Silkworm Genome Informatics Database

Gene

KWMTBOMO08446

Pre Gene Modal

BGIBMGA009402

Annotation

MESH_BOMMO_RecName:_Full%3DProtein_mesh

Location

Bomo_Chr14(-):9340091-9340521 View in EpiBrowser

Full name

Protein mesh

Location in the cell

Extracellular Reliability : 1.405 Nuclear Reliability : 1.65

CDS

ATGGGTGTTAAAATCAAATTAGTTTTAGCGGTGGTCCTAATTTTAAGTGCCAATGTTTTAGGACAAGACGAAATAGTTAATGATACGGAAAGTACTGTGAGTGTTACCGAAGCACAGGTAGTGGAACTTGAAACGGATGTTAAAGAGAAAGAAGATGAGACATTTGAAGAAACGTCACCGGTAGAATTGCTGCCGGATACTGAAAATTTAGAAGTGCGAAGCGGGAAGTACCAGCTCAACGATGGCTTAGTTGGAGAAGAGCCAGTTAACCTTGAAGCTGTCGATTTCAACTCGAACAATGTTGAAAGCGAAAAGCAACTCCTCTCGCCACCAAGTACTACGGTCGTCACCGGAACTGACTATTGTAAGTGTTTTCTTTTTAAATAA

Protein

MGVKIKLVLAVVLILSANVLGQDEIVNDTESTVSVTEAQVVELETDVKEKEDETFEETSPVELLPDTENLEVRSGKYQLNDGLVGEEPVNLEAVDFNSNNVESEKQLLSPPSTTVVTGTDYCKCFLFK

Description

May be required for the proper organization of smooth septate junctions and for the barrier function of the midgut epithelium.

Keywords

Cell junction Cell membrane Complete proteome Disulfide bond Membrane Phosphoprotein Reference proteome Signal Sushi Transmembrane Transmembrane helix

Feature

chain Protein mesh

Uniprot

H9JIQ1 A0A2A4K0U0 A0A2A4JZQ1 A0A437BHE3 A0A1E1WUZ1 A0A212FC21 + More
A0A1E1WKK5 A0A0N1IBZ5 A0A0N0PAJ1

Pubmed

19121390 22854041 22118469 26354079

EMBL

NWSH01000337 PCG77290.1 PCG77289.1 RSAL01000059 RVE49675.1 GDQN01000270 + More
JAT90784.1 AGBW02009237 OWR51289.1 GDQN01003663 JAT87391.1 KQ459986 KPJ18828.1 KQ458751 KPJ05298.1

Proteomes

UP000005204 UP000218220 UP000283053 UP000007151 UP000053240 UP000053268 + More

PRIDE

H9JIQ1

Pfam

PF06119   NIDO        + More
PF03782   AMOP
PF00094   VWD
PF00084   Sushi

Interpro

IPR013783   Ig-like_fold        + More
IPR014756   Ig_E-set
IPR005533   AMOP_dom
IPR035976   Sushi/SCR/CCP_sf
IPR003886   NIDO_dom
IPR001846   VWF_type-D
IPR000436   Sushi_SCR_CCP_dom

SUPFAM

SSF57535 SSF57535 + More
SSF81296 SSF81296

Gene 3D

2.60.40.10

CDD

cd00033 CCP

ProteinModelPortal

H9JIQ1 A0A2A4K0U0 A0A2A4JZQ1 A0A437BHE3 A0A1E1WUZ1 A0A212FC21 + More
A0A1E1WKK5 A0A0N1IBZ5 A0A0N0PAJ1

KEGG

101741952 no KO assigned | (RefSeq) protein mesh

GO

GO:0007160 GO:0016021 GO:0005918 GO:0016328

Subcellular location

Membrane
Cell junction
Septate junction
Lateral cell membrane

SignalP

Position: 1 - 21, Likelihood: 0.994822

Length:

128

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.73282

Exp number, first 60 AAs:

0.73205

Total prob of N-in:

0.16068

outside

1 - 128

Pi

317.650248

Theta

212.960892

Tajima's D

1.362475

CLR

0

CSRT

0.75611219439028

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics