Gene

KWMTBOMO08422

Pre Gene Modal

BGIBMGA009311

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like_[Crassostrea_gigas]

Location

Bomo_Chr14(-):8586174-8589802      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.16

CDS

ATGGATTCGTTAAAACCACCGCCACCATTATGCCTCATGGGCGACTTGAAACAAAATTTTCAAAAATGGACACAGCAATATGATATTTATATGATTGCTAGCGGGACGGAAGGTGATGAAAAAATTAAAGATAAGCAGAAAAAGGCAATCTATTTGCACTGCCTAGGTGCAGAAGCACTAACCATATACAATGGTTTTAAGAACAAAGAAAAGTTATCTTATGTGGAAGTAAAACAGAAGTTTAATGAATATTGTTCGCCACCCGGAAATGAAACTTTTAGTAGACATGTCTTCTTCAGCAGAAAAAAGAGAGATGGAGAAAGTTTTGATGAATTTTTCTGTACGTTGAGAAAATTGGCGGGAGACTGTGGGTTTGCAGACCTAGAAGAAAGCTTAATAAGAGACCAAATCATATTAGGCTTAAATGATGCCAAATTAACAGAAAGATTGCTTAAGGAACCGACCTTAACATTGGATAGCTGCATGAAAATATGTAAAGTGGCTGAGAGTGCTGCAAAACAGGTTCAAGTCATGACAGAAAAGACAGTTGAAGCTGTTACAAGAAAACAAGAATCTCGAAGCAGAATGCCTAATCAGAATAAAACCAGTTTTAATAATAAACAACATCTAGGTAAGAGTGCAGAAGGATCAGTAAGGTTGAAGAATAATAATTGTGAAAGATGCGGAGGAGTGCATTCTCATCGATCCTGCCCAGCCTTTGGAAGGAGATGTGCTAAGTGTAATCGATATGGACATTACATGCAGATGTGCAGAACAGTTGGTGCTGTGTATGTCAGCGATGATGATAGTGATGACTCATTAGTAGTGGGGTCAGTAACTGTGGGCCAGGTTGATACAGAGGACTGGATCGTTGAGGCAAAAGTGAGAGGACAGAAGATGAAGTTCAAAGTGGATACAGGATCGCAGGTTAATATTTTGACTAGTGCTATAGTGAAAAAACTAGACTTAAAAATGACAGAAACTTGTACAAAATTAAAAAACTTTGATGGCTCAACTATAGAAACAGTAGGTATGACTAAAACTATAGTGAAATTCAATAAAAAAAAATATGTACTTGACTTTTATGTGGTAAAATTTAAAACTACTAATGTGCTGAGCTATAAAGCTGCTGTGCAGTTGGGTTTAATAAACAAAGTTGAAAATATTTCAAAGGAATATGTAGTTCAGGACATTGGTGAATACAAAGATTTGTTTCATGGCTTAGGAAAATTGAACTATGTATACAAAATTAAATTAACAGACAATTGTGCACCTATAGTGGAGCCACCAAGGAAAATTCCTTTTAAATTAGTAGATAAAGTAAAAAATGAGCTTGATCGATTGGAGCAACTTGATGTAATAAAGAAAGTGCAAGAACCAACTGAGTGGGTTAACTCTATGGTGATTGTAAAAAAAAGTCAAGATAAAATTAGATTGTGTTTAGATCCACAAAATATAAACAAATGTATCATTAGAGAACGTCATAAAATACCTACCTTTGAGGAACTTACTTCAGCCATGCCTGATGCCAAATATTACTCAGTGTTAGATGCAAACAAAGGATTTTATCAGATTTTGTTAGCAGAAGAAAGTCAACTGCTAACAACGTTCAATGCAGGTCAATTTGGAAGATATTGTTTTAAGCGGTTACCATTTGGCCTGAATTCTGCCCCTGAGGTATTTACTAAGTGTTATTCAGAAATTTTCAATGATATACAGGGTGTAGTAACTTATGTTGATGAAATATTAGTATGGGGAGATACGAAAAAAACACATGATGAAAGATTACTCCAAGTTTTAGAAAAGGCTCGGCAGGCTGGGGTCAAGTTTAATAAAGAGAAATGTGTCATAGGTGTAAAAGAGGTTAAATATGTGGGTCATATCCTATCTAGTGAGGGCCTTAAGCCAGACCCAGAAAAAGTGCGAGCTATTGTGGACATGAAAGAGCCAACAACAAAAAAGGAATTACAAACTGTCTTGGGTATTATAACATACATTTCTAAATTTATACCAAATACATCAGAATTGACAGAATCACTAAGACAATTGCTAAAAAAAAACGTAGAGTACATTTGGGGTGACAAACAAAAAGAAGATTTTAAAAAAATAAAACAATTTCTCACTAGTGCAACAGTGCTCAGATACTTTGATGTCAACAAACCAGTGACTCTTTCAGTCGACAGTAGTTCCACAGGGTTGGGAGCGGTACTCCTACAGGATAATTTACCAGTTGCTTATGGGTCAAAGACCTTGACAGAGTGCCAAAAGTCATGGGCACAAATTGAAAAAGAAATGTTGGCAATAGTATATGGATGTGAAAAGTTTCATCAATATATTTATGATAAACATGTAATAGTTGAATCTGATCATAGGCCTTTAGAATACATATTTAAAAAAACAATCAATGAAACTCCACTAAGACTACAAAGGCTTAGATTGAGAATTCAAGGGTATGACCTGGAAATAAGATATAAACCAGGAAAAGAATTATTTGTAGCTGACGCCTTGTCTAGGAATAGCTTACCAGACAAAATATGTAATAAAGATTTGGATCAGCATGTAGAATTGCATGTTTGCTTGATAACGGAAGGATTAAAATTCACAGAACAAAAATTAGAAGATTTTAAAAAAAAAACTGCAAATGATGAAGAATGTCAAAAAATTATAAAAAATATTGAAATGGGATGGCCAGATAAAGTAAAATTACCAACAGATTTAAAATATTATCATTCTATAAAAGAGGATTTGTATTATGCAAATGGAAAGATATTTATATGGCCTTGA

Protein

MDSLKPPPPLCLMGDLKQNFQKWTQQYDIYMIASGTEGDEKIKDKQKKAIYLHCLGAEALTIYNGFKNKEKLSYVEVKQKFNEYCSPPGNETFSRHVFFSRKKRDGESFDEFFCTLRKLAGDCGFADLEESLIRDQIILGLNDAKLTERLLKEPTLTLDSCMKICKVAESAAKQVQVMTEKTVEAVTRKQESRSRMPNQNKTSFNNKQHLGKSAEGSVRLKNNNCERCGGVHSHRSCPAFGRRCAKCNRYGHYMQMCRTVGAVYVSDDDSDDSLVVGSVTVGQVDTEDWIVEAKVRGQKMKFKVDTGSQVNILTSAIVKKLDLKMTETCTKLKNFDGSTIETVGMTKTIVKFNKKKYVLDFYVVKFKTTNVLSYKAAVQLGLINKVENISKEYVVQDIGEYKDLFHGLGKLNYVYKIKLTDNCAPIVEPPRKIPFKLVDKVKNELDRLEQLDVIKKVQEPTEWVNSMVIVKKSQDKIRLCLDPQNINKCIIRERHKIPTFEELTSAMPDAKYYSVLDANKGFYQILLAEESQLLTTFNAGQFGRYCFKRLPFGLNSAPEVFTKCYSEIFNDIQGVVTYVDEILVWGDTKKTHDERLLQVLEKARQAGVKFNKEKCVIGVKEVKYVGHILSSEGLKPDPEKVRAIVDMKEPTTKKELQTVLGIITYISKFIPNTSELTESLRQLLKKNVEYIWGDKQKEDFKKIKQFLTSATVLRYFDVNKPVTLSVDSSSTGLGAVLLQDNLPVAYGSKTLTECQKSWAQIEKEMLAIVYGCEKFHQYIYDKHVIVESDHRPLEYIFKKTINETPLRLQRLRLRIQGYDLEIRYKPGKELFVADALSRNSLPDKICNKDLDQHVELHVCLITEGLKFTEQKLEDFKKKTANDEECQKIIKNIEMGWPDKVKLPTDLKYYHSIKEDLYYANGKIFIWP

Uniprot

A0A3P8Q6C6   A0A3B3HLX7   A0A3P8S414   A0A2G8LMB1   A0A2G8KHQ8   A0A3P9HT22   + More
X1WTY2   A0A2G8KFU3   A0A2S2N8I3   A0A3B3C9X5   A0A1A8UGA0   A0A3B1JKR1   A0A3P8RKT7   A0A3P9AYU2   A0A3P8RHF8   A0A1Y1MZH6   A0A087SXG5   J9L288   A0A3P9HXP1   A0A146TAZ6   A0A0A9XW98   A0A023EY30   A0A1Y1L7V1   A0A0A9WHB1   A0A3B3I1S4   A0A3Q2XZ76   A0A3P8QAD1   A0A3P8P6K4   A0A3B3H7E4   A0A2G8JDW4   A0A0A9Z4Y4   A0A146LC45   A0A1S3DNR0   A0A1S3DH71   A0A1Y1MCJ7   A0A1S3DM37   I3KYE2   A0A1Y1M671   A0A3P9LFC2   A0A3P9LZF9   A0A1S3JEC7   A0A146SN99   A0A147BKH7   A0A3P9K9H2   A0A1A8DQM9   A0A3Q0JJN5   A0A3Q0JK14   A0A1Y1JV53   A0A1Y1LVD1   A0A1A8S1T9   J9LYD2   A0A2S2NI46   A0A1A8N8J3   A0A1A8L2U7   A0A147BJX4   A0A3Q0JFZ1   A0A069DZS8   A0A0P4XRP4   A0A0P5A948   A0A0P5V4F7   A0A069DY08   A0A0P5XDK7   A0A0P6BAV5   A0A0P5VCW1   A0A1S3DJN8   A0A3Q0JJE3   A0A0P5DHJ0   A0A267GLM4   A0A1Y1NHV7   A0A1S3H1U1   A0A0P5VRF2   A0A075EIL5   J9JQ26   A0A131Y4S4   A0A3Q0J4U3   A0A2S2PCF5   A0A087UXZ8   J9LXR9   A0A0A9YHV4   A0A0P4VZQ4   A0A0A9W3X9   A0A3P9JKX9   A0A146TSV5   A0A147BIE4   A0A023EXW7   A0A3B3HZT8   A0A146YPR2   A0A023EWW4   A0A147BN28   A0A1Y1NDC5   A0A3B3IB43   A0A3P9HMN7   A0A1S3DMQ1   A0A3B3I9J4   A0A3B3HBT8   A0A3P8PXK5   A0A1A8CXN4  

Pubmed

17554307    29023486    29451363    25329095    25186727    28004739    + More
25401762    25474469    26823975    29652888    26334808    25201971    27129103   

EMBL

MRZV01000033    PIK61397.1    MRZV01000576    PIK47528.1    ABLF02013930    ABLF02013934    + More
MRZV01000618    PIK46835.1    GGMR01000868    MBY13487.1    HADY01023773    HAEJ01006887    SBS47344.1    GEZM01016880    JAV91071.1    KK112400    KFM57554.1    ABLF02022355    ABLF02022359    ABLF02022361    ABLF02022365    ABLF02041467    GCES01096219    JAQ90103.1    GBHO01022049    GBHO01022048    JAG21555.1    JAG21556.1    GBBI01004745    JAC13967.1    GEZM01066276    JAV68015.1    GBHO01036465    JAG07139.1    MRZV01002352    PIK33923.1    GBHO01004090    JAG39514.1    GDHC01013957    JAQ04672.1    GEZM01035137    JAV83383.1    AERX01070080    GEZM01041944    JAV80090.1    GCES01104253    JAQ82069.1    GEGO01004116    JAR91288.1    HADZ01002490    HAEA01007842    SBQ36322.1    GEZM01102055    GEZM01102054    GEZM01102053    GEZM01102051    JAV52011.1    GEZM01051395    JAV74977.1    HAEH01020882    SBS11479.1    ABLF02041541    GGMR01004179    MBY16798.1    HAEH01000697    SBR65395.1    HAEF01001580    SBR38962.1    GEGO01004317    JAR91087.1    GBGD01000115    JAC88774.1    GDIP01239061    JAI84340.1    GDIP01203362    JAJ20040.1    GDIP01199810    GDIP01181260    GDIP01124130    GDIP01104931    GDIP01053137    GDIP01051184    JAL98783.1    GBGD01000119    JAC88770.1    GDIP01073678    JAM30037.1    GDIP01019161    JAM84554.1    GDIP01102077    JAM01638.1    GDIP01156216    JAJ67186.1    NIVC01000291    PAA86189.1    GEZM01001973    JAV97431.1    GDIP01096578    JAM07137.1    KF319019    AIE48224.1    ABLF02019772    GEFM01002416    JAP73380.1    GGMR01014455    MBY27074.1    KK122208    KFM82237.1    ABLF02066184    ABLF02066704    GBHO01011825    JAG31779.1    GDKW01000526    JAI56069.1    GBHO01042421    GBHO01026477    JAG01183.1    JAG17127.1    GCES01115952    GCES01090369    JAQ95953.1    GEGO01004841    JAR90563.1    GBBI01004851    JAC13861.1    GCES01030230    JAR56093.1    GBBI01004852    JAC13860.1    GEGO01003204    JAR92200.1    GEZM01011167    JAV93617.1    HADZ01020631    HADZ01021503    HAEA01008283    HAEA01008803    SBP84572.1    SBP85444.1   

Proteomes

UP000265100    UP000001038    UP000265080    UP000230750    UP000265200    UP000007819    + More
UP000261560    UP000018467    UP000265160    UP000054359    UP000264820    UP000079169    UP000005207    UP000265180    UP000085678    UP000215902   

Pfam

PF17921   Integrase_H2C2        + More
PF17919   RT_RNaseH_2
PF00078   RVT_1
PF00665   rve
PF03732   Retrotrans_gag
PF09668   Asp_protease

Interpro

IPR001584   Integrase_cat-core        + More
IPR041577   RT_RNaseH_2       
IPR001878   Znf_CCHC       
IPR012337   RNaseH-like_sf       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001995   Peptidase_A2_cat       
IPR005162   Retrotrans_gag_dom       
IPR001969   Aspartic_peptidase_AS       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR036875   Znf_CCHC_sf       
IPR000679   Znf_GATA       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       

Gene 3D

2.40.70.10     3.30.420.10    

ProteinModelPortal

A0A3P8Q6C6   A0A3B3HLX7   A0A3P8S414   A0A2G8LMB1   A0A2G8KHQ8   A0A3P9HT22   + More
X1WTY2   A0A2G8KFU3   A0A2S2N8I3   A0A3B3C9X5   A0A1A8UGA0   A0A3B1JKR1   A0A3P8RKT7   A0A3P9AYU2   A0A3P8RHF8   A0A1Y1MZH6   A0A087SXG5   J9L288   A0A3P9HXP1   A0A146TAZ6   A0A0A9XW98   A0A023EY30   A0A1Y1L7V1   A0A0A9WHB1   A0A3B3I1S4   A0A3Q2XZ76   A0A3P8QAD1   A0A3P8P6K4   A0A3B3H7E4   A0A2G8JDW4   A0A0A9Z4Y4   A0A146LC45   A0A1S3DNR0   A0A1S3DH71   A0A1Y1MCJ7   A0A1S3DM37   I3KYE2   A0A1Y1M671   A0A3P9LFC2   A0A3P9LZF9   A0A1S3JEC7   A0A146SN99   A0A147BKH7   A0A3P9K9H2   A0A1A8DQM9   A0A3Q0JJN5   A0A3Q0JK14   A0A1Y1JV53   A0A1Y1LVD1   A0A1A8S1T9   J9LYD2   A0A2S2NI46   A0A1A8N8J3   A0A1A8L2U7   A0A147BJX4   A0A3Q0JFZ1   A0A069DZS8   A0A0P4XRP4   A0A0P5A948   A0A0P5V4F7   A0A069DY08   A0A0P5XDK7   A0A0P6BAV5   A0A0P5VCW1   A0A1S3DJN8   A0A3Q0JJE3   A0A0P5DHJ0   A0A267GLM4   A0A1Y1NHV7   A0A1S3H1U1   A0A0P5VRF2   A0A075EIL5   J9JQ26   A0A131Y4S4   A0A3Q0J4U3   A0A2S2PCF5   A0A087UXZ8   J9LXR9   A0A0A9YHV4   A0A0P4VZQ4   A0A0A9W3X9   A0A3P9JKX9   A0A146TSV5   A0A147BIE4   A0A023EXW7   A0A3B3HZT8   A0A146YPR2   A0A023EWW4   A0A147BN28   A0A1Y1NDC5   A0A3B3IB43   A0A3P9HMN7   A0A1S3DMQ1   A0A3B3I9J4   A0A3B3HBT8   A0A3P8PXK5   A0A1A8CXN4  

PDB

4OL8     E-value=7.26528e-47,     Score=476

KEGG

105842116    no KO assigned | (RefSeq) uncharacterized LOC105842116

GO

GO:0015074   GO:0003676   GO:0008270   GO:0004190   GO:0006355   GO:0043565  

Length:

927

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01112

Exp number, first 60 AAs:

0.00727

Total prob of N-in:

0.00061

outside

1  -  927

 

 

Pi

63.077844

Theta

164.889099

Tajima's D

-1.474951

CLR

0.203889

CSRT

0.063896805159742

Interpretation

Uncertain