SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO08385
Annotation
thap_domain-containing_protein_9_[Lasius_niger]
Location in the cell
Nuclear   Reliability : 3.212
 

Sequence

CDS
ATGTATTACACACAAAAAGGGTTTCGGAGAATAAATAAAAATGCTGTACCAAAAATAGAGATTCAAACTACACAAGAAAAGGATCCGGAACAGTTGCACGAAAATAATCTCTCTGGAGAAAATTGCCTAACAGAAGTAGAAAGCTTATTGCAGTCCCAAGTCAGTACTAGTGTAACTGAAAAAAAAGCATTATCTCGAAAATCATCAAAGTTAACTGCAGATATGAGCCAGGAATCAGCTACTGTTCATCTACCACCGCAAGCTTCTGAACTTTTCGTGGCACCTCCAGGTTTTACAGAAGAAGCCTTTTCAAGACTAGCTGATAAAGCCAAAGCGTGCACAGGTCCTCTTTTGTGCTCCTTAGTGGCTGATGAAATGTCTATACGCCAGCAAAAAATTTGGACTGGAAATAAGTACGAAGGTCTTGTGGACATGGGAGTTGGTTCTAGTGACTCAGATATTCTGGCTAACCAAGCTTTTGTGTTCTTGTTGGGTAACTAG
Protein
MYYTQKGFRRINKNAVPKIEIQTTQEKDPEQLHENNLSGENCLTEVESLLQSQVSTSVTEKKALSRKSSKLTADMSQESATVHLPPQASELFVAPPGFTEEAFSRLADKAKACTGPLLCSLVADEMSIRQQKIWTGNKYEGLVDMGVGSSDSDILANQAFVFLLGN

Summary

Pfam
PF05485   THAP        + More
PF12017   Tnp_P_element
Interpro
IPR006612   THAP_Znf        + More
IPR038441   THAP_Znf_sf       
IPR021896   Transposase_37       
IPR026516   THAP1       
Gene 3D

Ontologies

Topology

Length:
166
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00503
Exp number, first 60 AAs:
0
Total prob of N-in:
0.44131
outside
1  -  166
 
 

Population Genetic Test Statistics

Pi
234.784191
Theta
222.070565
Tajima's D
1.144245
CLR
10.155906
CSRT
0.698615069246538
Interpretation
Uncertain
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