Gene

KWMTBOMO08406  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009297

Annotation

PREDICTED:_AT-rich_interactive_domain-containing_protein_2-like_[Bombyx_mori]

Location

Bomo_Chr14(+):8073521-8085415      View in EpiBrowser

Transcription factor

ARID

Location in the cell

Nuclear   Reliability : 2.009

CDS

ATGTCCAAATTTCAAATAAATACCAAATCCAAGACTTATTTGAAGGACAAGGAGGCCTTCCTGAAGGATTTAAGACAGTTCAATGAAAGTAAAAACATTGTGACAAAACCGGCATACGTGAATGGTATTGAGATTGATTTGTATCACTTCTACACATTGGTCCAACAAAGAGGAGGTATTGGGAAGGTAAATCAAAATGATACATGGGAGTCTTTCCTGAGACCTTTGCGATTGCCTCATCCATGTATCAATGGATCAACACTACTGCGAAGGATTTATTCGTCTCATTTGGAAAAATATGAACGAGCGAAAGGACCACCAGGGCGTGATGATGATAACGACCTGGACGACGACCCCAGGCGAGGGAGAGGCAGTGGTATGCCCAGGATTACTACTTTCGGAGGCGGTACTTATGTCTCAGCATCAGGAGAGGCTCTGCGTCCGGCGCCGCGCGTGGCCGCTCCGTACGAGCGCTTGGCCCTCTCGCTGTTGTCTCCGATGCCGAACGAACAAGACTTCGCCGTCAACGTGTGCACGGTGCTGGCCGCGGACCATTCGAACCGCCTACCGCTGGGCACCACCCCGCACATACTAGACTTCCTACTGGCTCATGCCGGTGTTTACAATCATTCAAGTCTCCGTGACACGATTGGACGGTCGTACTACGAAGCCCGAGGCCGAGCCCCGGACCAGTTCTGGAGCATGCGGGCCGGGGGCGGAGGCGCCAGGGAGCTGGCCGACGAGACCAAGTTCATGCAGCCGGGCGTTGAACAACCCGAGCTGATGGTCCAGGCTTTGGCGGCCCAGAACTCGTTGAACGACTGCCTCATGACCGGCGACGATGAGGAGGATGCCGTCGAGAAAATTGTTGAAGAGGCTCTCCAACAAGAGGCTCTAGAAGATTGGGTGGCGGAGCCGTCGGAGGAGAATCAGCTGTTCGCTCCGGAGTTGCCCGGTGGGGCGGCCTGTGTGTACACGCAGCGGGTACTGCAAGTAGCTTCCATTGTCCGCTCCTTGTCCTTCCACGAAGAGAACGTGCAGTATCTTGCCAAGAACACCACGCTGATAAGATTTCTGCTTCTTTGCGCCAACTGTTGGGTCGGCACATTGCGACAGTCTGGGCTGGACACTCTCGGTAATGTGTCCACGGAATTGATAATCAAGGATCCGGCGACTTGTCTGATATCTAGACACGTTCTGTCCACTATACAGTCTGCGTTAGTGTCGCCGGATCGGGCCAGAGTGTTGGCAGCACTTGAACTACTCAATAAGCTTGCACAAAACGAGGCCAACGAGGACGCTTTGCTCAAAGCTTTAGAAACGAAGGTGTACTCGGAGGTGTGCTCGCTGCTGACGCTGCGCGACATCATGGTGCTGGTGATGGCGCTGGAGTGCGTGTACGCGCTGACCGGGCTCGGGGACCGCGTGTGCGAGCACGTGGCGCGCGTGCCCGGCCTCCTGCACACGCTCGTGTCCCTCGTCACCGTCGAGGCCCAAAGCTACGGGCCGCGAGCTTGCATACTGATGCGCGTGGTGGAGACAGTGAGCGGGCCCAGCGCGCTGGCGGCGGTGGCGGAGCGAGACGCGCAGGAGCGACAGCAGACGCAGCAGCCGCAGCCAACCCCGACTACACCGAAACCAGTACAGCAACCAGAGCCAGCGCCGTCCACGACAGTAGCGGCCACCACGACCACGGTGACCACGACTCCAGCACCCTTCTCATCGATACAGCAATCTCACATGCAACAAAGAACTATACAGGTTTGA

Protein

MSKFQINTKSKTYLKDKEAFLKDLRQFNESKNIVTKPAYVNGIEIDLYHFYTLVQQRGGIGKVNQNDTWESFLRPLRLPHPCINGSTLLRRIYSSHLEKYERAKGPPGRDDDNDLDDDPRRGRGSGMPRITTFGGGTYVSASGEALRPAPRVAAPYERLALSLLSPMPNEQDFAVNVCTVLAADHSNRLPLGTTPHILDFLLAHAGVYNHSSLRDTIGRSYYEARGRAPDQFWSMRAGGGGARELADETKFMQPGVEQPELMVQALAAQNSLNDCLMTGDDEEDAVEKIVEEALQQEALEDWVAEPSEENQLFAPELPGGAACVYTQRVLQVASIVRSLSFHEENVQYLAKNTTLIRFLLLCANCWVGTLRQSGLDTLGNVSTELIIKDPATCLISRHVLSTIQSALVSPDRARVLAALELLNKLAQNEANEDALLKALETKVYSEVCSLLTLRDIMVLVMALECVYALTGLGDRVCEHVARVPGLLHTLVSLVTVEAQSYGPRACILMRVVETVSGPSALAAVAERDAQERQQTQQPQPTPTTPKPVQQPEPAPSTTVAATTTTVTTTPAPFSSIQQSHMQQRTIQV

Uniprot

H9JIE7   A0A2A4JSN0   A0A2A4JS20   A0A2A4JSN8   A0A2A4JSH7   A0A0N1PES4   + More
A0A212F6H5   A0A0N1II27   A0A1B6K1E1   A0A1B6LQD1   A0A1B6LK21   A0A1B6C8J2   A0A1B6L5B0   A0A1B6M5K7   A0A1B6DMC9   A0A1B6H376   A0A1B6LD06   A0A1B6MCM7   A0A1B6MNV9   A0A1B6MB17   A0A139WJ12   A0A2R7WUC6   A0A0K8S4A4   A0A0K8S495   A0A0K8S4F2   W4VRS3   A0A0K8S5W9   A0A0T6B0E9   A0A182GDH8   A0A182ISF2   A0A1S4EYK1   A0A139WJ37   A0A139WJB8   A0A139WJB7   Q17LF2   A0A0P6ITX4   A0A154NWF6   A0A182WHX2   A0A182GU46   A0A182JSX0   A0A182R9U1   A0A182P129   A0A2Y9D1J2   A0A182Y323   A0A182FGB7   Q7QIP2   A7URT8   A0A182UII1   A0A1S4GUG0   A0A2M4D0T6   A0A023F105   A0A182L3H6   A0A182I6V3   A0A182VDW0   A0A182WWL7   A0A1J1I5Q8   A0A0A1XMG5   J9JQY6   A0A1A9WJD6   A0A0K2TE49   A0A1I8PC12   A0A1I8PC15   A0A182SSE8   A0A1I8MHK3   A0A1I8MHJ9   T1JB82   A0A151XGZ5  

Pubmed

19121390    26354079    22118469    18362917    19820115    26823975    + More
26483478    17510324    26999592    25244985    12364791    25474469    20966253    25830018    25315136   

EMBL

BABH01022459    BABH01022460    BABH01022461    BABH01022462    BABH01022463    BABH01022464    + More
NWSH01000750    PCG74410.1    PCG74414.1    PCG74412.1    PCG74413.1    KQ459256    KPJ02085.1    AGBW02010014    OWR49341.1    KQ459986    KPJ18871.1    GECU01002455    JAT05252.1    GEBQ01014072    JAT25905.1    GEBQ01015969    JAT24008.1    GEDC01027471    JAS09827.1    GEBQ01021079    JAT18898.1    GEBQ01008786    JAT31191.1    GEDC01010481    JAS26817.1    GECZ01000630    JAS69139.1    GEBQ01018418    JAT21559.1    GEBQ01006307    JAT33670.1    GEBQ01002432    JAT37545.1    GEBQ01006851    JAT33126.1    KQ971338    KYB27906.1    KK855571    PTY23153.1    GBRD01017706    GDHC01012881    JAG48121.1    JAQ05748.1    GBRD01017710    GDHC01001188    JAG48117.1    JAQ17441.1    GBRD01017709    JAG48118.1    GANO01000155    JAB59716.1    GBRD01017707    JAG48120.1    LJIG01016427    KRT80635.1    JXUM01009962    KQ560295    KXJ83205.1    KYB27904.1    KYB27907.1    KYB27905.1    CH477216    EAT47510.1    GDUN01000732    JAN95187.1    KQ434772    KZC03882.1    JXUM01088585    JXUM01088586    JXUM01088587    KQ563710    KXJ73453.1    AAAB01008807    EAA04740.4    EDO64730.1    GGFL01006530    MBW70708.1    GBBI01003754    JAC14958.1    APCN01003701    CVRI01000042    CRK95629.1    GBXI01002232    JAD12060.1    ABLF02035248    ABLF02035256    ABLF02035264    ABLF02035265    ABLF02035266    ABLF02035270    ABLF02043211    HACA01006942    CDW24303.1    JH432010    KQ982156    KYQ59568.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000007266    + More
UP000069940    UP000249989    UP000075880    UP000008820    UP000076502    UP000075920    UP000075881    UP000075900    UP000075885    UP000076408    UP000069272    UP000007062    UP000075902    UP000075882    UP000075840    UP000075903    UP000076407    UP000183832    UP000007819    UP000091820    UP000095300    UP000075901    UP000095301    UP000075809   

PRIDE

H9JIE7   

Pfam

PF01388   ARID        + More
PF02257   RFX_DNA_binding

Interpro

IPR036431   ARID_dom_sf        + More
IPR016024   ARM-type_fold       
IPR001606   ARID_dom       
IPR013087   Znf_C2H2_type       
IPR003150   DNA-bd_RFX       
IPR036388   WH-like_DNA-bd_sf       
IPR036390   WH_DNA-bd_sf       
IPR011989   ARM-like       

SUPFAM

SSF48371   SSF48371        + More
SSF46774   SSF46774       
SSF46785   SSF46785       

Gene 3D

1.10.150.60     1.10.10.10     1.25.10.10    

ProteinModelPortal

H9JIE7   A0A2A4JSN0   A0A2A4JS20   A0A2A4JSN8   A0A2A4JSH7   A0A0N1PES4   + More
A0A212F6H5   A0A0N1II27   A0A1B6K1E1   A0A1B6LQD1   A0A1B6LK21   A0A1B6C8J2   A0A1B6L5B0   A0A1B6M5K7   A0A1B6DMC9   A0A1B6H376   A0A1B6LD06   A0A1B6MCM7   A0A1B6MNV9   A0A1B6MB17   A0A139WJ12   A0A2R7WUC6   A0A0K8S4A4   A0A0K8S495   A0A0K8S4F2   W4VRS3   A0A0K8S5W9   A0A0T6B0E9   A0A182GDH8   A0A182ISF2   A0A1S4EYK1   A0A139WJ37   A0A139WJB8   A0A139WJB7   Q17LF2   A0A0P6ITX4   A0A154NWF6   A0A182WHX2   A0A182GU46   A0A182JSX0   A0A182R9U1   A0A182P129   A0A2Y9D1J2   A0A182Y323   A0A182FGB7   Q7QIP2   A7URT8   A0A182UII1   A0A1S4GUG0   A0A2M4D0T6   A0A023F105   A0A182L3H6   A0A182I6V3   A0A182VDW0   A0A182WWL7   A0A1J1I5Q8   A0A0A1XMG5   J9JQY6   A0A1A9WJD6   A0A0K2TE49   A0A1I8PC12   A0A1I8PC15   A0A182SSE8   A0A1I8MHK3   A0A1I8MHJ9   T1JB82   A0A151XGZ5  

PDB

1KQQ     E-value=0.000388335,     Score=105

KEGG

101738029    K11765 AT-rich interactive domain-containing protein 2 | (RefSeq) AT-rich interactive domain-contain

GO

GO:0003677   GO:0006355   GO:0005634   GO:0005488   GO:0016072   GO:0006457   GO:0009408   GO:0051603   GO:0030145   GO:0006412   GO:0016876   GO:0043039  

Subcellular location

Nucleus  

Length:

588

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.15904

Exp number, first 60 AAs:

0.00726

Total prob of N-in:

0.00406

outside

1  -  588

 

 

Pi

29.013194

Theta

210.476235

Tajima's D

0.564177

CLR

0.582294

CSRT

0.533973301334933

Interpretation

Uncertain