Gene

KWMTBOMO08435  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009408

Annotation

PREDICTED:_DNA-directed_RNA_polymerase_III_subunit_RPC3_[Papilio_machaon]

Location

Bomo_Chr14(-):9119159-9128381      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.385 Mitochondrial   Reliability : 2.006

CDS

ATGTCACATCAGCTGGGCCGTGTTGTTTCTGTGATTCTCCAGAGATATTTTGGCGAGAATGTACAGAAAGTTGGCGACGATCTATTTACATATGGCAGTAAGCCCATTGCCTTATTAGTGAAGAGTACTGGTCTTTCCAGAATCAAGGTGGTAGAAAGTCTCCGAACGTTACTGAAGTATGATTTGGCAATGTTTGAACCAACTCCAAATGAAGTAATTGCAGATTACAGATTAATTCCGGAGAATGTGCTTTTGATGATTAGATATCCAAGGTATTTACTACAAATTAAAACGAAGTACGGTAGTGAAGCAGAAATATTGATTGAAGAGTTGTTACAAAAGGCATGTTCCACTGCTACCGTGCTATTAGTCTCCATTGCTGTTAAATATAAAGATGACAAGGAAAAGAACATGACTATAGTGAAACTAAAAGATATCTTTATAAGTCTGATAACCGCTGGTTACATACAGCAGGCATCTGTAGCTGAGTTGAAGGAAGGCAGCGAGATACCGACACTGGTGCCCGTCGCAACTATAACACCAGAGATTGATGTACGAGCTGTCATTAAAATTATGAATTCTGGAAATCTAGCTGAAAGTAGTGATAATGTGTACTGGAAAGTTAATTACGACAGGTTCCATCAGGATATCCGCGACGAAATTATGATCAAAGCAATCACAAGACGAATAGATGAAAACGCCGGTGAGCTTCTTCGTCATATGCTGCAACACATGTACCTGACGTCTCCGGCGTGGGCTGCAGAGTCTACACTAGTGCCGGCCGTGGAATTGAGGGAGGCTTGTCTCCGGGCCGCTGCTGACAAGCCCCTCTTGAATCAGTATTTCGATCAATATCTGAAGGTCTTAGAGGAGAGCGGGTGCGGCACGGTGCGGGCGGACGCGGGGGGGCGGGGGTACAGCGTGCGGGGGGCGGGCGCGGCGCGGGGGTGCCTGCTGGCGCTGCTGGAGGGGCTGGTCACGGAGAGACTGGGCTACAAGGCCGCCAGGATATTCAGAATAATTCTCGATAAGAAATATATAGAAGAGGATGACGTACAAAAAAACGCCATGCTACCAAATAAGGAATGCAAAGAGCTGTCGTATAAACTTTTAGAAGAGCATTTCATTAGTTTACAGCCAATGAGGAAAACCGCGTCGGCCGGCGGCATGAACAAGGCCGTCTATTTGTTCCATATTAATCTACACGACGTGGCACACACAGTGCAGGACATGTGCTACAAGGCTCTGGGCAACGTGTTGCGACGCGCGTCCCACGAGCGGGCGGCCCACGCGCGGCTGTTGGACAAGCAGCGCCGCGTGCGCAGCATAGTGCACGGCATGAGGCTGCGCGCCGAGCCGCAACAGAACATCGATGACGTTGAAGAAACGCTGACCCCGTCCGAACTAGCAGTACTGCAGGGCGTCGAGAAACGACTCAAACAGCTCAGCGCCGCTGAATTAGAAATCGATAAAAATCTATTTATACTGAAGTGGTACTTTATGTATACGCATTGA

Protein

MSHQLGRVVSVILQRYFGENVQKVGDDLFTYGSKPIALLVKSTGLSRIKVVESLRTLLKYDLAMFEPTPNEVIADYRLIPENVLLMIRYPRYLLQIKTKYGSEAEILIEELLQKACSTATVLLVSIAVKYKDDKEKNMTIVKLKDIFISLITAGYIQQASVAELKEGSEIPTLVPVATITPEIDVRAVIKIMNSGNLAESSDNVYWKVNYDRFHQDIRDEIMIKAITRRIDENAGELLRHMLQHMYLTSPAWAAESTLVPAVELREACLRAAADKPLLNQYFDQYLKVLEESGCGTVRADAGGRGYSVRGAGAARGCLLALLEGLVTERLGYKAARIFRIILDKKYIEEDDVQKNAMLPNKECKELSYKLLEEHFISLQPMRKTASAGGMNKAVYLFHINLHDVAHTVQDMCYKALGNVLRRASHERAAHARLLDKQRRVRSIVHGMRLRAEPQQNIDDVEETLTPSELAVLQGVEKRLKQLSAAELEIDKNLFILKWYFMYTH

Uniprot

H9JIQ7   A0A3S2NRN5   A0A0N1IMV8   A0A0N1IGL4   A0A212EPS1   D2A0B8   + More
A0A2J7PPT7   A0A1B0GJ49   A0A1B0EZN9   A0A067RF68   A0A182G1I4   A0A182H0L2   Q171Y0   A0A182YKI1   A0A336MMU8   A0A1Y1M8V1   A0A1B6HFR0   A0A182VX58   A0A182NA87   A0A182MP67   A0A084W1P1   A0A336MJX9   B0WS61   U4UK77   N6TZ50   A0A154P4H2   A0A182J711   N6UQH7   A0A182R3N2   A0A182HT80   A0A182QQQ1   A0A182LFC2   A0A182TM07   A0A182V557   Q7QC11   N6U3E8   A0A182XI93   A0A182JX78   A0A182PA62   A0A087ZRQ3   A0A0L7R636   A0A1J1J894   A0A2M4ARR6   W5JHC4   A0A0L0CNV6   A0A182F8C9   A0A146KZX2   A0A0A9WE05   A0A0M9A4B3   A0A2A3EP69   B4PPB0   A0A1W4UN37   B4HGW7   B3P4A8   B4QS98   A0A232F5S4   B3M2S2   B4GZ76   A0A195F8J9   Q9VG60   K7J6S8   Q29B17   R4G8T2   A0A1I8MDW6   A0A3B0K5X2   A0A069DZ68   A0A1A9ZHC0   A0A1A9UCU3   A0A0V0G8I6   A0A1B0G3F3   B4KAA4   A0A0A1WLU6   A0A1I8P2D9   A0A0K8WFB9   A0A1A9Y8U7   A0A1B0BG50   F4WJY8   A0A034WCU0   A0A195BHZ1   A0A158N9D4   A0A1A9X417   B4M6A3   E2ANZ2   W8B7M2   B4JI82   A0A1B6GJ47   A0A026VTN7   A0A423U8Y7   B4N8R8   A0A1B6G3S8   A0A224XPV2   A0A195E6W0   A0A0M4ELL2   A0A1W4XJI8   A0A151XI39  

Pubmed

19121390    26354079    22118469    18362917    19820115    24845553    + More
26483478    17510324    25244985    28004739    24438588    23537049    20966253    12364791    14747013    17210077    20920257    23761445    26108605    26823975    25401762    17994087    17550304    28648823    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20075255    15632085    25315136    26334808    25830018    21719571    25348373    21347285    20798317    24495485    24508170    30249741   

EMBL

BABH01032885    RSAL01000297    RVE42807.1    KQ459256    KPJ02071.1    KQ460426    + More
KPJ14772.1    AGBW02013418    OWR43464.1    KQ971338    EFA02494.1    NEVH01022644    PNF18354.1    AJWK01019308    AJWK01019309    AJWK01019310    AJWK01019311    AJVK01007422    KK852672    KDR18768.1    JXUM01023447    KQ560661    KXJ81389.1    JXUM01101474    KQ564651    KXJ71958.1    CH477443    EAT40806.1    UFQS01001349    UFQT01001349    SSX10467.1    SSX30153.1    GEZM01037064    JAV82219.1    GECU01034139    JAS73567.1    AXCM01010392    ATLV01019399    KE525269    KFB44135.1    UFQS01002094    UFQT01001174    UFQT01002094    SSX13212.1    SSX29289.1    DS232065    EDS33684.1    KB632337    ERL92863.1    APGK01003070    KB735104    ENN83448.1    KQ434814    KZC06816.1    APGK01007669    KB737396    ENN83031.1    APCN01000421    AXCN02000218    AAAB01008859    EAA08103.3    APGK01041235    KB740992    ENN76090.1    KQ414648    KOC66231.1    CVRI01000070    CRL07129.1    GGFK01010143    MBW43464.1    ADMH02001252    ETN63461.1    JRES01000232    KNC33139.1    GDHC01016738    JAQ01891.1    GBHO01036922    GBRD01006522    JAG06682.1    JAG59299.1    KQ435737    KOX76947.1    KZ288202    PBC33528.1    CM000160    EDW97116.1    CH480815    EDW42438.1    CH954181    EDV49353.1    CM000364    EDX13194.1    NNAY01000856    OXU26186.1    CH902617    EDV42393.1    CH479198    EDW28094.1    KQ981727    KYN36701.1    AE014297    AY051718    AAF54828.2    AAK93142.1    AAZX01000215    CM000070    EAL27182.1    ACPB03006727    GAHY01000427    JAA77083.1    OUUW01000005    SPP81399.1    GBGD01001165    JAC87724.1    GECL01001787    JAP04337.1    CCAG010018501    CH933806    EDW14591.1    GBXI01015456    GBXI01014787    JAC98835.1    JAC99504.1    GDHF01002532    JAI49782.1    JXJN01013752    GL888187    EGI65510.1    GAKP01006453    JAC52499.1    KQ976476    KYM83850.1    ADTU01009481    CH940652    EDW59179.1    GL441439    EFN64824.1    GAMC01013511    GAMC01013510    GAMC01013507    JAB93048.1    CH916369    EDV92963.1    GECZ01007324    JAS62445.1    KK108118    QOIP01000005    EZA46881.1    RLU22415.1    QCYY01000426    ROT85163.1    CH964232    EDW81519.1    GECZ01012679    JAS57090.1    GFTR01006397    JAW10029.1    KQ979592    KYN20584.1    CP012526    ALC45251.1    ALC47182.1    KQ982093    KYQ60072.1   

Proteomes

UP000005204    UP000283053    UP000053268    UP000053240    UP000007151    UP000007266    + More
UP000235965    UP000092461    UP000092462    UP000027135    UP000069940    UP000249989    UP000008820    UP000076408    UP000075920    UP000075884    UP000075883    UP000030765    UP000002320    UP000030742    UP000019118    UP000076502    UP000075880    UP000075900    UP000075840    UP000075886    UP000075882    UP000075902    UP000075903    UP000007062    UP000076407    UP000075881    UP000075885    UP000005203    UP000053825    UP000183832    UP000000673    UP000037069    UP000069272    UP000053105    UP000242457    UP000002282    UP000192221    UP000001292    UP000008711    UP000000304    UP000215335    UP000007801    UP000008744    UP000078541    UP000000803    UP000002358    UP000001819    UP000015103    UP000095301    UP000268350    UP000092445    UP000078200    UP000092444    UP000009192    UP000095300    UP000092443    UP000092460    UP000007755    UP000078540    UP000005205    UP000091820    UP000008792    UP000000311    UP000001070    UP000053097    UP000279307    UP000283509    UP000007798    UP000078492    UP000092553    UP000192223    UP000075809   

PRIDE

H9JIQ7    Q9VG60   

Pfam

PF05645   RNA_pol_Rpc82        + More
PF08221   HTH_9
PF02002   TFIIE_alpha
PF00566   RabGAP-TBC

Interpro

IPR036388   WH-like_DNA-bd_sf        + More
IPR013197   RNA_pol_III_RPC82-rel_HTH       
IPR039748   RPC3       
IPR008806   RNA_pol_III_Rpc82_C       
IPR024550   TFIIEa/SarR/Rpc3_HTH_dom       
IPR000195   Rab-GTPase-TBC_dom       
IPR035969   Rab-GTPase_TBC_sf       

SUPFAM

SSF47923   SSF47923       

Gene 3D

1.10.10.10    

ProteinModelPortal

H9JIQ7   A0A3S2NRN5   A0A0N1IMV8   A0A0N1IGL4   A0A212EPS1   D2A0B8   + More
A0A2J7PPT7   A0A1B0GJ49   A0A1B0EZN9   A0A067RF68   A0A182G1I4   A0A182H0L2   Q171Y0   A0A182YKI1   A0A336MMU8   A0A1Y1M8V1   A0A1B6HFR0   A0A182VX58   A0A182NA87   A0A182MP67   A0A084W1P1   A0A336MJX9   B0WS61   U4UK77   N6TZ50   A0A154P4H2   A0A182J711   N6UQH7   A0A182R3N2   A0A182HT80   A0A182QQQ1   A0A182LFC2   A0A182TM07   A0A182V557   Q7QC11   N6U3E8   A0A182XI93   A0A182JX78   A0A182PA62   A0A087ZRQ3   A0A0L7R636   A0A1J1J894   A0A2M4ARR6   W5JHC4   A0A0L0CNV6   A0A182F8C9   A0A146KZX2   A0A0A9WE05   A0A0M9A4B3   A0A2A3EP69   B4PPB0   A0A1W4UN37   B4HGW7   B3P4A8   B4QS98   A0A232F5S4   B3M2S2   B4GZ76   A0A195F8J9   Q9VG60   K7J6S8   Q29B17   R4G8T2   A0A1I8MDW6   A0A3B0K5X2   A0A069DZ68   A0A1A9ZHC0   A0A1A9UCU3   A0A0V0G8I6   A0A1B0G3F3   B4KAA4   A0A0A1WLU6   A0A1I8P2D9   A0A0K8WFB9   A0A1A9Y8U7   A0A1B0BG50   F4WJY8   A0A034WCU0   A0A195BHZ1   A0A158N9D4   A0A1A9X417   B4M6A3   E2ANZ2   W8B7M2   B4JI82   A0A1B6GJ47   A0A026VTN7   A0A423U8Y7   B4N8R8   A0A1B6G3S8   A0A224XPV2   A0A195E6W0   A0A0M4ELL2   A0A1W4XJI8   A0A151XI39  

PDB

5AFQ     E-value=5.15683e-56,     Score=552

KEGG

101741060    K03023 DNA-directed RNA polymerase III subunit RPC3 | (RefSeq) DNA-directed RNA polymerase III subun

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0006351   GO:0003899   GO:0005666   GO:0003697   GO:0006383   GO:0003677   GO:0003676   GO:0006182   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

PANTHER

PTHR12949  

Length:

504

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0487400000000002

Exp number, first 60 AAs:

0.00042

Total prob of N-in:

0.00422

outside

1  -  504

 

 

Pi

300.01948

Theta

190.192861

Tajima's D

1.934754

CLR

13.040873

CSRT

0.872006399680016

Interpretation

Uncertain