Gene

KWMTBOMO08399  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA009208

Annotation

ribosomal_protein_L28_[Bombyx_mori]

Location

Bomo_Chr14(-):7680001-7680835      View in EpiBrowser

Full name

60S ribosomal protein L28      

Location in the cell

Mitochondrial   Reliability : 2.31 Nuclear   Reliability : 1.728

CDS

ATGTCGTCGTCACTGAACTGGATGATCATCCGCAACAACAATGCATTCCTTGTGAAGAAGCGCAATATCAAAAAGCCGTTCAGCAAGGAGCCGAACAATGTGACTAACCTCCACTCCTTCAGGTACAACGGCTTGATTCACAAGAAAGCTGTTGGTGTCGTGGAGAACCCTGACAGGAAGGGATTCACAGTAGTGTACAAGAAAGCAAAGGCTACCAGAAAGCCCGCTAAAAACTTAATCCGCCGTCCATTCAAGGCTGGTGCCAGGAGGTCACTGTACAAAGTGAAGAGGTTGTTAAAGGCTAACCACTACCGCACAGACTTATGCAAGGCTACCCTTCGTCGTGCTTCAGCCATCCTCCGCTCCCAGAGGCCCATTAAAGCAAAAAAGGCTAAGACAGCCGCAACCAAGTCGGAATAA

Protein

MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAKTAATKSE

Similarity

Belongs to the eukaryotic ribosomal protein eL28 family.

Keywords

Ribonucleoprotein   Ribosomal protein   3D-structure   Complete proteome   Reference proteome  

Feature

chain  60S ribosomal protein L28

Uniprot

Q5UAR0   D1LYL4   A0A3G1T1S1   A0A2H1VVZ9   Q962T2   Q5MGD2   + More
A0A2A4J3P1   A0A212EZW4   E7DZ62   A0A0K8T8J8   A0A0N1IPY1   I4DJ45   A0A1E1WS04   Q6F474   G0ZEI0   I4DM69   A0A0L7L9N9   A0A2P8ZDA4   E2BGF4   A0A2J7QPV4   A0A0L7QSF2   A0A310SDL8   A0A2A3E0R8   V9IGX8   A0A088ALQ3   A0A0M9A8X6   E2APD1   A0A067RH36   A0A0J7K7G1   Q4GXC1   A0A154P0L3   D1M841   Q56FK9   J3JY37   A0A109NIB1   Q4GXC2   E0VXJ0   A0A1W4XGX4   Q4GXC0   A0A1B6LAV1   A0A0T6AYD3   A0A1B6EMQ6   A0A026WWM3   A0A3L8D9Y6   K7IM02   A0A158NL52   A0A1B6K4D4   A0A158NL50   I3VPF7   A0A232EZN8   B4KXS8   A0A195C011   A0A1D1YW98   B4MLA9   A0A139WM23   B4MFW1   A0A0M3QWW5   A0A1W4W1J7   B3NBT1   B4PGM2   B4HTN5   D1Z3A1   Q9VZS5   Q29E85   B4HAS7   B3M5U3   B4IZ43   A0A1B6D9L3   B4QP55   A0A0L0BVM6   A0A3B0JXT4   Q6XIQ4   T1PFD4   Q8MZI5   A0A1A9WBQ3   W8CC07   A0A1B0AXV4   A0A1A9VMM7   A0A1B0FD68   A0A1I8P491   A0A1B0DIX5   A0A1L8EFI8   A0A2Z4G650   A0A1B0AIB3   A0A034WQQ9   A0A0C9RP40   A0A0A1WP30   A0A1L8EBX9   A0A0K8UTW8   A0A1L8EF79   A0A2S2Q2N2   U5ETU6   A0A336MBE7   A0A2H8TFN7   C4WV90   Q4GXB9   A0A1Y1JWP5   A0A1L8DR81   A0A1L8DSC4   R4WCY3  

Pubmed

19121390    14668217    16023793    22118469    26354079    22651552    + More
26227816    29403074    20798317    24845553    22516182    23537049    20566863    24508170    30249741    20075255    21347285    23049752    28648823    17994087    18362917    19820115    18057021    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    12537569    23636399    15632085    22936249    26108605    14525923    25315136    24495485    29889877    25348373    25830018    28004739    23691247   

EMBL

BABH01022425    AY769298    AAV34840.1    GU084288    ACY95321.1    MG992465    + More
AXY94903.1    ODYU01004471    SOQ44374.1    AF400192    AY829854    AAV91468.1    NWSH01003407    PCG66356.1    AGBW02011232    OWR46997.1    HQ424765    ADT80709.1    GBRD01004100    JAG61721.1    KQ459986    KPJ18865.1    AK401313    KQ459256    BAM17935.1    KPJ02091.1    GDQN01001245    JAT89809.1    AB180416    BAD26660.1    JF265058    AEL28889.1    AK402387    BAM19009.1    JTDY01002071    KOB72177.1    PYGN01000092    PSN54471.1    GL448165    EFN85228.1    NEVH01012087    PNF30616.1    KQ414758    KOC61560.1    KQ761005    OAD58429.1    KZ288470    PBC25353.1    JR045029    AEY59927.1    KQ435724    KOX78289.1    GL441512    EFN64705.1    KK852639    KDR19636.1    LBMM01012251    KMQ86322.1    AM049102    CAJ17402.1    KQ434783    KZC04680.1    GU120465    ACY71315.1    AY961491    AAX62393.1    APGK01041368    BT128161    KB740993    KB632256    AEE63122.1    ENN76060.1    ERL90722.1    KC507352    AHB12475.1    AM049101    CAJ17401.1    DS235832    EEB18096.1    AM049103    CAJ17403.1    GEBQ01019159    JAT20818.1    LJIG01022529    KRT80097.1    GECZ01030554    JAS39215.1    KK107078    EZA60228.1    QOIP01000011    RLU17146.1    GECU01001401    JAT06306.1    ADTU01019255    JW050239    AFK82396.1    NNAY01001466    OXU23871.1    CH933809    EDW17600.1    KQ978501    KYM93511.1    GDJX01008998    JAT58938.1    CH963847    EDW73367.1    KQ971318    KYB28943.1    CH940669    EDW58289.1    CP012525    ALC44829.1    CH954178    EDV50748.1    KQS43485.1    KQS43486.1    CM000159    EDW93240.1    KRK01044.1    KRK01045.1    CH480817    EDW50306.1    AE014296    BT120073    AAF47743.2    ACZ94608.1    ACZ94609.1    ADA70410.1    AY071444    CH379070    EAL30177.1    CH479244    EDW37709.1    CH902618    EDV39633.2    CH916366    EDV95565.1    GEDC01015013    JAS22285.1    CM000363    CM002912    EDX09050.1    KMY97305.1    JRES01001371    KNC23289.1    OUUW01000002    SPP77531.1    AY231775    AAR09798.1    KA647399    AFP62028.1    AY102656    AAM27485.1    GAMC01000054    JAC06502.1    JXJN01005431    CCAG010007513    AJVK01063264    GFDG01001450    JAV17349.1    MG983774    AWV96609.1    GAKP01002864    JAC56088.1    GBYB01015307    JAG85074.1    GBXI01013680    JAD00612.1    GFDG01002559    JAV16240.1    GDHF01022170    JAI30144.1    GFDG01001451    JAV17348.1    GGMS01002229    MBY71432.1    GANO01001752    JAB58119.1    UFQT01000340    SSX23378.1    GFXV01001099    MBW12904.1    ABLF02007912    AK341410    BAH71810.1    AM049104    CAJ17404.1    GEZM01098821    JAV53732.1    GFDF01005135    JAV08949.1    GFDF01004807    JAV09277.1    AK417039    BAN20254.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000037510    + More
UP000245037    UP000008237    UP000235965    UP000053825    UP000242457    UP000005203    UP000053105    UP000000311    UP000027135    UP000036403    UP000076502    UP000019118    UP000030742    UP000009046    UP000192223    UP000053097    UP000279307    UP000002358    UP000005205    UP000215335    UP000009192    UP000078542    UP000007798    UP000007266    UP000008792    UP000092553    UP000192221    UP000008711    UP000002282    UP000001292    UP000000803    UP000001819    UP000008744    UP000007801    UP000001070    UP000000304    UP000037069    UP000268350    UP000095301    UP000091820    UP000092460    UP000078200    UP000092444    UP000095300    UP000092462    UP000092445    UP000007819   

PRIDE

Q5UAR0    A0A088ALQ3    D1Z3A1    Q9VZS5    Q8MZI5   

Pfam

PF01778   Ribosomal_L28e        + More
PF00400   WD40

Interpro

IPR002672   Ribosomal_L28e        + More
IPR029004   L28e/Mak16       
IPR036322   WD40_repeat_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR001680   WD40_repeat       
IPR039857   Ift122       
IPR017986   WD40_repeat_dom       

SUPFAM

SSF50978   SSF50978       

Gene 3D

1.25.40.10     2.130.10.10    

ProteinModelPortal

Q5UAR0   D1LYL4   A0A3G1T1S1   A0A2H1VVZ9   Q962T2   Q5MGD2   + More
A0A2A4J3P1   A0A212EZW4   E7DZ62   A0A0K8T8J8   A0A0N1IPY1   I4DJ45   A0A1E1WS04   Q6F474   G0ZEI0   I4DM69   A0A0L7L9N9   A0A2P8ZDA4   E2BGF4   A0A2J7QPV4   A0A0L7QSF2   A0A310SDL8   A0A2A3E0R8   V9IGX8   A0A088ALQ3   A0A0M9A8X6   E2APD1   A0A067RH36   A0A0J7K7G1   Q4GXC1   A0A154P0L3   D1M841   Q56FK9   J3JY37   A0A109NIB1   Q4GXC2   E0VXJ0   A0A1W4XGX4   Q4GXC0   A0A1B6LAV1   A0A0T6AYD3   A0A1B6EMQ6   A0A026WWM3   A0A3L8D9Y6   K7IM02   A0A158NL52   A0A1B6K4D4   A0A158NL50   I3VPF7   A0A232EZN8   B4KXS8   A0A195C011   A0A1D1YW98   B4MLA9   A0A139WM23   B4MFW1   A0A0M3QWW5   A0A1W4W1J7   B3NBT1   B4PGM2   B4HTN5   D1Z3A1   Q9VZS5   Q29E85   B4HAS7   B3M5U3   B4IZ43   A0A1B6D9L3   B4QP55   A0A0L0BVM6   A0A3B0JXT4   Q6XIQ4   T1PFD4   Q8MZI5   A0A1A9WBQ3   W8CC07   A0A1B0AXV4   A0A1A9VMM7   A0A1B0FD68   A0A1I8P491   A0A1B0DIX5   A0A1L8EFI8   A0A2Z4G650   A0A1B0AIB3   A0A034WQQ9   A0A0C9RP40   A0A0A1WP30   A0A1L8EBX9   A0A0K8UTW8   A0A1L8EF79   A0A2S2Q2N2   U5ETU6   A0A336MBE7   A0A2H8TFN7   C4WV90   Q4GXB9   A0A1Y1JWP5   A0A1L8DR81   A0A1L8DSC4   R4WCY3  

PDB

4V6W     E-value=9.84809e-33,     Score=343

KEGG

692704    K02903 large subunit ribosomal protein L28e | (RefSeq) RpL28; ribosomal protein L28

PATHWAY

03010    Ribosome - Bombyx mori (domestic silkworm)

GO

GO:0003735   GO:0006412   GO:0005840   GO:1905515   GO:0035721   GO:0031514   GO:0061512   GO:0030991   GO:0097730   GO:0002181   GO:0022625  

PANTHER

PTHR10544   PTHR12764  

Length:

139

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00015

Exp number, first 60 AAs:

0.00015

Total prob of N-in:

0.10545

outside

1  -  139

 

 

Pi

229.426397

Theta

145.329058

Tajima's D

1.838895

CLR

0.196915

CSRT

0.854207289635518

Interpretation

Uncertain