SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08402
Annotation
PREDICTED:_AF4/FMR2_family_member_3-like_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 2.536
 

Sequence

CDS
ATGGTGGCACCGCAAAATGGTCGCGTTCACCATCGGCCGCACCCTTACAACAAGAACGACGGTTCCAATCCCACTGCACAAGCTCATCGGCCACCACCATTGAGGATACCAAACGGCTTACAACCCAACATCGACAGCAGTCAACCGCCAATAGAAAGTATTTTAAAGGAAATGAAGTCGATACCAACACCCCTCTCGGTGATAGCGGCGACGCCGAGGAAAGAAGCCGAAAACAAATTCATTTTTAACCCTCACACGAATAAGGTCCAAGAGAATCCCGTGCAGGAAATCAAAACACCCCTAACAAAACCTGGTTAA
Protein
MVAPQNGRVHHRPHPYNKNDGSNPTAQAHRPPPLRIPNGLQPNIDSSQPPIESILKEMKSIPTPLSVIAATPRKEAENKFIFNPHTNKVQENPVQEIKTPLTKPG

Summary

Similarity
Belongs to the peptidase A1 family.
Pfam
PF05110   AF-4        + More
PF00026   Asp
Interpro
IPR007797   TF_AF4/FMR2        + More
IPR001969   Aspartic_peptidase_AS       
IPR033121   PEPTIDASE_A1       
IPR001461   Aspartic_peptidase_A1       
IPR021109   Peptidase_aspartic_dom_sf       
IPR039779   RFX-like       
SUPFAM
SSF50630   SSF50630       
Gene 3D

Ontologies

Topology

Length:
105
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.30153
outside
1  -  105
 
 

Population Genetic Test Statistics

Pi
207.062247
Theta
174.260646
Tajima's D
0.600293
CLR
0.582294
CSRT
0.542822858857057
Interpretation
Uncertain
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