SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08407
Annotation
PREDICTED:_AT-rich_interactive_domain-containing_protein_2-like_[Bombyx_mori]
Location
Bomo_Chr14(+):8086501-8120557      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.647
 

Sequence

CDS
ATGTGTGTCACTCGGGGTCTGCCGCGGACTGTATTCGGCGGGACGGTCGGCCCCAACCCGGTGACGGCGGCCTCGGGCGAGTCGCAACAAGCCTACATCGGGATCAGGGCTAGGAACCCGCAGAACAGGACCAATACCACTGCAGGACCGTCGTCGCCCATACTCAAGGCTCAGTTGACGAACAAGGCCGCTGTGGAAGTGAAGCCGGCTGTCACGCAGGCTGCGCAGGCGCTGGAATCGAATCCCTCCAACACGACCCTCATCAAGCACTTGCTCGCTCATAAAGTAAGCCCCGCTACATCGCAACCGCAAGTGGCGCAAAGACAGCAGAATCAGCAGCGTGTGCCGACAACGTCAACCGTGGTCGTACAATCCAACCAGGCCATGGACGTAGACCCAGAATCATTGATCAAGTGCACCACAATAATAACGCCGGGTGGAGTTGCCAACACGACGCCCTCGACGCAAAGCGAGAAGGTCATCATCAGTACTCAAGAGGACATATTGGTGCCCAAAGAAGAACCGGTTCAAATTCAAATCGACGATCAAACGCAGTTTACTATTAAGACGACACAAAACAAAATGTTAGCAGATCTACTCGAGAAGAAGTCGAATCCTCCCGTACAAGTCGTACAGATGGCGCCCCAGCTCAACGCTCCGACCATCCAAATAACAGAGACCGGTCAGATAGTTCAAGTGAAGTCCGATTCGACGCCGCTGATACAGATATCGGACTCGGCCCTCGTCGGCGGTCAATATTTCCAGATAAAAAACGACCACGGCCAGTTGATACACATAAAAAACGAACAAGGTCAGATCGTTCAACTGAAGAGTGATCAGATACAGCCTCTATTGCAGTTCAAGAGCGAACAGGGACAGATCGTTCAGGTGAAGAGCGAGTCCGTGACGCAGCCGGGGGTGGTTCAGTTGAAGGAGAAGGACGCGCTGGATTTGGTGGTGACGGATCACTCGTACACCGAGCCGCCGTCGAAGAAGATCAAAGTCGAGGAGACAAGCGTCCGACAAGAATCCGTATCGAAAACGGCGGCAAATTTGTATGCGGCACTCGCGGCATCCGCTTTAGAAGACGAAGACGATTTGCTACCACCGAAACAAGAGGCAATGGATGTGATCCAACCGCCGGTGTTGGTCGCGGGCACGGCCGATAACCCGTCCGTCATAATTCAAGAACCAATACTGCAGGTGCAACAACCTACAATGCAAGTTCAGCAGTCTGCTATACAGGTTCAAGGTCAAACTCTGCAGGTCCAGCAGCCGGCATTACAAATGCAACAGCCGATGTTGCAAGTGCAACCGATGGACGTCCAAAACATCATAGCTTCGCAATCCGGACAGTTGATTCTGCAAGAAAAAACGATAGCAACACAGCCGGCGCAGTTTATGCAGCAGCCAATGCAGATCATCGCTACCCCCAGCACTTCTCAAGGTCTGAGTTACATCACCCAGAATCTGCCGAGCAATATGATGCAGAAGACTATAATAATCGTTCAGGGTCCAGCCGGGGGTGGACCGCTGACGCTCACGGTGAACAACCCTGGCGGCTTGGACGAAGGCACGCTAAACAGTCTAATAGCGCAAGCGACCGAAGCATTGACTCAACAACAAATAATACAGAATACTGGAGTGATACAGTCGACCCAGAGGGTTATTGTCAGTCAGCCAACACTAGTGAGCACTTCACAGCCGATAACCGTTGTGAAGACTGCCATTGCTCAGAACGCCCCTCAAATAACTCCAAGCCAGCAACCGATAATAACGACCCAACCGCAGCCCCACAAGGCTCAAATCGTTAGTCAACCTCAAGCGCAACAGATAGTTGTGACCCAGAAGCAACCTCCCACTCTTATCACCACGTCGACCAGCAACCAAATGATGCAGGGCACCCAGCAACTGATTCAGGGGAACCAGCAATTGCTCCAAGGGGGGCAACAGCTTATATCGGTGTCGAACAACCAGCCCGTGCTGATGAGTGCACCGCTGAAGGCGAACGTTCACAGAGTCGTGCAACCTCAGAGGAGTCAAGTCGTGAACCAACCGATGGCGACTCCGGCATCCGTTGTGCAGACTGACACCAAGAATACAGTCATTCAGAGCGGCGCGAAAGTCCAGGCACAAGCAATGAGGCAGGTGATCACCCGGCAACCGGTGATGGTTGGCAACACGAAGATCGGCGATAAGGAGCTAGTTGTGACGCAGCCGGTAACTCCCGAGAAGAGTGTAACGCCGAAACCGCCCAAGTCGACGGCGACTCCGCCTCCCCCGCCGCCGCCGCCGCCGTGTCCGCGCACGCCTCCCTCCACGCACGACCCCGACACACCTTGGATCTGCCACTGGAGTGGATGCGGCAAAACGTTCGCGAACGCATCGGAAGTGTTCGTGCACGCGGCGCGGCGGCACTGCCCGGGTGGCGCGGGGGGCGAAGCGCCGTGTCTGTGGCTGGACTGCGACCGCGTGCCGAGGAAGACCTTCGCGCTACTCAACCATCTCACAGACAAGCACTGTACCGTGGCGGCGTTAAAGGCGATTTACAACTCGCGTCGTCACACCGCCTCGGACGCGGACGGCAACAAGCCGGTGTCGGTGGGCTACCCTCCCAACGCAGCGCTGGCCGCTCTCAACAAACACGCAGCCGACATGTTCAACCCGAGGGAGCTAATGGTAAGTGACGAAAATGAAGGTCCCGTAACGAAGAGCATTAGATTGACGGCCGCCCTCATCCTGAGGAATATCGTCATTTATTCGAATACAGGAAGACGGCAATTGCGTTCGTACGAATCGCATTTGTCCGCGATCGCGCTCAGCACGGTCGAAGCCTCGCGCACGATCGCCCAAGTATTGTACGACATGAACAACATATGA
Protein
MCVTRGLPRTVFGGTVGPNPVTAASGESQQAYIGIRARNPQNRTNTTAGPSSPILKAQLTNKAAVEVKPAVTQAAQALESNPSNTTLIKHLLAHKVSPATSQPQVAQRQQNQQRVPTTSTVVVQSNQAMDVDPESLIKCTTIITPGGVANTTPSTQSEKVIISTQEDILVPKEEPVQIQIDDQTQFTIKTTQNKMLADLLEKKSNPPVQVVQMAPQLNAPTIQITETGQIVQVKSDSTPLIQISDSALVGGQYFQIKNDHGQLIHIKNEQGQIVQLKSDQIQPLLQFKSEQGQIVQVKSESVTQPGVVQLKEKDALDLVVTDHSYTEPPSKKIKVEETSVRQESVSKTAANLYAALAASALEDEDDLLPPKQEAMDVIQPPVLVAGTADNPSVIIQEPILQVQQPTMQVQQSAIQVQGQTLQVQQPALQMQQPMLQVQPMDVQNIIASQSGQLILQEKTIATQPAQFMQQPMQIIATPSTSQGLSYITQNLPSNMMQKTIIIVQGPAGGGPLTLTVNNPGGLDEGTLNSLIAQATEALTQQQIIQNTGVIQSTQRVIVSQPTLVSTSQPITVVKTAIAQNAPQITPSQQPIITTQPQPHKAQIVSQPQAQQIVVTQKQPPTLITTSTSNQMMQGTQQLIQGNQQLLQGGQQLISVSNNQPVLMSAPLKANVHRVVQPQRSQVVNQPMATPASVVQTDTKNTVIQSGAKVQAQAMRQVITRQPVMVGNTKIGDKELVVTQPVTPEKSVTPKPPKSTATPPPPPPPPPCPRTPPSTHDPDTPWICHWSGCGKTFANASEVFVHAARRHCPGGAGGEAPCLWLDCDRVPRKTFALLNHLTDKHCTVAALKAIYNSRRHTASDADGNKPVSVGYPPNAALAALNKHAADMFNPRELMVSDENEGPVTKSIRLTAALILRNIVIYSNTGRRQLRSYESHLSAIALSTVEASRTIAQVLYDMNNI

Summary

Uniprot
A0A3S2NXF2   H9JIE7   A0A2A4JSN8   A0A0N1PES4   A0A2H1WWD7   A0A0N1IC16   + More
Pubmed
19121390    26354079   
EMBL
RSAL01000033    RVE51462.1    BABH01022459    BABH01022460    BABH01022461    BABH01022462    + More
BABH01022463    BABH01022464    NWSH01000750    PCG74412.1    KQ459256    KPJ02085.1    ODYU01011523    SOQ57302.1    KQ459986    KPJ18873.1   
Proteomes
UP000283053    UP000005204    UP000218220    UP000053268    UP000053240   
PRIDE
H9JIE7   
Pfam
PF01388   ARID        + More
PF02257   RFX_DNA_binding
Interpro
IPR013087   Znf_C2H2_type        + More
IPR036431   ARID_dom_sf       
IPR016024   ARM-type_fold       
IPR001606   ARID_dom       
IPR003150   DNA-bd_RFX       
SUPFAM
SSF48371   SSF48371        + More
SSF46774   SSF46774       
Gene 3D
1.10.150.60    
ProteinModelPortal
A0A3S2NXF2   H9JIE7   A0A2A4JSN8   A0A0N1PES4   A0A2H1WWD7   A0A0N1IC16   + More

Ontologies

KEGG
101738029    K11765 AT-rich interactive domain-containing protein 2 | (RefSeq) AT-rich interactive domain-contain
GO
GO:0003677   GO:0006355   GO:0005634   GO:0003676   GO:0046872   GO:0016072   GO:0006457   GO:0009408   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Topology

Subcellular location
Nucleus  
Length:
959
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01576
Exp number, first 60 AAs:
0.00458
Total prob of N-in:
0.00025
outside
1  -  959
 
 

Population Genetic Test Statistics

Pi
253.904571
Theta
175.462284
Tajima's D
1.914952
CLR
0.168555
CSRT
0.865006749662517
Interpretation
Uncertain
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