Gene

KWMTBOMO08427

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr14(+):8847140-8847605      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.847 Nuclear   Reliability : 1.897

CDS

ATGTGGTGCTACCGTCGCATGTTACGCATTGGTTGGACGCAGAGGGTCAGGAACGAAACCGTGCTTCAGCGCGTTCATATGTCCCGGAAAATGCTGCCTGCTATCAAAAAGCGCAAGATAGAGTATCTCGGCCACGTGCTCAGGAACGATCGATACATGCTACTCCAGCTGATAATTATGGGCAAAGTGGACGGAAAGAGACGTGCTGGGCGAAGAAAGAAATCATGGCTCCGGAATATCCGGGAGTGGACCGGTATTGCCTCCGTCGAACAGCTGTTCCGGCTGGCTGCAGATAAAAACGAATATAGAAAGCTAACGGCCAACCTTCAGGATTGA

Protein

MWCYRRMLRIGWTQRVRNETVLQRVHMSRKMLPAIKKRKIEYLGHVLRNDRYMLLQLIIMGKVDGKRRAGRRKKSWLRNIREWTGIASVEQLFRLAADKNEYRKLTANLQD

Uniprot

D5LB38   A0A2A4J795   A0A151IIH7   A0A0A9VZT6   A0A146L0Z1   A0A0N0PCF3   + More
A0A437BHL5   A0A0K8T3U8   A0A2S2QJK3   A0A0J7KRQ5   A0A0A9XCF5   A0A2H1V1U0   A0A0A9XXL9   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A2S2PW26   A0A2S2NMQ2   A0A2S2P9Y7   J9LIJ7   H3B2Y3   W4Y921   X1D4L4   A0A2W1BSS7   H2YWZ6   A0A2W1BIM8   H2YWZ5   A0A2A4JXP9   A0A0B7BVF8   A0A0B7BT11   A0A0B7BUS3   A0A0B7BTW4   A0A433T4Y3   A0A2S2PJ33   A0A0B7BVF2   A0A3S1HJZ0   A0A0B7BT80   A0A0B7BSZ9   A0A0B7BUR9   A0A2J7RM57   A0A0B7BSC2   A0A3S3RLW1   A0A3S3NR17   A0A0J7KK86   A0A443QKU0   A0A2W1BSK1   A0A2S2PJ80   A0A067QXS5   A0A3S1CD12   A0A076N1B6   A0A2J7QV96   A0A3S0ZE77   A0A067QWA3   A0A3S3P648   A0A146LQM2   A0A0A9WMP5   A0A0B7BVD9   A0A3S1AZH6   A0A0B7BVD3   A0A0B7BSB6   A0A3S1A2L0   A0A2J7QX30   A0A2J7RG81   A0A2J7PNF2   A0A2J7PGF8   A0A076N3Z4   A0A2J7R581   A0A402F481   A0A2J7Q6A8   A0A2J7PVX9   A0A2S2PZ46   A0A433SUS5   A0A0A9WVQ5   A0A146LUY8  

Pubmed

20470440    25401762    26823975    26354079    9215903    24624126    + More
28756777    24845553   

EMBL

GU815089    ADF18552.1    NWSH01002736    PCG67606.1    KQ977522    KYN02133.1    + More
GBHO01041897    JAG01707.1    GDHC01017214    JAQ01415.1    KQ460652    KPJ12975.1    RSAL01000055    RVE49910.1    GBRD01005612    JAG60209.1    GGMS01008711    MBY77914.1    LBMM01003995    KMQ92919.1    GBHO01028834    JAG14770.1    ODYU01000306    SOQ34818.1    GBHO01020011    GDHC01013600    JAG23593.1    JAQ05029.1    LBMM01001656    KMQ95932.1    NWSH01001998    PCG69477.1    GGMS01004979    MBY74182.1    GGMS01000367    MBY69570.1    GGMR01005851    MBY18470.1    GGMR01013640    MBY26259.1    ABLF02012409    ABLF02012412    AFYH01119920    AAGJ04161766    BART01031562    GAH15691.1    KZ149985    PZC75696.1    KZ150019    PZC74919.1    NWSH01000469    PCG76200.1    HACG01049496    CEK96361.1    HACG01049494    HACG01049495    CEK96359.1    CEK96360.1    HACG01049256    CEK96121.1    HACG01049492    CEK96357.1    RQTK01000650    RUS76594.1    GGMR01016842    MBY29461.1    HACG01049490    HACG01049491    CEK96355.1    CEK96356.1    RQTK01000360    RUS81011.1    HACG01049244    HACG01049247    CEK96109.1    CEK96112.1    HACG01049248    HACG01049253    CEK96113.1    CEK96118.1    HACG01049251    HACG01049252    CEK96116.1    CEK96117.1    NEVH01002574    PNF41923.1    HACG01049254    CEK96119.1    NCKU01008836    RWS01655.1    NCKU01012182    RWS00163.1    LBMM01006413    KMQ90631.1    NCKU01006316    RWS03634.1    KZ149912    PZC78062.1    GGMR01016881    MBY29500.1    KK853131    KDR10935.1    RQTK01000058    RUS89376.1    KF881087    AIJ27486.1    NEVH01010478    PNF32508.1    RQTK01000625    RUS76894.1    KK852870    KDR14607.1    NCKU01004395    RWS06003.1    GDHC01009154    JAQ09475.1    GBHO01034555    JAG09049.1    HACG01049255    CEK96120.1    RQTK01000685    RUS76136.1    HACG01049245    CEK96110.1    HACG01049249    CEK96114.1    RQTK01000357    RUS81065.1    NEVH01009398    PNF33135.1    NEVH01004403    PNF39833.1    NEVH01023953    PNF17874.1    NEVH01025635    PNF15414.1    KF881086    AIJ27485.1    NEVH01007395    PNF35970.1    BDOT01000101    GCF51276.1    NEVH01017534    PNF24114.1    NEVH01020940    PNF20497.1    GGMS01001437    MBY70640.1    RQTK01000991    RUS72979.1    GBHO01033031    GBHO01015473    GBHO01015472    GBHO01015471    GBHO01015469    GBHO01013134    GBHO01013133    GBHO01013129    GBHO01013128    JAG10573.1    JAG28131.1    JAG28132.1    JAG28133.1    JAG28135.1    JAG30470.1    JAG30471.1    JAG30475.1    JAG30476.1    GDHC01007098    GDHC01001590    JAQ11531.1    JAQ17039.1   

Proteomes

UP000218220    UP000078542    UP000053240    UP000283053    UP000036403    UP000007819    + More
UP000008672    UP000007110    UP000007875    UP000271974    UP000235965    UP000285301    UP000027135    UP000288954   

PRIDE

D5LB38   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR036640   ABC1_TM_sf       
IPR000637   HMGI/Y_DNA-bd_CS       
IPR036846   GM2-AP_sf       

SUPFAM

SSF56219   SSF56219        + More
SSF90123   SSF90123       
SSF63707   SSF63707       

Gene 3D

3.60.10.10     2.70.220.10    

ProteinModelPortal

D5LB38   A0A2A4J795   A0A151IIH7   A0A0A9VZT6   A0A146L0Z1   A0A0N0PCF3   + More
A0A437BHL5   A0A0K8T3U8   A0A2S2QJK3   A0A0J7KRQ5   A0A0A9XCF5   A0A2H1V1U0   A0A0A9XXL9   A0A0J7KZE8   A0A2A4JBK9   A0A2S2QAF2   A0A2S2PW26   A0A2S2NMQ2   A0A2S2P9Y7   J9LIJ7   H3B2Y3   W4Y921   X1D4L4   A0A2W1BSS7   H2YWZ6   A0A2W1BIM8   H2YWZ5   A0A2A4JXP9   A0A0B7BVF8   A0A0B7BT11   A0A0B7BUS3   A0A0B7BTW4   A0A433T4Y3   A0A2S2PJ33   A0A0B7BVF2   A0A3S1HJZ0   A0A0B7BT80   A0A0B7BSZ9   A0A0B7BUR9   A0A2J7RM57   A0A0B7BSC2   A0A3S3RLW1   A0A3S3NR17   A0A0J7KK86   A0A443QKU0   A0A2W1BSK1   A0A2S2PJ80   A0A067QXS5   A0A3S1CD12   A0A076N1B6   A0A2J7QV96   A0A3S0ZE77   A0A067QWA3   A0A3S3P648   A0A146LQM2   A0A0A9WMP5   A0A0B7BVD9   A0A3S1AZH6   A0A0B7BVD3   A0A0B7BSB6   A0A3S1A2L0   A0A2J7QX30   A0A2J7RG81   A0A2J7PNF2   A0A2J7PGF8   A0A076N3Z4   A0A2J7R581   A0A402F481   A0A2J7Q6A8   A0A2J7PVX9   A0A2S2PZ46   A0A433SUS5   A0A0A9WVQ5   A0A146LUY8  

KEGG

101739063    no KO assigned | (RefSeq) uncharacterized LOC101739063

GO

GO:0003964   GO:0004519   GO:0016021   GO:0006355  

Length:

111

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01983

Exp number, first 60 AAs:

0.00279

Total prob of N-in:

0.59319

inside

1  -  111

 

 

Pi

7.00933

Theta

15.790354

Tajima's D

-1.736604

CLR

27.065887

CSRT

0.032248387580621

Interpretation

Uncertain