Gene

KWMTBOMO08440  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009411

Annotation

ribosomal_protein_S16_[Bombyx_mori]

Location

Bomo_Chr14(+):9191382-9195678      View in EpiBrowser

Full name

40S ribosomal protein S16       + More
30S ribosomal protein S9      

Location in the cell

Cytoplasmic   Reliability : 2.774

CDS

ATGGCTGCTGTGCAGGAGGCAAGACGTGAGCCCATCCAGGCCGTCCAAGTATTCGGACGTAAGAAAACCGCCACCGCAGTTGCGTATTGCAAGCGTGGTCATGGAATGCTGCGTGTAAACGGGCGCCCATTGGACTTGGTTGAGCCCAGACTGCTGCAGTACAAACTTCAGGAACCTATCCTTTTGCTCGGCAAGGAAAAATTCTCTATGGTTGACATCAGAGTGACAGTCAAGGGTGGTGGTCATGTAGCACAAGTTTACGCTATCAGACAAGCTATTTCAAAGGCTCTGATCGCCTTCTACCAGAAATATGTAGACGAAGCCTCAAAGAAGGAAATCAAAGACATCCTAGTACAATACGATAGGAGTTTGCTGGTGGCTGACCCGCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCCAGGTGCCCGTGCCAGATACCAGAAATCTTACCGTTAA

Protein

MAAVQEARREPIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR

Similarity

Belongs to the universal ribosomal protein uS9 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  40S ribosomal protein S16

Uniprot

Q5UAM6   H9JIR0   A0A437AXC5   S4PV75   A0A2A4JCR9   Q95V31   + More
D1LYN8   A0A3G1T1K6   I4DLV6   I4DIJ6   A0A0N1IPX7   A7KCX5   G0ZED7   A0A212FC29   E7DZ18   A0A2A4JCC1   A0A2H1VI47   B5A7F4   A0A0K8W5P1   A0A034VD08   B3MED5   B4LPS9   B4KQI0   B4J9C2   A0A1A9XVB4   A0A1A9UYF4   A0A1A9WNA1   A0A1W4VQ38   B4I863   B3NLJ1   B4QHJ0   A0A0B4LG52   Q6XIM9   Q9W237   A0A2A3ECP8   V9IGT5   A0A088A612   A0A2A4AWB1   A0A3B0JG54   B4GC15   B4N5M8   A0A1L8EAF5   T1PHN7   A0A1L8EHC2   A0A1L8EAB4   Q290H8   A0A1I8PPB5   A0A1I8M3V8   A0A154P408   W8CAB6   A0A0L7QMK8   A0A0M9A4K6   A0A0K8TPT1   E2BD95   A0A310SSU3   A0A151J943   A0A0M4EC26   A0A0L0CIW2   A0A0J7NQG0   A0A158NBW2   E2AR26   A0A195BEY5   A2IAA5   A0A1D1XV15   A0A067RPC8   A0A2P8YG09   F4X8C8   A0A1B6DBB3   T1DH80   A0A0C9QTE2   E9J6A4   R4WE25   A0A1Q3FA00   B0WLQ7   A0A195FKU6   A0A151X9K3   A0A023EGQ2   P62251   K7JNH2   A0A1L8E9Z7   A0A2R7X6L0   A0A1B6LGU1   Q5MIR8   A0A1L8DRF8   Q56FG2   A0A232FJ47   A0A026X3M2   A0A0X7YDR0   A0A1L8EHH8   A0A1B6JTP2   D3TS86   A0A1B6G9C8   A0A336M9J3   D1FPN4   A0A182MXZ1   A0A182JY63   A0A1Y1MZZ4   A0A182P9F6   A0A182T3F3   A0A182Q235  

Pubmed

19121390    23622113    14668217    22651552    26354079    17603110    + More
22118469    25348373    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    14525923    17550304    12537569    23636399    15632085    25315136    24495485    26369729    20798317    26108605    21347285    17437641    24845553    29403074    21719571    24330624    21282665    23691247    24945155    26483478    17510324    20075255    17244540    28648823    24508170    30249741    20353571    20441151    28004739   

EMBL

AY769332    AAV34874.1    BABH01032890    RSAL01000297    RVE42804.1    GAIX01009028    + More
JAA83532.1    NWSH01001996    PCG69488.1    AF429981    GU084312    ACY95345.1    MG992439    AXY94877.1    AK402274    BAM18896.1    AK401114    KQ458751    BAM17736.1    KPJ05303.1    KQ459986    KPJ18836.1    EF207967    ABS57443.1    JF265015    AEL28846.1    AGBW02009237    OWR51283.1    HQ424721    ADT80665.1    PCG69489.1    ODYU01002686    SOQ40509.1    EU818707    ACF35258.1    GDHF01005873    JAI46441.1    GAKP01018563    JAC40389.1    CH902619    EDV36541.1    CH940648    EDW61269.1    CH933808    EDW10320.1    CH916367    EDW01403.1    CH480824    EDW56788.1    CH954179    EDV54907.1    CM000362    CM002911    EDX08219.1    KMY95813.1    AE013599    KX532104    AHN56526.1    ANY27914.1    AY231801    AY232065    CM000158    AAR09824.1    EDW91804.1    AY070671    KZ288305    PBC28791.1    JR041913    AEY59529.1    NWMT01000092    PCC99695.1    OUUW01000001    SPP74330.1    CH479181    EDW32358.1    CH964154    EDW79667.1    GFDG01003246    JAV15553.1    KA647403    AFP62032.1    GFDG01000692    JAV18107.1    GFDG01003247    JAV15552.1    CM000071    EAL25384.2    KQ434809    KZC06562.1    GAMC01001434    JAC05122.1    KQ414894    KOC59781.1    KQ435736    KOX77107.1    GDAI01001219    JAI16384.1    GL447585    EFN86323.1    EFN86352.1    KQ760706    OAD59338.1    KQ979433    KYN21554.1    CP012524    ALC41202.1    JRES01000319    KNC32343.1    LBMM01002551    KMQ94675.1    ADTU01011382    GL441846    EFN64172.1    KQ976500    KYM83138.1    EF179419    ABM55425.1    GDJX01021705    JAT46231.1    KK852506    KDR22490.1    PYGN01000626    PSN43190.1    GL888932    EGI57137.1    GEDC01014307    JAS22991.1    GALA01001391    JAA93461.1    GBYB01003917    JAG73684.1    GL768230    EFZ11651.1    AK418034    BAN21249.1    GFDL01010696    JAV24349.1    DS231989    EDS30622.1    KQ981491    KYN40971.1    KQ982373    KYQ57065.1    JXUM01012846    GAPW01005597    KQ560363    JAC08001.1    KXJ82809.1    AY552053    CH477271    GFDG01003248    JAV15551.1    KK857713    PTY27427.1    GEBQ01017066    JAT22911.1    AY826142    AAV90714.1    GFDF01005041    JAV09043.1    AY961538    AAX62440.1    NNAY01000172    OXU30327.1    KK107036    QOIP01000004    EZA61994.1    RLU23567.1    KC507313    AHB12436.1    GFDG01000694    JAV18105.1    GECU01005150    JAT02557.1    EZ424288    ADD20564.1    GECZ01026111    GECZ01021195    GECZ01010886    JAS43658.1    JAS48574.1    JAS58883.1    UFQS01000579    UFQT01000579    SSX05091.1    SSX25453.1    EZ419784    ACY69957.1    GEZM01016637    JAV91229.1    AXCN02002112   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053268    UP000053240    UP000007151    + More
UP000007801    UP000008792    UP000009192    UP000001070    UP000092443    UP000078200    UP000091820    UP000192221    UP000001292    UP000008711    UP000000304    UP000000803    UP000002282    UP000242457    UP000005203    UP000243750    UP000268350    UP000008744    UP000007798    UP000001819    UP000095300    UP000095301    UP000076502    UP000053825    UP000053105    UP000008237    UP000078492    UP000092553    UP000037069    UP000036403    UP000005205    UP000000311    UP000078540    UP000027135    UP000245037    UP000007755    UP000002320    UP000078541    UP000075809    UP000069940    UP000249989    UP000008820    UP000002358    UP000215335    UP000053097    UP000279307    UP000075884    UP000075881    UP000075885    UP000075901    UP000075886   

PRIDE

Q5UAM6    H9JIR0    Q95V31    Q9W237    A0A088A612    P62251    + More

Pfam

PF00380   Ribosomal_S9

Interpro

IPR020568   Ribosomal_S5_D2-typ_fold        + More
IPR020574   Ribosomal_S9_CS       
IPR014721   Ribosomal_S5_D2-typ_fold_subgr       
IPR000754   Ribosomal_S9       

SUPFAM

SSF54211   SSF54211       

Gene 3D

3.30.230.10    

ProteinModelPortal

Q5UAM6   H9JIR0   A0A437AXC5   S4PV75   A0A2A4JCR9   Q95V31   + More
D1LYN8   A0A3G1T1K6   I4DLV6   I4DIJ6   A0A0N1IPX7   A7KCX5   G0ZED7   A0A212FC29   E7DZ18   A0A2A4JCC1   A0A2H1VI47   B5A7F4   A0A0K8W5P1   A0A034VD08   B3MED5   B4LPS9   B4KQI0   B4J9C2   A0A1A9XVB4   A0A1A9UYF4   A0A1A9WNA1   A0A1W4VQ38   B4I863   B3NLJ1   B4QHJ0   A0A0B4LG52   Q6XIM9   Q9W237   A0A2A3ECP8   V9IGT5   A0A088A612   A0A2A4AWB1   A0A3B0JG54   B4GC15   B4N5M8   A0A1L8EAF5   T1PHN7   A0A1L8EHC2   A0A1L8EAB4   Q290H8   A0A1I8PPB5   A0A1I8M3V8   A0A154P408   W8CAB6   A0A0L7QMK8   A0A0M9A4K6   A0A0K8TPT1   E2BD95   A0A310SSU3   A0A151J943   A0A0M4EC26   A0A0L0CIW2   A0A0J7NQG0   A0A158NBW2   E2AR26   A0A195BEY5   A2IAA5   A0A1D1XV15   A0A067RPC8   A0A2P8YG09   F4X8C8   A0A1B6DBB3   T1DH80   A0A0C9QTE2   E9J6A4   R4WE25   A0A1Q3FA00   B0WLQ7   A0A195FKU6   A0A151X9K3   A0A023EGQ2   P62251   K7JNH2   A0A1L8E9Z7   A0A2R7X6L0   A0A1B6LGU1   Q5MIR8   A0A1L8DRF8   Q56FG2   A0A232FJ47   A0A026X3M2   A0A0X7YDR0   A0A1L8EHH8   A0A1B6JTP2   D3TS86   A0A1B6G9C8   A0A336M9J3   D1FPN4   A0A182MXZ1   A0A182JY63   A0A1Y1MZZ4   A0A182P9F6   A0A182T3F3   A0A182Q235  

PDB

4V6W     E-value=5.35537e-63,     Score=605

KEGG

693058    K02960 small subunit ribosomal protein S16e | (RefSeq) RpS16; ribosomal protein S16

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0005840   GO:0003735   GO:0006412   GO:0002181   GO:0022627   GO:0022626   GO:0003676   GO:0006182   GO:0051603   GO:0030145   GO:0016876   GO:0043039  

PANTHER

PTHR21569  

Length:

151

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01458

Exp number, first 60 AAs:

0

Total prob of N-in:

0.61363

inside

1  -  151

 

 

Pi

257.84519

Theta

202.046736

Tajima's D

0.942154

CLR

0

CSRT

0.644117794110294

Interpretation

Uncertain