Silkworm Genome Informatics Database

Gene

KWMTBOMO08430 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009409

Annotation

PREDICTED:_cleavage_and_polyadenylation_specificity_factor_subunit_CG7185_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr14(-):8919863-8931509 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.597

CDS

ATGGCGGACGGCGATGTCGATATAGATTTGTACGCCGATGATATAGAATCCGATTTTAATCGCCAGGATGAATTTGCTGGCGAAAATGTGGATTTATATGACGACGTGATCTCAGCACCAGCTTCGAAGCCCGAGGACGGTGACGGTCCTCCCATCATTGCTCCAAACCAGCATCCACCTGAGGAAACTAACGGCAACGCCTCATACCACGGCCCGGTTCACGGACATCATGGCCGCCGTTTTCAACTTTACGTCGGCAACCTAACATGGTGGGCAACGGACCAAGATATTGCGAACGCGATCTCGGATGTCGGTGTCTCCGATTTTCAAGATGTGAAGTTCTTTGAGAACAGAGCCAATGGTCAGTCCAAAGGATTCTGCGTTATATCTCTCGGTTCAGATCAATCAGTCAGGATGGTGATGGAACGTCTTTCTAAGAAGGAGATACACGGGCAACATCCAGTAGTTACATTGCCTACTAAACAGGCGTTGAATCAGTTTGAAAGTCAGTCAAAGACCAGGTCGACGCCTCCTGGTCCCAATAATCCTGGAATGAGAGGACCCCATCCAGGCGGGCCGCCTGGTCCTCATCCCGGAGAATTTTTTGGTGGGGGACCGAACGGTCCAGGTGGGGGCGGACCTCGTATGATGCTCCCAGGTCCGGGTCCGCACCAGCTTCGTGGGCCGCCGCCGCACCACATGGGCCCACACCAGGGCGGGCCGCATCCCATGCAACATCAGCCGCAGCCGCACCAGGCCCCGCCACACCGGCCCCCTATGCAGTTTGCGGGCCCTCCGCAGATGCAACGCGCGCCGGGCCCGCGTCCGCCGCCTCCCGACTGGGCTGCGCGAGCGCCGCATCCTATGTCTCAGCCCGCGCCTCATTATGGACCCCCCCATCATGGAATGCCGCATCAGATGCCACCACCTCATCCTCAACCCGGCGCACAGGGCATGCCGCCTCCGCACCAGTTGCCGCCGCACCAGCCGCCGCGGGGACCGGCGCCCATGCCGCAGCATCCTGTAATACCTGGAGCTCCAGCACCACACGTGAATCCTGCGTTCTTCAACCAGCAGCCACCGTCGCAGCCGCCGCCAATGCAGGCCCCGCAACCTGGACCACCCGGTCCAGGTGCTCCGTACGGTCATCCAGCCCATGGAGCACCACCTCCAGCACAAGGGCCTCCACCCGGGTCTAGACAACCGTACGGTCGGCCACCACAGAGCTATCCGCCTCAAGCGGATCCGGCTCGTCCCCCGCACCACCCGGCACCCATGGTCCCACAGCACGCGGCCTCCCTGGCGCCCCCCATGCCGGTCATCAGCGAGGCCGAGTTCGAAGAGGTGATGAGCAGGAACCGCACCGTCTCCTCCAGTGCCATTGCTCGGGCTGTCAGTGACGCTGCCGCTGGCGAGTACGCCTCCGCCATCGAGACGCTCGTTACCGCCATATCACTCATTAAACAGAGCAAGGTGGCGCAAGACGACCGCTGCAAGATTCTGATCTCGTCGCTGCAAGACACGCTGCACGGCGTCGAGACGAAGTCTTACAGCAGCGGCGAGCGGTCCCGCCGCTCCCGGTCCCGCGAGCGCGAGCCGCGACACCACCGCGCCCCGCGCCGCCGCGACCGCTCTTCCAGCCGCTACCGGGACCGCAGCCGCGACCGAGAGGATAGGGACAGGTACAGGGAACGGTCGAGAGATCGCGACCGCGAACGTGAACGTGACGCGTATTACAGGGATTACCGTGAGAGGGAGCGCGAGAGGTCTCGCTCGAGGGATCGCGATCGTGCTGATCATTACAACAGGGGACACAGTCGTGAGGAGAGGGCACGTAAATCTCCAGCTGAAGCGACAGCAGAGGGAACCACAGCCGAGGCCGGGTCGAAGAGCCGCAGCACTGGAGCGCCGTACTACGACGAGCGGTACAGGGAGAGACGCGACAGAGACCCGCCGCCCGCGGATCGAGATCGCGACCGAGACCATCGCAGGGACGCTAGACACTAG

Protein

MADGDVDIDLYADDIESDFNRQDEFAGENVDLYDDVISAPASKPEDGDGPPIIAPNQHPPEETNGNASYHGPVHGHHGRRFQLYVGNLTWWATDQDIANAISDVGVSDFQDVKFFENRANGQSKGFCVISLGSDQSVRMVMERLSKKEIHGQHPVVTLPTKQALNQFESQSKTRSTPPGPNNPGMRGPHPGGPPGPHPGEFFGGGPNGPGGGGPRMMLPGPGPHQLRGPPPHHMGPHQGGPHPMQHQPQPHQAPPHRPPMQFAGPPQMQRAPGPRPPPPDWAARAPHPMSQPAPHYGPPHHGMPHQMPPPHPQPGAQGMPPPHQLPPHQPPRGPAPMPQHPVIPGAPAPHVNPAFFNQQPPSQPPPMQAPQPGPPGPGAPYGHPAHGAPPPAQGPPPGSRQPYGRPPQSYPPQADPARPPHHPAPMVPQHAASLAPPMPVISEAEFEEVMSRNRTVSSSAIARAVSDAAAGEYASAIETLVTAISLIKQSKVAQDDRCKILISSLQDTLHGVETKSYSSGERSRRSRSREREPRHHRAPRRRDRSSSRYRDRSRDREDRDRYRERSRDRDRERERDAYYRDYRERERERSRSRDRDRADHYNRGHSREERARKSPAEATAEGTTAEAGSKSRSTGAPYYDERYRERRDRDPPPADRDRDRDHRRDARH

Uniprot

NA

ProteinModelPortal

NA

PDB

3Q2T E-value=3.14237e-32, Score=348

KEGG

101740584 K14398 cleavage and polyadenylation specificity factor subunit 6/7 | (RefSeq) cleavage and polyadeny

PATHWAY

03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0000166 GO:0003676 GO:0045454 GO:0006182 GO:0051603 GO:0030145 GO:0006412 GO:0016876 GO:0043039

Length:

668

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00265

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00025

outside

1 - 668

Pi

252.003729

Theta

173.240747

Tajima's D

1.349975

CLR

0.192123

CSRT

0.747162641867907

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics