGCCTGGGTGGACTCGCAGGAACCGAAAGAGACGTTGTACTGGTTCCCTAGCATGTTTGCAGAATGCGTATCAGCATGA

Protein

MRRRAGVGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQFQEMCAAIGVDPLASGKGFWSVLGIGDFYYELGVQIVEVCLATNYKNGGLITLEELRSRLIASRGRAKKHQDITNEDLLAAVKKLRIFGNGFTVVPISKGKWLVQSVPGELNMDQTLVLQKASGLGTAWVSVSVLTSDLGWTEIRAENALNHMVREGLAWVDSQEPKETLYWFPSMFAECVSA

Description

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs.

Subunit

Component of the endosomal sorting complex required for transport II (ESCRT-II).

Similarity

Belongs to the SNF8 family.

Uniprot

Q1HQ27   A0A1E1VYG0   A0A2A4IWD8   A0A2H1VNK1   A0A194Q564   A0A212EWY2   + More
A0A437BH73   E2BGT6   A0A1B6M4S6   A0A2J7PG30   A0A0L7R207   A0A1B6K7E6   A0A195DC50   A0A154P6A6   A0A0N0U511   A0A195F3S6   A0A158P1S5   F4WME7   A0A195D3I1   E9IKZ1   A0A067RBH8   A0A2A3ERL4   A0A088AE71   A0A151WJT8   A0A2P8Y073   K7IX90   A0A0J7KB90   A0A026W1F8   E2AZJ8   A0A232FBI0   A0A310SFV1   A0A1S3DIH9   A0A2S2QEG3   A0A1B6C4K5   C4WXX4   A0A1B6FTH4   D1ZZC9   A0A1W4X5A2   A0A1Y1LWD8   U5EXW7   A0A084VXC4   E0VP80   A0A182LBR6   Q7QE89   A0A182H2W8   B0WTT5   A0A182JYM4   A0A023EMC5   A0A182XEK4   A0A182TT71   A0A182I9J9   J3JXJ9   A0A1Q3FFN6   A0A182P6U1   N6U4Z4   A0A182QQU4   A0A1S4FT08   A0A182M8V0   A0A182W467   Q16Q65   A0A182RH87   A0A0L0BXV3   A0A336KH21   A0A182N2M4   A0A2R7VZA5   A0A034W287   A0A182Y561   A0A336KYS3   A0A0C9QQP3   A0A0A1XL22   A0A1A9WPH0   A0A1W4W3C6   A0A2M4BXK9   A0A1A9YBH4   A0A2M4BXR4   T1DPN9   A0A2M4BXL0   A0A1A9Z9Z0   A0A1A9UFR8   B4PKW3   Q9VD72   D3TRG6   B4G626   A0A1B0G569   B4NHP3   B4QZA1   B3LVI2   Q29AQ9   B4HM53   A0A182FJV3   A0A1I8P7G3   A0A2M4AJN9   A0A3B0JKU4   B4LWP8   A0A069DQ58   A0A023F8R0   A0A0V0GBT1   B3P8R7   A0A2M3Z9K1   A0A2M4CZG0  

Pubmed

19121390    26354079    22118469    20798317    21347285    21719571    + More
21282665    24845553    29403074    20075255    24508170    30249741    28648823    18362917    19820115    28004739    24438588    20566863    20966253    12364791    14747013    17210077    26483478    24945155    22516182    23537049    17510324    26108605    25348373    25244985    25830018    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20353571    15632085    26334808    25474469   

EMBL

BABH01032918    DQ443225    JX569221    ABF51314.1    AFW03816.1    GDQN01011330    + More
JAT79724.1    NWSH01005356    PCG64277.1    ODYU01003513    SOQ42400.1    KQ459460    KPJ00682.1    AGBW02011894    OWR45957.1    RSAL01000059    RVE49683.1    GL448228    EFN85068.1    GEBQ01009052    JAT30925.1    NEVH01025635    PNF15283.1    KQ414666    KOC64869.1    GECU01000372    JAT07335.1    KQ980989    KYN10490.1    KQ434827    KZC07476.1    KQ435794    KOX73678.1    KQ981855    KYN34832.1    ADTU01001111    GL888217    EGI64791.1    KQ976948    KYN06929.1    GL764026    EFZ18778.1    KK852614    KDR20205.1    KZ288192    PBC34405.1    KQ983036    KYQ48091.1    PYGN01001092    PSN37662.1    AAZX01000577    LBMM01010320    KMQ87544.1    KK107488    QOIP01000012    EZA49897.1    RLU16298.1    GL444248    EFN61131.1    NNAY01000465    OXU28181.1    KQ761662    OAD57191.1    GGMS01006878    MBY76081.1    GEDC01028875    JAS08423.1    ABLF02037889    AK342903    BAH72744.1    GECZ01016257    JAS53512.1    KQ971338    EFA01867.1    GEZM01045245    JAV77843.1    GANO01002325    JAB57546.1    ATLV01017955    KE525202    KFB42618.1    DS235357    EEB15186.1    AAAB01008847    EAA06892.1    JXUM01107112    KQ565113    KXJ71323.1    DS232092    EDS34626.1    GAPW01003618    JAC09980.1    APCN01000987    BT127968    KB632241    AEE62930.1    ERL90542.1    GFDL01008677    JAV26368.1    APGK01039493    KB740970    ENN76665.1    AXCN02001078    AXCM01001219    CH477759    EAT36541.1    JRES01001168    KNC24850.1    UFQS01000415    UFQT01000415    SSX03739.1    SSX24104.1    KK854188    PTY12817.1    GAKP01010153    GAKP01010151    JAC48799.1    UFQS01001255    UFQT01001255    SSX09954.1    SSX29677.1    GBYB01002982    JAG72749.1    GBXI01002238    JAD12054.1    GGFJ01008674    MBW57815.1    GGFJ01008672    MBW57813.1    GAMD01003184    JAA98406.1    GGFJ01008675    MBW57816.1    CM000160    EDW97912.1    AE014297    BT032686    AAF55927.1    ACD81700.1    EZ424018    ADD20294.1    CH479179    EDW23785.1    CCAG010016584    CH964272    EDW84653.1    CM000364    EDX13837.1    CH902617    EDV42552.1    CM000070    EAL27290.2    CH480815    EDW43101.1    GGFK01007678    MBW40999.1    OUUW01000007    SPP82947.1    CH940650    EDW67713.1    GBGD01002686    JAC86203.1    GBBI01000937    JAC17775.1    GECL01000473    JAP05651.1    CH954182    EDV54231.1    GGFM01004452    MBW25203.1    GGFL01006060    MBW70238.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000008237    + More
UP000235965    UP000053825    UP000078492    UP000076502    UP000053105    UP000078541    UP000005205    UP000007755    UP000078542    UP000027135    UP000242457    UP000005203    UP000075809    UP000245037    UP000002358    UP000036403    UP000053097    UP000279307    UP000000311    UP000215335    UP000079169    UP000007819    UP000007266    UP000192223    UP000030765    UP000009046    UP000075882    UP000007062    UP000069940    UP000249989    UP000002320    UP000075881    UP000076407    UP000075902    UP000075840    UP000030742    UP000075885    UP000019118    UP000075886    UP000075883    UP000075920    UP000008820    UP000075900    UP000037069    UP000075884    UP000076408    UP000091820    UP000192221    UP000092443    UP000092445    UP000078200    UP000002282    UP000000803    UP000008744    UP000092444    UP000007798    UP000000304    UP000007801    UP000001819    UP000001292    UP000069272    UP000095300    UP000268350    UP000008792    UP000008711   

PRIDE

Q1HQ27    Q9VD72   

Pfam

PF04157   EAP30

Interpro

IPR040608   Snf8/Vps36        + More
IPR036388   WH-like_DNA-bd_sf       
IPR016689   ESCRT-2_cplx_Snf8       
IPR036390   WH_DNA-bd_sf       

SUPFAM

SSF46785   SSF46785       

Gene 3D

1.10.10.10    

ProteinModelPortal

Q1HQ27   A0A1E1VYG0   A0A2A4IWD8   A0A2H1VNK1   A0A194Q564   A0A212EWY2   + More
A0A437BH73   E2BGT6   A0A1B6M4S6   A0A2J7PG30   A0A0L7R207   A0A1B6K7E6   A0A195DC50   A0A154P6A6   A0A0N0U511   A0A195F3S6   A0A158P1S5   F4WME7   A0A195D3I1   E9IKZ1   A0A067RBH8   A0A2A3ERL4   A0A088AE71   A0A151WJT8   A0A2P8Y073   K7IX90   A0A0J7KB90   A0A026W1F8   E2AZJ8   A0A232FBI0   A0A310SFV1   A0A1S3DIH9   A0A2S2QEG3   A0A1B6C4K5   C4WXX4   A0A1B6FTH4   D1ZZC9   A0A1W4X5A2   A0A1Y1LWD8   U5EXW7   A0A084VXC4   E0VP80   A0A182LBR6   Q7QE89   A0A182H2W8   B0WTT5   A0A182JYM4   A0A023EMC5   A0A182XEK4   A0A182TT71   A0A182I9J9   J3JXJ9   A0A1Q3FFN6   A0A182P6U1   N6U4Z4   A0A182QQU4   A0A1S4FT08   A0A182M8V0   A0A182W467   Q16Q65   A0A182RH87   A0A0L0BXV3   A0A336KH21   A0A182N2M4   A0A2R7VZA5   A0A034W287   A0A182Y561   A0A336KYS3   A0A0C9QQP3   A0A0A1XL22   A0A1A9WPH0   A0A1W4W3C6   A0A2M4BXK9   A0A1A9YBH4   A0A2M4BXR4   T1DPN9   A0A2M4BXL0   A0A1A9Z9Z0   A0A1A9UFR8   B4PKW3   Q9VD72   D3TRG6   B4G626   A0A1B0G569   B4NHP3   B4QZA1   B3LVI2   Q29AQ9   B4HM53   A0A182FJV3   A0A1I8P7G3   A0A2M4AJN9   A0A3B0JKU4   B4LWP8   A0A069DQ58   A0A023F8R0   A0A0V0GBT1   B3P8R7   A0A2M3Z9K1   A0A2M4CZG0  

PDB

2ZME     E-value=3.04026e-76,     Score=723

KEGG

732933    K12188 ESCRT-II complex subunit VPS22 | (RefSeq) EAP30, Vps22; ELL complex EAP30 subunit

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0043328   GO:0000814   GO:0071985   GO:0008283   GO:0042981   GO:0045450   GO:0036258   GO:0043162   GO:0032509   GO:0008104  

PANTHER

PTHR12806  

Length:

249

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15713

Exp number, first 60 AAs:

0

Total prob of N-in:

0.12424

outside

1  -  249

 

 

Pi

220.422588

Theta

184.534642

Tajima's D

0.667504

CLR

0

CSRT

0.559322033898305

Interpretation

Uncertain