SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08419
Annotation
PREDICTED:_uncharacterized_protein_LOC101738890_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.84
 

Sequence

CDS
ATGCTACGTCAAAAAATCATTCAACCCTCTATCTCACCATGGTCAGCACCTATATGGGTAGTACCAAAAAAACAAGACTCCTCCGGTAAACCTAAGTGGCGTATTGTTATCGACTATAGGAAGTTAAATCAAGTAACAATTGGTGATGCCTATCCTATTCCGAACATCACGGATATCCTGGACCAGCTAGGCCACAGTAAATACTTTACCACTCTTGACCTCGCGTCTTCGTTTCATCAAGTCAAGGTGAAAGATACCGAAAAAACAGCATTTAGTGTGCCCTCGGGCCATTACGAGTTCACGCGTATGCCTTTTGGTCTTCGAAATGCTCCTTCCACATTTCAAAGACTCATGAATATAGTACTAAGCGGCCTTCAAGGCACTCATTGCTATACATATTTAGATGATATAGTCGCTTTCAACCACGATCTCTTGTCTCATTGTCAAAACCTCAGAAACATATTTCATAAGCTCCGTGAACACAACCTAAAATTACAACCGGACAAATGTGAGTTCTTTCGTCGAGAAGCACAGTATCTTGGACATATTATTTCAGATAAAGGAGTAATGCCTGACCCCAAGAAGGTTCTCTGTGTTACTAACTTCCCAGTTCCGAAGTCTCCACGTGATATAAAATCATTTCTAGGTTTAGTTGGTTATTATCGTCGCTTCATTGAAAATTTCTCCCATATTACTAAAGCTTTAACTAGCCTTCTAAAAAAGGACGCTACGTTTCAATGGGGTTGTGAACAACAAAAAGCCTTCGACGAACTGAAAAACAAAATAACCTCGGCTCCTATCCTTCAGTACCCTGATTTTACTAAACCCTTCGTACTAACAACAGACGCATCCAATTACGCTGTTTCTGCTATTCTTTCTCAAGGCGAAGTAGGTCAAGATCTCCCAATAGCCTTCGCATCTCGAACCCTGAACAAATCAGAAGGAAATTATTCTACAACCGAAAAAGAATGTTTAGCTATCATTTTCGGCACAAAAGTTTTCAGACCTTATCTGTATGGACACAAGTTTAAAATCGTGACCGATCATAAACCTTTGCAGTGGCTATTTAACTGCAAAGACCCCGGTTCTAAGTTAGTTAGGTGGAGGTTAAAATTAGAAGAATTCGACTACGAGATTGAATACAAAAAGGGGAAGTTAAATTGTAACGCAGATTCCTTATCTCGCAACCTCGTTCATACTCTCGATGAACCAACCGTTTTACAACCACCCCCATACCTTGATGAACAGTCTCGAGTAGATGAGCCCCTTACGTTCGATGACTTGTCTCCGTTACCACCCCCCATAGACTTCAACGCCCCAGGTTCCGTCCCTTCAGAAACCCCTCTTGGACAAGAAATGCCTAGCCACCCTACTCAACCTCCTACAAAAGTCCCTTCTCCATCACTGCCCTCGCAACCGTCACCGTCAACTCCTGAAACCTATGAACAATATCTAAAAGTGTCCCGACAATCGAAAGATCCGTTTAACACAAATATTCAGGAATTTAACGACTCTCTACTTAAAGCTAAATGTAAGCTGATAGCCTACCCTACCTCAATTGACCTTGATGAGTCTGTACCATATTGTTCAGAAATCATAGAAATGTCCACAACTATGCCTGACATACGTGAAGTGGAGAGAGAACTGTACTCATTTTATTCTACCGGTAACGCCAGTCATTTATTTACACATTTGTTTGTCCGTGTTCATTTTTACGATGAGTTTACGTATAAAGATATTTTTAATGTTTTACGTTGTTACCGTGACATGATAACTACATGGTATAGCGAGGAAAAAGAATGTGCTATATCAGATTTCTCAGACCCTTACACGAAATTGTCATTTACAAAAATTTACAATATCGTTGCGTTTCTATTTCATGACACTCAAATCAAAGTAAATATTTACCATAACAATATCCAATATCCTACGCCTTCCGAAATCAAAAAAATATTAAGAGATCACCATGATTCCACGACTGCAGGTCACCCCGGAGTCGCTCGTATGTTAGGACGAATAAAAGAACTATATTGGTGGAAAAATATGCGACAAGACATAGAAAACTATGTCAAAAATTGCAAATCGTGCCAAATAAACAAACCGCTGCGCCAAGTTAATCGCTCCCCAATGATAATCACGTCTACCGCCACTAGAGCTAATGAAAAGTTATTCCTAGATTTAGTGGGGCCATTACCCGAAACACACCATAACAAATTCAAATTCATTCTTACGTTACAAGACGATCTCACTAAATATTCTCAAGCATATCCCATGGTCACATGCTCCGCCGAAGAAACAGCTCGTTCATTAGTAAAGTATATCTCCCATATCGGTATCCCTAAGATCATTATTACAGATCAAGGTGCTAACTTCTCTTCCGAAGTAATGAAGCAGTTAGAGCGTTTATTCGGAATAAAACACATTTTTGCTTCTCCATATCACCCGCAGACTTGTGGCGCCCTAGAAAGAAGTCATTCGACTCTGAAAGAATATCTTAGGTCGTATATAGTTGAAAACCAACATACATGGGACTTATATCTTAGAACAGCAATGCTAGCGTACAATTCCAATATCCACTCTACCACAGGCTTTTCACCATTAGAACTGTTATTCGGGTTTAAACCCTACATCCCTAAAAGTATAGACTCTCTCGACCTTAATACATACAGCGATTATATAAGAGCACTTAATCACCGGTTATATTACAGCCGTCAAAAAGCTTTACAAAATATAGAGTCGTCAAAAGAAAGATCAAAAAAATACTACGACTCTCACTCGAAACCGATTACCTATAATATTGGTGACATGGTCTACGTCCGTTGCCATCATAAGCAAAACAAAGCCTTATCTCCTGTATGGAAGGGTCCATACAAAATCATAAAAATAAACGGCAACCACACGGTCACCTTATTAATGAACCGTAAACACGTGCGTCACCATTATGATGAAATAAAATTAGCAAATGACGACGCACTATAG
Protein
MLRQKIIQPSISPWSAPIWVVPKKQDSSGKPKWRIVIDYRKLNQVTIGDAYPIPNITDILDQLGHSKYFTTLDLASSFHQVKVKDTEKTAFSVPSGHYEFTRMPFGLRNAPSTFQRLMNIVLSGLQGTHCYTYLDDIVAFNHDLLSHCQNLRNIFHKLREHNLKLQPDKCEFFRREAQYLGHIISDKGVMPDPKKVLCVTNFPVPKSPRDIKSFLGLVGYYRRFIENFSHITKALTSLLKKDATFQWGCEQQKAFDELKNKITSAPILQYPDFTKPFVLTTDASNYAVSAILSQGEVGQDLPIAFASRTLNKSEGNYSTTEKECLAIIFGTKVFRPYLYGHKFKIVTDHKPLQWLFNCKDPGSKLVRWRLKLEEFDYEIEYKKGKLNCNADSLSRNLVHTLDEPTVLQPPPYLDEQSRVDEPLTFDDLSPLPPPIDFNAPGSVPSETPLGQEMPSHPTQPPTKVPSPSLPSQPSPSTPETYEQYLKVSRQSKDPFNTNIQEFNDSLLKAKCKLIAYPTSIDLDESVPYCSEIIEMSTTMPDIREVERELYSFYSTGNASHLFTHLFVRVHFYDEFTYKDIFNVLRCYRDMITTWYSEEKECAISDFSDPYTKLSFTKIYNIVAFLFHDTQIKVNIYHNNIQYPTPSEIKKILRDHHDSTTAGHPGVARMLGRIKELYWWKNMRQDIENYVKNCKSCQINKPLRQVNRSPMIITSTATRANEKLFLDLVGPLPETHHNKFKFILTLQDDLTKYSQAYPMVTCSAEETARSLVKYISHIGIPKIIITDQGANFSSEVMKQLERLFGIKHIFASPYHPQTCGALERSHSTLKEYLRSYIVENQHTWDLYLRTAMLAYNSNIHSTTGFSPLELLFGFKPYIPKSIDSLDLNTYSDYIRALNHRLYYSRQKALQNIESSKERSKKYYDSHSKPITYNIGDMVYVRCHHKQNKALSPVWKGPYKIIKINGNHTVTLLMNRKHVRHHYDEIKLANDDAL

Summary

Pfam
PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF12259   Baculo_F
Interpro
IPR021109   Peptidase_aspartic_dom_sf        + More
IPR000477   RT_dom       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR012337   RNaseH-like_sf       
IPR002589   Macro_dom       
IPR022048   Envelope_fusion-like       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF53098   SSF53098        + More
SSF57756   SSF57756       
Gene 3D
PDB
4OL8     E-value=1.5325e-68,     Score=663

Ontologies

Topology

Length:
992
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00706999999999999
Exp number, first 60 AAs:
0.00035
Total prob of N-in:
0.00027
outside
1  -  992
 
 

Population Genetic Test Statistics

Pi
26.884037
Theta
59.122136
Tajima's D
-1.718864
CLR
109.76402
CSRT
0.0354982250887456
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号